Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT2G30660 - ( 3-hydroxyisobutyryl-coenzyme A hydrolase putative / CoA-thioester hydrolase putative )
17 Proteins interacs with AT2G30660Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT5G56940 | PredictedAffinity Capture-MS | FSW = 0.3920
| Unknown | RIBOSOMAL PROTEIN S16 FAMILY PROTEIN |
AT1G74970 | Predictedinteraction prediction | FSW = 0.3750
| Unknown | RPS9 (RIBOSOMAL PROTEIN S9) STRUCTURAL CONSTITUENT OF RIBOSOME |
ATCG00160 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.0513
| Unknown | CHLOROPLAST RIBOSOMAL PROTEIN S2 |
ATCG01240 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.0769
| Unknown | 30S CHLOROPLAST RIBOSOMAL PROTEIN S7 |
AT5G65940 | PredictedGene fusion methodPhylogenetic profile methodCo-expression | FSW = 0.3176
| Unknown | CHY1 (BETA-HYDROXYISOBUTYRYL-COA HYDROLASE 1) 3-HYDROXYISOBUTYRYL-COA HYDROLASE |
AT4G31810 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.6154
| Unknown | ENOYL-COA HYDRATASE/ISOMERASE FAMILY PROTEIN |
AT3G60510 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.3516
| Unknown | ENOYL-COA HYDRATASE/ISOMERASE FAMILY PROTEIN |
AT3G03600 | Predictedinteraction prediction | FSW = 0.1823
| Unknown | RPS2 (RIBOSOMAL PROTEIN S2) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT1G64600 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.4202
| Unknown | COPPER ION BINDING / METHYLTRANSFERASE |
AT2G36930 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0355
| Unknown | ZINC FINGER (C2H2 TYPE) FAMILY PROTEIN |
AT3G49080 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.0952
| Unknown | RIBOSOMAL PROTEIN S9 FAMILY PROTEIN |
AT1G49400 | Predictedinteraction prediction | FSW = 0.1939
| Unknown | EMB1129 (EMBRYO DEFECTIVE 1129) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT1G15810 | Predictedinteraction prediction | FSW = 0.3000
| Unknown | RIBOSOMAL PROTEIN S15 FAMILY PROTEIN |
AT1G06550 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.2735
| Unknown | ENOYL-COA HYDRATASE/ISOMERASE FAMILY PROTEIN |
AT2G30650 | PredictedGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.5326
| Unknown | CATALYTIC |
AT3G24360 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.5470
| Unknown | ENOYL-COA HYDRATASE/ISOMERASE FAMILY PROTEIN |
AT4G13360 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.6154
| Unknown | CATALYTIC |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454