Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G65940 - ( CHY1 (BETA-HYDROXYISOBUTYRYL-COA HYDROLASE 1) 3-hydroxyisobutyryl-CoA hydrolase )
22 Proteins interacs with AT5G65940Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G47520 | PredictedPhenotypic Enhancement | FSW = 0.1039
| Unknown | MDH (MALATE DEHYDROGENASE) L-MALATE DEHYDROGENASE/ BINDING / CATALYTIC/ MALATE DEHYDROGENASE/ OXIDOREDUCTASE/ OXIDOREDUCTASE ACTING ON THE CH-OH GROUP OF DONORS NAD OR NADP AS ACCEPTOR |
AT1G16030 | PredictedPhenotypic Enhancement | FSW = 0.0573
| Unknown | HSP70B (HEAT SHOCK PROTEIN 70B) ATP BINDING |
AT3G19960 | PredictedAffinity Capture-MS | FSW = 0.0376
| Unknown | ATM1 (ARABIDOPSIS THALIANA MYOSIN 1) MOTOR |
AT3G20920 | PredictedPhenotypic Enhancement | FSW = 0.1129
| Unknown | TRANSLOCATION PROTEIN-RELATED |
AT3G60510 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.2949
| Unknown | ENOYL-COA HYDRATASE/ISOMERASE FAMILY PROTEIN |
AT4G31810 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.3476
| Unknown | ENOYL-COA HYDRATASE/ISOMERASE FAMILY PROTEIN |
AT1G34340 | PredictedPhenotypic Enhancement | FSW = 0.1350
| Unknown | ESTERASE/LIPASE/THIOESTERASE FAMILY PROTEIN |
AT1G34580 | PredictedAffinity Capture-MS | FSW = 0.0026
| Unknown | MONOSACCHARIDE TRANSPORTER PUTATIVE |
AT2G29190 | PredictedPhenotypic Enhancement | FSW = 0.1290
| Unknown | APUM2 (ARABIDOPSIS PUMILIO 2) RNA BINDING / BINDING |
AT4G33950 | PredictedPhenotypic Enhancement | FSW = 0.0990
| Unknown | OST1 (OPEN STOMATA 1) CALCIUM-DEPENDENT PROTEIN SERINE/THREONINE KINASE/ KINASE/ PROTEIN KINASE |
AT5G57190 | PredictedPhenotypic Enhancement | FSW = 0.2686
| Unknown | PSD2 (PHOSPHATIDYLSERINE DECARBOXYLASE 2) PHOSPHATIDYLSERINE DECARBOXYLASE |
AT1G18830 | PredictedPhenotypic Enhancement | FSW = 0.1829
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT2G27340 | PredictedPhenotypic Enhancement | FSW = 0.1376
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN CONTAINS INTERPRO DOMAIN/S N-ACETYLGLUCOSAMINYL PHOSPHATIDYLINOSITOL DEACETYLASE (INTERPROIPR003737) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS N-ACETYLGLUCOSAMINYL-PHOSPHATIDYLINOSITOL DE-N-ACETYLASE-RELATED (TAIRAT3G581302) HAS 325 BLAST HITS TO 323 PROTEINS IN 156 SPECIES ARCHAE - 0 BACTERIA - 42 METAZOA - 92 FUNGI - 108 PLANTS - 28 VIRUSES - 0 OTHER EUKARYOTES - 55 (SOURCE NCBI BLINK) |
AT5G19300 | PredictedPhenotypic Enhancement | FSW = 0.2596
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 20 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S NUCLEIC ACID-BINDING OB-FOLD-LIKE (INTERPROIPR016027) PROTEIN OF UNKNOWN FUNCTION DUF171 (INTERPROIPR003750) HAS 4766 BLAST HITS TO 2044 PROTEINS IN 217 SPECIES ARCHAE - 72 BACTERIA - 102 METAZOA - 2264 FUNGI - 372 PLANTS - 195 VIRUSES - 4 OTHER EUKARYOTES - 1757 (SOURCE NCBI BLINK) |
AT5G52210 | PredictedPhenotypic Enhancement | FSW = 0.0634
| Unknown | ATGB1 (ARABIDOPSIS THALIANA GTP-BINDING PROTEIN 1) GTP BINDING |
AT5G53120 | PredictedPhenotypic Enhancement | FSW = 0.2245
| Unknown | SPDS3 (SPERMIDINE SYNTHASE 3) SPERMIDINE SYNTHASE/ SPERMINE SYNTHASE |
AT2G30650 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.2470
| Unknown | CATALYTIC |
AT3G24360 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.3683
| Unknown | ENOYL-COA HYDRATASE/ISOMERASE FAMILY PROTEIN |
AT4G13360 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.3476
| Unknown | CATALYTIC |
AT1G06550 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.2294
| Unknown | ENOYL-COA HYDRATASE/ISOMERASE FAMILY PROTEIN |
AT2G30660 | PredictedGene fusion methodPhylogenetic profile methodCo-expression | FSW = 0.3176
| Unknown | 3-HYDROXYISOBUTYRYL-COENZYME A HYDROLASE PUTATIVE / COA-THIOESTER HYDROLASE PUTATIVE |
AT5G19680 | PredictedGene fusion method | FSW = 0.0200
| Unknown | LEUCINE-RICH REPEAT FAMILY PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454