Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT2G21540 - ( SFH3 (SEC14-LIKE 3) phosphatidylinositol transporter )
82 Proteins interacs with AT2G21540| Locus | Method | FSW  | Cellular Compartment Classification (C3) | Description |
|---|---|---|---|---|
AT4G39180
   | PredictedEnriched domain pairPhylogenetic profile methodCo-expression | FSW = 0.0125
| Class C:plasma membranecytosol | SEC14 PHOSPHATIDYLINOSITOL TRANSPORTER |
| AT3G01280
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1707
| Class C:plasma membrane | VDAC1 (VOLTAGE DEPENDENT ANION CHANNEL 1) VOLTAGE-GATED ANION CHANNEL |
| AT2G01250
| PredictedSynthetic LethalityAffinity Capture-MS | FSW = 0.2934
| Class C:plasma membrane | 60S RIBOSOMAL PROTEIN L7 (RPL7B) |
| AT1G27970
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3701
| Class C:plasma membrane | NTF2B (NUCLEAR TRANSPORT FACTOR 2B) RAN GTPASE BINDING / PROTEIN TRANSPORTER |
| AT3G05560
| PredictedAffinity Capture-MS | FSW = 0.0043
| Class C:plasma membrane | 60S RIBOSOMAL PROTEIN L22-2 (RPL22B) |
| AT1G75840
| PredictedAffinity Capture-MS | FSW = 0.3576
| Class C:plasma membrane | ARAC5 (RAC-LIKE GTP BINDING PROTEIN 5) GTP BINDING / GTPASE |
| AT4G36860
| PredictedAffinity Capture-MS | FSW = 0.1993
| Class C:plasma membrane | ZINC ION BINDING |
| AT5G62300
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3080
| Class C:plasma membrane | 40S RIBOSOMAL PROTEIN S20 (RPS20C) |
| AT1G04750
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.0545
| Class C:plasma membrane | VAMP721 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 721) |
| AT2G20580
| PredictedAffinity Capture-MS | FSW = 0.0361
| Class C:plasma membrane | RPN1A (26S PROTEASOME REGULATORY SUBUNIT S2 1A) BINDING / ENZYME REGULATOR |
| AT1G70490 | PredictedAffinity Capture-MS | FSW = 0.2099
| Class C:plasma membrane | ARFA1D GTP BINDING / PHOSPHOLIPASE ACTIVATOR/ PROTEIN BINDING |
| AT4G22120
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.4957
| Class C:plasma membrane | EARLY-RESPONSIVE TO DEHYDRATION PROTEIN-RELATED / ERD PROTEIN-RELATED |
| AT4G33710
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3416
| Class C:extracellular | PATHOGENESIS-RELATED PROTEIN PUTATIVE |
| AT5G57625
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.4840
| Class C:extracellular | ALLERGEN V5/TPX-1-RELATED FAMILY PROTEIN |
| AT4G33720
| PredictedAffinity Capture-MS | FSW = 0.0305
| Class C:extracellular | PATHOGENESIS-RELATED PROTEIN PUTATIVE |
| AT3G08730
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2761
| Class C:cytosol | PK1 (PROTEIN-SERINE KINASE 1) KINASE/ PROTEIN BINDING / PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
| AT5G47720
| PredictedAffinity Capture-MS | FSW = 0.0787
| Class C:cytosol | ACETYL-COA C-ACYLTRANSFERASE PUTATIVE / 3-KETOACYL-COA THIOLASE PUTATIVE |
| AT3G16050
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.4977
| Class C:cytosol | A37 PROTEIN HETERODIMERIZATION |
| AT5G24780
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.4509
| Unknown | VSP1 (VEGETATIVE STORAGE PROTEIN 1) ACID PHOSPHATASE/ TRANSCRIPTION FACTOR BINDING |
| AT2G29990
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.5454
| Unknown | NDA2 (ALTERNATIVE NAD(P)H DEHYDROGENASE 2) FAD BINDING / NADH DEHYDROGENASE/ OXIDOREDUCTASE |
| AT3G19980
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1378
| Unknown | ATFYPP3 (FLOWER-SPECIFIC PHYTOCHROME-ASSOCIATED PROTEIN PHOSPHATASE 3) PROTEIN BINDING / PROTEIN SERINE/THREONINE KINASE/ PROTEIN SERINE/THREONINE PHOSPHATASE |
| AT5G09660
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.0636
| Unknown | PMDH2 (PEROXISOMAL NAD-MALATE DEHYDROGENASE 2) MALATE DEHYDROGENASE |
| AT4G26970
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.5429
| Unknown | ACONITATE HYDRATASE/ COPPER ION BINDING |
| AT5G03650
| PredictedAffinity Capture-MS | FSW = 0.0300
| Unknown | SBE22 (STARCH BRANCHING ENZYME 22) 14-ALPHA-GLUCAN BRANCHING ENZYME |
| AT4G23430
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.4801
| Unknown | SHORT-CHAIN DEHYDROGENASE/REDUCTASE (SDR) FAMILY PROTEIN |
| AT2G18450
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1005
| Unknown | SDH1-2 SUCCINATE DEHYDROGENASE |
| AT3G10920
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.4334
| Unknown | MSD1 (MANGANESE SUPEROXIDE DISMUTASE 1) METAL ION BINDING / SUPEROXIDE DISMUTASE |
| AT1G72480
| PredictedAffinity Capture-MS | FSW = 0.2385
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN GOLGI APPARATUS EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S TRANSMEMBRANE RECEPTOR EUKARYOTA (INTERPROIPR009637) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT2G010701) HAS 422 BLAST HITS TO 420 PROTEINS IN 121 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 208 FUNGI - 101 PLANTS - 83 VIRUSES - 0 OTHER EUKARYOTES - 30 (SOURCE NCBI BLINK) |
| AT2G27550
| PredictedAffinity Capture-MS | FSW = 0.1732
| Unknown | ATC (ARABIDOPSIS THALIANA CENTRORADIALIS) PHOSPHATIDYLETHANOLAMINE BINDING |
| AT4G17190
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0762
| Unknown | FPS2 (FARNESYL DIPHOSPHATE SYNTHASE 2) DIMETHYLALLYLTRANSTRANSFERASE/ GERANYLTRANSTRANSFERASE |
| AT1G09270
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.0448
| Unknown | IMPA-4 (IMPORTIN ALPHA ISOFORM 4) BINDING / PROTEIN TRANSPORTER |
| AT1G24706
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3738
| Unknown | UNKNOWN PROTEIN |
| AT1G33090
| PredictedAffinity Capture-MS | FSW = 0.0804
| Unknown | MATE EFFLUX FAMILY PROTEIN |
| AT2G01770
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.5533
| Unknown | VIT1 (VACUOLAR IRON TRANSPORTER 1) IRON ION TRANSMEMBRANE TRANSPORTER |
| AT2G03667
| PredictedAffinity Capture-MS | FSW = 0.1646
| Unknown | ASPARAGINE SYNTHASE (GLUTAMINE-HYDROLYZING) |
| AT2G16740
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2194
| Unknown | UBC29 (UBIQUITIN-CONJUGATING ENZYME 29) UBIQUITIN-PROTEIN LIGASE |
| AT2G19910
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.5404
| Unknown | RNA-DEPENDENT RNA POLYMERASE FAMILY PROTEIN |
| AT2G20290
| PredictedAffinity Capture-MS | FSW = 0.0245
| Unknown | XIG MOTOR/ PROTEIN BINDING |
| AT1G34580
| PredictedAffinity Capture-MS | FSW = 0.1427
| Unknown | MONOSACCHARIDE TRANSPORTER PUTATIVE |
| AT1G44180
| PredictedAffinity Capture-MS | FSW = 0.0736
| Unknown | AMINOACYLASE PUTATIVE / N-ACYL-L-AMINO-ACID AMIDOHYDROLASE PUTATIVE |
| AT1G51770
| PredictedAffinity Capture-MS | FSW = 0.1709
| Unknown | UNKNOWN PROTEIN |
| AT1G58520
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.5498
| Unknown | HYDROLASE ACTING ON ESTER BONDS / LIPASE |
| AT1G78290
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.4749
| Unknown | SERINE/THREONINE PROTEIN KINASE PUTATIVE |
| AT2G27340
| PredictedAffinity Capture-MS | FSW = 0.0947
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN CONTAINS INTERPRO DOMAIN/S N-ACETYLGLUCOSAMINYL PHOSPHATIDYLINOSITOL DEACETYLASE (INTERPROIPR003737) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS N-ACETYLGLUCOSAMINYL-PHOSPHATIDYLINOSITOL DE-N-ACETYLASE-RELATED (TAIRAT3G581302) HAS 325 BLAST HITS TO 323 PROTEINS IN 156 SPECIES ARCHAE - 0 BACTERIA - 42 METAZOA - 92 FUNGI - 108 PLANTS - 28 VIRUSES - 0 OTHER EUKARYOTES - 55 (SOURCE NCBI BLINK) |
| AT2G34250
| PredictedAffinity Capture-MS | FSW = 0.2797
| Unknown | PROTEIN TRANSPORT PROTEIN SEC61 PUTATIVE |
| AT2G37760
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3006
| Unknown | ALDO/KETO REDUCTASE FAMILY PROTEIN |
| AT2G41530
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.4480
| Unknown | SFGH (S-FORMYLGLUTATHIONE HYDROLASE) S-FORMYLGLUTATHIONE HYDROLASE/ HYDROLASE ACTING ON ESTER BONDS |
| AT2G43360
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.6132
| Unknown | BIO2 (BIOTIN AUXOTROPH 2) BIOTIN SYNTHASE |
| AT2G45080
| PredictedAffinity Capture-MS | FSW = 0.2964
| Unknown | CYCP31 (CYCLIN P31) CYCLIN-DEPENDENT PROTEIN KINASE |
| AT2G47570
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3837
| Unknown | 60S RIBOSOMAL PROTEIN L18 (RPL18A) |
| AT3G05960
| PredictedAffinity Capture-MS | FSW = 0.1474
| Unknown | STP6 (SUGAR TRANSPORTER 6) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ MONOSACCHARIDE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER |
| AT3G11900
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.5189
| Unknown | ANT1 (AROMATIC AND NEUTRAL TRANSPORTER 1) AMINO ACID TRANSMEMBRANE TRANSPORTER/ AROMATIC AMINO ACID TRANSMEMBRANE TRANSPORTER/ NEUTRAL AMINO ACID TRANSMEMBRANE TRANSPORTER |
| AT3G12690
| PredictedAffinity Capture-MS | FSW = 0.1825
| Unknown | AGC15 (AGC KINASE 15) KINASE |
| AT3G18850
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3579
| Unknown | LPAT5 ACYLTRANSFERASE |
| AT3G19940
| PredictedAffinity Capture-MS | FSW = 0.1280
| Unknown | SUGAR TRANSPORTER PUTATIVE |
| AT3G20650
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2155
| Unknown | MRNA CAPPING ENZYME FAMILY PROTEIN |
| AT3G49880
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.4799
| Unknown | GLYCOSYL HYDROLASE FAMILY PROTEIN 43 |
| AT3G51880
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.5116
| Unknown | HMGB1 (HIGH MOBILITY GROUP B 1) DNA BINDING / CHROMATIN BINDING / STRUCTURAL CONSTITUENT OF CHROMATIN / TRANSCRIPTION FACTOR |
| AT3G53730
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.5656
| Unknown | HISTONE H4 |
| AT3G59410
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.4434
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
| AT4G17380
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2833
| Unknown | MSH4 (MUTS HOMOLOG 4) ATP BINDING / DAMAGED DNA BINDING / MISMATCHED DNA BINDING |
| AT4G19645
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3978
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN INTEGRAL TO MEMBRANE CONTAINS INTERPRO DOMAIN/S TRAM LAG1 AND CLN8 HOMOLOGY (INTERPROIPR006634) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G313002) HAS 401 BLAST HITS TO 401 PROTEINS IN 98 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 186 FUNGI - 102 PLANTS - 84 VIRUSES - 0 OTHER EUKARYOTES - 29 (SOURCE NCBI BLINK) |
| AT4G26810
| PredictedSynthetic LethalityAffinity Capture-MS | FSW = 0.3445
| Unknown | SWIB COMPLEX BAF60B DOMAIN-CONTAINING PROTEIN |
| AT4G35620
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.5098
| Unknown | CYCB22 (CYCLIN B22) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
| AT5G17000
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2864
| Unknown | NADP-DEPENDENT OXIDOREDUCTASE PUTATIVE |
| AT5G19150
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.4588
| Unknown | CARBOHYDRATE KINASE FAMILY |
| AT5G20060
| PredictedAffinity Capture-MS | FSW = 0.4705
| Unknown | PHOSPHOLIPASE/CARBOXYLESTERASE FAMILY PROTEIN |
| AT5G24840
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0477
| Unknown | TRNA (GUANINE-N7-)-METHYLTRANSFERASE |
| AT5G41700
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0539
| Unknown | UBC8 (UBIQUITIN CONJUGATING ENZYME 8) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
| AT5G49560
| PredictedAffinity Capture-MS | FSW = 0.0622
| Unknown | UNKNOWN PROTEIN |
| AT5G61010
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.0640
| Unknown | ATEXO70E2 (EXOCYST SUBUNIT EXO70 FAMILY PROTEIN E2) PROTEIN BINDING |
| AT2G31260
| PredictedAffinity Capture-MS | FSW = 0.0232
| Unknown | APG9 (AUTOPHAGY 9) |
| AT2G32160
| PredictedAffinity Capture-MS | FSW = 0.0257
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 19 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S N2227-LIKE (INTERPROIPR012901) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT2G321701) HAS 325 BLAST HITS TO 315 PROTEINS IN 141 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 95 FUNGI - 130 PLANTS - 30 VIRUSES - 0 OTHER EUKARYOTES - 70 (SOURCE NCBI BLINK) |
| AT2G37540
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0340
| Unknown | SHORT-CHAIN DEHYDROGENASE/REDUCTASE (SDR) FAMILY PROTEIN |
| AT2G42160
| PredictedAffinity Capture-MS | FSW = 0.1853
| Unknown | ZINC FINGER (UBIQUITIN-HYDROLASE) DOMAIN-CONTAINING PROTEIN |
| AT2G46860
| PredictedAffinity Capture-MS | FSW = 0.3815
| Unknown | ATPPA3 (ARABIDOPSIS THALIANA PYROPHOSPHORYLASE 3) INORGANIC DIPHOSPHATASE/ PYROPHOSPHATASE |
| AT4G25860
| PredictedAffinity Capture-MS | FSW = 0.2338
| Unknown | ORP4A (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 4A) OXYSTEROL BINDING |
| AT5G06420
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0879
| Unknown | ZINC FINGER (CCCH-TYPE/C3HC4-TYPE RING FINGER) FAMILY PROTEIN |
| AT5G19820
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3262
| Unknown | EMB2734 (EMBRYO DEFECTIVE 2734) BINDING / LYASE |
| AT5G27640
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.5025
| Unknown | TIF3B1 (TRANSLATION INITIATION FACTOR 3B1) NUCLEIC ACID BINDING / TRANSLATION INITIATION FACTOR |
| AT5G57890
| PredictedAffinity Capture-MS | FSW = 0.3071
| Unknown | ANTHRANILATE SYNTHASE BETA SUBUNIT PUTATIVE |
| AT5G60070
| PredictedGene fusion method | FSW = 0.0134
| Unknown | ANKYRIN REPEAT FAMILY PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
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