Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT2G27340 - ( FUNCTIONS IN molecular_function unknown INVOLVED IN biological_process unknown CONTAINS InterPro DOMAIN/s N-acetylglucosaminyl phosphatidylinositol deacetylase (InterProIPR003737) BEST Arabidopsis thaliana protein match is N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase-related (TAIRAT3G581302) Has 325 Blast hits to 323 proteins in 156 species Archae - 0 Bacteria - 42 Metazoa - 92 Fungi - 108 Plants - 28 Viruses - 0 Other Eukaryotes - 55 (source NCBI BLink) )
51 Proteins interacs with AT2G27340Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G47520 | PredictedPhenotypic Enhancement | FSW = 0.1286
| Unknown | MDH (MALATE DEHYDROGENASE) L-MALATE DEHYDROGENASE/ BINDING / CATALYTIC/ MALATE DEHYDROGENASE/ OXIDOREDUCTASE/ OXIDOREDUCTASE ACTING ON THE CH-OH GROUP OF DONORS NAD OR NADP AS ACCEPTOR |
AT1G16240 | PredictedPhenotypic Enhancement | FSW = 0.0308
| Unknown | SYP51 (SYNTAXIN OF PLANTS 51) SNAP RECEPTOR |
AT3G62870 | Predictedsynthetic growth defect | FSW = 0.0571
| Unknown | 60S RIBOSOMAL PROTEIN L7A (RPL7AB) |
AT3G11940 | PredictedSynthetic Lethality | FSW = 0.0835
| Unknown | ATRPS5A (RIBOSOMAL PROTEIN 5A) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT5G09660 | PredictedPhenotypic Enhancement | FSW = 0.0525
| Unknown | PMDH2 (PEROXISOMAL NAD-MALATE DEHYDROGENASE 2) MALATE DEHYDROGENASE |
AT1G55920 | PredictedPhenotypic Enhancement | FSW = 0.1199
| Unknown | ATSERAT21 (SERINE ACETYLTRANSFERASE 21) SERINE O-ACETYLTRANSFERASE |
AT5G54770 | PredictedPhenotypic Enhancement | FSW = 0.0365
| Unknown | THI1 PROTEIN HOMODIMERIZATION |
AT3G61430 | PredictedAffinity Capture-Western | FSW = 0.0195
| Unknown | PIP1A (PLASMA MEMBRANE INTRINSIC PROTEIN 1A) WATER CHANNEL |
AT2G21540 | PredictedAffinity Capture-MS | FSW = 0.0947
| Unknown | SFH3 (SEC14-LIKE 3) PHOSPHATIDYLINOSITOL TRANSPORTER |
AT4G36640 | PredictedPhenotypic Enhancement | FSW = 0.1169
| Unknown | SEC14 CYTOSOLIC FACTOR FAMILY PROTEIN / PHOSPHOGLYCERIDE TRANSFER FAMILY PROTEIN |
AT1G50310 | PredictedAffinity Capture-MS | FSW = 0.0386
| Unknown | STP9 (SUGAR TRANSPORTER 9) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER |
AT3G56760 | PredictedPhenotypic Suppression | FSW = 0.0336
| Unknown | CALCIUM-DEPENDENT PROTEIN KINASE PUTATIVE / CDPK PUTATIVE |
AT5G26340 | PredictedPhenotypic EnhancementPhenotypic Enhancementsynthetic growth defect | FSW = 0.1205
| Unknown | MSS1 CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ HEXOSEHYDROGEN SYMPORTER/ HIGH-AFFINITY HYDROGENGLUCOSE SYMPORTER/ SUGARHYDROGEN SYMPORTER |
AT1G69850 | PredictedPhenotypic Enhancement | FSW = 0.1398
| Unknown | ATNRT12 (ARABIDOPSIS THALIANA NITRATE TRANSPORTER 12) CALCIUM ION BINDING / TRANSPORTER |
AT2G39480 | PredictedPhenotypic Enhancement | FSW = 0.1767
| Unknown | PGP6 (P-GLYCOPROTEIN 6) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES |
AT4G14350 | PredictedPhenotypic Suppression | FSW = 0.0247
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
AT5G65940 | PredictedPhenotypic Enhancement | FSW = 0.1376
| Unknown | CHY1 (BETA-HYDROXYISOBUTYRYL-COA HYDROLASE 1) 3-HYDROXYISOBUTYRYL-COA HYDROLASE |
AT1G76300 | PredictedPhenotypic Enhancement | FSW = 0.0776
| Unknown | SMD3 (SNRNP CORE PROTEIN SMD3) |
AT3G10920 | PredictedAffinity Capture-MS | FSW = 0.0686
| Unknown | MSD1 (MANGANESE SUPEROXIDE DISMUTASE 1) METAL ION BINDING / SUPEROXIDE DISMUTASE |
AT1G29330 | PredictedPhenotypic Enhancement | FSW = 0.1047
| Unknown | ERD2 (ENDOPLASMIC RETICULUM RETENTION DEFECTIVE 2) KDEL SEQUENCE BINDING / RECEPTOR |
AT4G33730 | PredictedPhenotypic Enhancement | FSW = 0.2077
| Unknown | PATHOGENESIS-RELATED PROTEIN PUTATIVE |
AT3G16050 | PredictedAffinity Capture-MS | FSW = 0.0689
| Unknown | A37 PROTEIN HETERODIMERIZATION |
AT5G28060 | PredictedPhenotypic Enhancement | FSW = 0.2239
| Unknown | 40S RIBOSOMAL PROTEIN S24 (RPS24B) |
AT4G15900 | PredictedPhenotypic Enhancement | FSW = 0.0860
| Unknown | PRL1 (PLEIOTROPIC REGULATORY LOCUS 1) BASAL TRANSCRIPTION REPRESSOR/ NUCLEOTIDE BINDING / PROTEIN BINDING |
AT1G18830 | PredictedPhenotypic Enhancement | FSW = 0.1929
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT1G61670 | PredictedPhenotypic Enhancement | FSW = 0.1975
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN LOCATED IN ENDOMEMBRANE SYSTEM INTEGRAL TO MEMBRANE CONTAINS INTERPRO DOMAIN/S TRANSMEMBRANE RECEPTOR EUKARYOTA (INTERPROIPR009637) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G109801) HAS 473 BLAST HITS TO 471 PROTEINS IN 125 SPECIES ARCHAE - 0 BACTERIA - 2 METAZOA - 242 FUNGI - 99 PLANTS - 92 VIRUSES - 0 OTHER EUKARYOTES - 38 (SOURCE NCBI BLINK) |
AT2G01830 | PredictedSynthetic LethalityPhenotypic Enhancement | FSW = 0.1277
| Unknown | WOL (WOODEN LEG) CYTOKININ RECEPTOR/ OSMOSENSOR/ PHOSPHOPROTEIN PHOSPHATASE/ PROTEIN HISTIDINE KINASE |
AT2G16740 | PredictedSynthetic Lethality | FSW = 0.0356
| Unknown | UBC29 (UBIQUITIN-CONJUGATING ENZYME 29) UBIQUITIN-PROTEIN LIGASE |
AT3G05960 | PredictedPhenotypic EnhancementSynthetic Lethality | FSW = 0.1124
| Unknown | STP6 (SUGAR TRANSPORTER 6) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ MONOSACCHARIDE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER |
AT3G09800 | PredictedPhenotypic Enhancement | FSW = 0.1731
| Unknown | PROTEIN BINDING |
AT5G01430 | PredictedPhenotypic Enhancement | FSW = 0.0289
| Unknown | GOT1-LIKE FAMILY PROTEIN |
AT5G19300 | PredictedPhenotypic Enhancement | FSW = 0.2985
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 20 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S NUCLEIC ACID-BINDING OB-FOLD-LIKE (INTERPROIPR016027) PROTEIN OF UNKNOWN FUNCTION DUF171 (INTERPROIPR003750) HAS 4766 BLAST HITS TO 2044 PROTEINS IN 217 SPECIES ARCHAE - 72 BACTERIA - 102 METAZOA - 2264 FUNGI - 372 PLANTS - 195 VIRUSES - 4 OTHER EUKARYOTES - 1757 (SOURCE NCBI BLINK) |
AT5G52200 | PredictedPhenotypic Enhancement | FSW = 0.2121
| Unknown | UNKNOWN PROTEIN |
AT5G53120 | PredictedPhenotypic Enhancement | FSW = 0.1607
| Unknown | SPDS3 (SPERMIDINE SYNTHASE 3) SPERMIDINE SYNTHASE/ SPERMINE SYNTHASE |
AT5G57190 | PredictedPhenotypic EnhancementSynthetic Lethality | FSW = 0.3086
| Unknown | PSD2 (PHOSPHATIDYLSERINE DECARBOXYLASE 2) PHOSPHATIDYLSERINE DECARBOXYLASE |
AT2G29190 | PredictedPhenotypic Enhancement | FSW = 0.3354
| Unknown | APUM2 (ARABIDOPSIS PUMILIO 2) RNA BINDING / BINDING |
AT2G32765 | PredictedPhenotypic Suppression | FSW = 0.0898
| Unknown | SUMO5 (SMALL UBIQUITINRELATED MODIFIER 5) PROTEIN TAG |
AT3G18850 | PredictedAffinity Capture-MS | FSW = 0.0677
| Unknown | LPAT5 ACYLTRANSFERASE |
AT3G25585 | PredictedAffinity Capture-MS | FSW = 0.1376
| Unknown | AAPT2 (AMINOALCOHOLPHOSPHOTRANSFERASE) PHOSPHATIDYLTRANSFERASE/ PHOSPHOTRANSFERASE FOR OTHER SUBSTITUTED PHOSPHATE GROUPS |
AT3G53650 | PredictedPhenotypic Enhancement | FSW = 0.0889
| Unknown | HISTONE H2B PUTATIVE |
AT3G59410 | PredictedAffinity Capture-MS | FSW = 0.0436
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
AT4G04950 | PredictedAffinity Capture-MS | FSW = 0.0071
| Unknown | THIOREDOXIN FAMILY PROTEIN |
AT4G35620 | PredictedAffinity Capture-MS | FSW = 0.0645
| Unknown | CYCB22 (CYCLIN B22) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
AT4G36070 | PredictedPhenotypic Enhancement | FSW = 0.0604
| Unknown | CPK18 ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT5G01770 | PredictedPhenotypic Enhancement | FSW = 0.0100
| Unknown | RAPTOR2 (RAPTOR2) BINDING / NUCLEOTIDE BINDING |
AT5G13860 | PredictedAffinity Capture-MS | FSW = 0.0214
| Unknown | ELC-LIKE (ELCH-LIKE) SMALL CONJUGATING PROTEIN LIGASE |
AT5G14180 | PredictedPhenotypic Enhancement | FSW = 0.0189
| Unknown | MPL1 (MYZUS PERSICAE-INDUCED LIPASE 1) CATALYTIC |
AT5G19150 | PredictedAffinity Capture-MS | FSW = 0.0945
| Unknown | CARBOHYDRATE KINASE FAMILY |
AT5G27640 | PredictedAffinity Capture-MS | FSW = 0.0805
| Unknown | TIF3B1 (TRANSLATION INITIATION FACTOR 3B1) NUCLEIC ACID BINDING / TRANSLATION INITIATION FACTOR |
AT5G28470 | PredictedAffinity Capture-MS | FSW = 0.0242
| Unknown | TRANSPORTER |
AT3G58130 | PredictedPhylogenetic profile method | FSW = 0.0741
| Unknown | N-ACETYLGLUCOSAMINYL-PHOSPHATIDYLINOSITOL DE-N-ACETYLASE-RELATED |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454