Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT2G27340 - ( FUNCTIONS IN molecular_function unknown INVOLVED IN biological_process unknown CONTAINS InterPro DOMAIN/s N-acetylglucosaminyl phosphatidylinositol deacetylase (InterProIPR003737) BEST Arabidopsis thaliana protein match is N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase-related (TAIRAT3G581302) Has 325 Blast hits to 323 proteins in 156 species Archae - 0 Bacteria - 42 Metazoa - 92 Fungi - 108 Plants - 28 Viruses - 0 Other Eukaryotes - 55 (source NCBI BLink) )

51 Proteins interacs with AT2G27340
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT3G47520

Predicted

Phenotypic Enhancement

FSW = 0.1286

Unknown

MDH (MALATE DEHYDROGENASE) L-MALATE DEHYDROGENASE/ BINDING / CATALYTIC/ MALATE DEHYDROGENASE/ OXIDOREDUCTASE/ OXIDOREDUCTASE ACTING ON THE CH-OH GROUP OF DONORS NAD OR NADP AS ACCEPTOR
AT1G16240

Predicted

Phenotypic Enhancement

FSW = 0.0308

Unknown

SYP51 (SYNTAXIN OF PLANTS 51) SNAP RECEPTOR
AT3G62870

Predicted

synthetic growth defect

FSW = 0.0571

Unknown

60S RIBOSOMAL PROTEIN L7A (RPL7AB)
AT3G11940

Predicted

Synthetic Lethality

FSW = 0.0835

Unknown

ATRPS5A (RIBOSOMAL PROTEIN 5A) STRUCTURAL CONSTITUENT OF RIBOSOME
AT5G09660

Predicted

Phenotypic Enhancement

FSW = 0.0525

Unknown

PMDH2 (PEROXISOMAL NAD-MALATE DEHYDROGENASE 2) MALATE DEHYDROGENASE
AT1G55920

Predicted

Phenotypic Enhancement

FSW = 0.1199

Unknown

ATSERAT21 (SERINE ACETYLTRANSFERASE 21) SERINE O-ACETYLTRANSFERASE
AT5G54770

Predicted

Phenotypic Enhancement

FSW = 0.0365

Unknown

THI1 PROTEIN HOMODIMERIZATION
AT3G61430

Predicted

Affinity Capture-Western

FSW = 0.0195

Unknown

PIP1A (PLASMA MEMBRANE INTRINSIC PROTEIN 1A) WATER CHANNEL
AT2G21540

Predicted

Affinity Capture-MS

FSW = 0.0947

Unknown

SFH3 (SEC14-LIKE 3) PHOSPHATIDYLINOSITOL TRANSPORTER
AT4G36640

Predicted

Phenotypic Enhancement

FSW = 0.1169

Unknown

SEC14 CYTOSOLIC FACTOR FAMILY PROTEIN / PHOSPHOGLYCERIDE TRANSFER FAMILY PROTEIN
AT1G50310

Predicted

Affinity Capture-MS

FSW = 0.0386

Unknown

STP9 (SUGAR TRANSPORTER 9) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER
AT3G56760

Predicted

Phenotypic Suppression

FSW = 0.0336

Unknown

CALCIUM-DEPENDENT PROTEIN KINASE PUTATIVE / CDPK PUTATIVE
AT5G26340

Predicted

Phenotypic Enhancement

Phenotypic Enhancement

synthetic growth defect

FSW = 0.1205

Unknown

MSS1 CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ HEXOSEHYDROGEN SYMPORTER/ HIGH-AFFINITY HYDROGENGLUCOSE SYMPORTER/ SUGARHYDROGEN SYMPORTER
AT1G69850

Predicted

Phenotypic Enhancement

FSW = 0.1398

Unknown

ATNRT12 (ARABIDOPSIS THALIANA NITRATE TRANSPORTER 12) CALCIUM ION BINDING / TRANSPORTER
AT2G39480

Predicted

Phenotypic Enhancement

FSW = 0.1767

Unknown

PGP6 (P-GLYCOPROTEIN 6) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES
AT4G14350

Predicted

Phenotypic Suppression

FSW = 0.0247

Unknown

PROTEIN KINASE FAMILY PROTEIN
AT5G65940

Predicted

Phenotypic Enhancement

FSW = 0.1376

Unknown

CHY1 (BETA-HYDROXYISOBUTYRYL-COA HYDROLASE 1) 3-HYDROXYISOBUTYRYL-COA HYDROLASE
AT1G76300

Predicted

Phenotypic Enhancement

FSW = 0.0776

Unknown

SMD3 (SNRNP CORE PROTEIN SMD3)
AT3G10920

Predicted

Affinity Capture-MS

FSW = 0.0686

Unknown

MSD1 (MANGANESE SUPEROXIDE DISMUTASE 1) METAL ION BINDING / SUPEROXIDE DISMUTASE
AT1G29330

Predicted

Phenotypic Enhancement

FSW = 0.1047

Unknown

ERD2 (ENDOPLASMIC RETICULUM RETENTION DEFECTIVE 2) KDEL SEQUENCE BINDING / RECEPTOR
AT4G33730

Predicted

Phenotypic Enhancement

FSW = 0.2077

Unknown

PATHOGENESIS-RELATED PROTEIN PUTATIVE
AT3G16050

Predicted

Affinity Capture-MS

FSW = 0.0689

Unknown

A37 PROTEIN HETERODIMERIZATION
AT5G28060

Predicted

Phenotypic Enhancement

FSW = 0.2239

Unknown

40S RIBOSOMAL PROTEIN S24 (RPS24B)
AT4G15900

Predicted

Phenotypic Enhancement

FSW = 0.0860

Unknown

PRL1 (PLEIOTROPIC REGULATORY LOCUS 1) BASAL TRANSCRIPTION REPRESSOR/ NUCLEOTIDE BINDING / PROTEIN BINDING
AT1G18830Predicted

Phenotypic Enhancement

FSW = 0.1929

Unknown

TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT1G61670

Predicted

Phenotypic Enhancement

FSW = 0.1975

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN LOCATED IN ENDOMEMBRANE SYSTEM INTEGRAL TO MEMBRANE CONTAINS INTERPRO DOMAIN/S TRANSMEMBRANE RECEPTOR EUKARYOTA (INTERPROIPR009637) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G109801) HAS 473 BLAST HITS TO 471 PROTEINS IN 125 SPECIES ARCHAE - 0 BACTERIA - 2 METAZOA - 242 FUNGI - 99 PLANTS - 92 VIRUSES - 0 OTHER EUKARYOTES - 38 (SOURCE NCBI BLINK)
AT2G01830

Predicted

Synthetic Lethality

Phenotypic Enhancement

FSW = 0.1277

Unknown

WOL (WOODEN LEG) CYTOKININ RECEPTOR/ OSMOSENSOR/ PHOSPHOPROTEIN PHOSPHATASE/ PROTEIN HISTIDINE KINASE
AT2G16740

Predicted

Synthetic Lethality

FSW = 0.0356

Unknown

UBC29 (UBIQUITIN-CONJUGATING ENZYME 29) UBIQUITIN-PROTEIN LIGASE
AT3G05960

Predicted

Phenotypic Enhancement

Synthetic Lethality

FSW = 0.1124

Unknown

STP6 (SUGAR TRANSPORTER 6) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ MONOSACCHARIDE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER
AT3G09800

Predicted

Phenotypic Enhancement

FSW = 0.1731

Unknown

PROTEIN BINDING
AT5G01430

Predicted

Phenotypic Enhancement

FSW = 0.0289

Unknown

GOT1-LIKE FAMILY PROTEIN
AT5G19300

Predicted

Phenotypic Enhancement

FSW = 0.2985

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 20 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S NUCLEIC ACID-BINDING OB-FOLD-LIKE (INTERPROIPR016027) PROTEIN OF UNKNOWN FUNCTION DUF171 (INTERPROIPR003750) HAS 4766 BLAST HITS TO 2044 PROTEINS IN 217 SPECIES ARCHAE - 72 BACTERIA - 102 METAZOA - 2264 FUNGI - 372 PLANTS - 195 VIRUSES - 4 OTHER EUKARYOTES - 1757 (SOURCE NCBI BLINK)
AT5G52200

Predicted

Phenotypic Enhancement

FSW = 0.2121

Unknown

UNKNOWN PROTEIN
AT5G53120

Predicted

Phenotypic Enhancement

FSW = 0.1607

Unknown

SPDS3 (SPERMIDINE SYNTHASE 3) SPERMIDINE SYNTHASE/ SPERMINE SYNTHASE
AT5G57190

Predicted

Phenotypic Enhancement

Synthetic Lethality

FSW = 0.3086

Unknown

PSD2 (PHOSPHATIDYLSERINE DECARBOXYLASE 2) PHOSPHATIDYLSERINE DECARBOXYLASE
AT2G29190

Predicted

Phenotypic Enhancement

FSW = 0.3354

Unknown

APUM2 (ARABIDOPSIS PUMILIO 2) RNA BINDING / BINDING
AT2G32765

Predicted

Phenotypic Suppression

FSW = 0.0898

Unknown

SUMO5 (SMALL UBIQUITINRELATED MODIFIER 5) PROTEIN TAG
AT3G18850

Predicted

Affinity Capture-MS

FSW = 0.0677

Unknown

LPAT5 ACYLTRANSFERASE
AT3G25585

Predicted

Affinity Capture-MS

FSW = 0.1376

Unknown

AAPT2 (AMINOALCOHOLPHOSPHOTRANSFERASE) PHOSPHATIDYLTRANSFERASE/ PHOSPHOTRANSFERASE FOR OTHER SUBSTITUTED PHOSPHATE GROUPS
AT3G53650

Predicted

Phenotypic Enhancement

FSW = 0.0889

Unknown

HISTONE H2B PUTATIVE
AT3G59410

Predicted

Affinity Capture-MS

FSW = 0.0436

Unknown

PROTEIN KINASE FAMILY PROTEIN
AT4G04950

Predicted

Affinity Capture-MS

FSW = 0.0071

Unknown

THIOREDOXIN FAMILY PROTEIN
AT4G35620

Predicted

Affinity Capture-MS

FSW = 0.0645

Unknown

CYCB22 (CYCLIN B22) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR
AT4G36070

Predicted

Phenotypic Enhancement

FSW = 0.0604

Unknown

CPK18 ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
AT5G01770

Predicted

Phenotypic Enhancement

FSW = 0.0100

Unknown

RAPTOR2 (RAPTOR2) BINDING / NUCLEOTIDE BINDING
AT5G13860

Predicted

Affinity Capture-MS

FSW = 0.0214

Unknown

ELC-LIKE (ELCH-LIKE) SMALL CONJUGATING PROTEIN LIGASE
AT5G14180

Predicted

Phenotypic Enhancement

FSW = 0.0189

Unknown

MPL1 (MYZUS PERSICAE-INDUCED LIPASE 1) CATALYTIC
AT5G19150

Predicted

Affinity Capture-MS

FSW = 0.0945

Unknown

CARBOHYDRATE KINASE FAMILY
AT5G27640

Predicted

Affinity Capture-MS

FSW = 0.0805

Unknown

TIF3B1 (TRANSLATION INITIATION FACTOR 3B1) NUCLEIC ACID BINDING / TRANSLATION INITIATION FACTOR
AT5G28470

Predicted

Affinity Capture-MS

FSW = 0.0242

Unknown

TRANSPORTER
AT3G58130

Predicted

Phylogenetic profile method

FSW = 0.0741

Unknown

N-ACETYLGLUCOSAMINYL-PHOSPHATIDYLINOSITOL DE-N-ACETYLASE-RELATED

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454