Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G18850 - ( LPAT5 acyltransferase )
120 Proteins interacs with AT3G18850Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT4G27090 | PredictedSynthetic Lethality | FSW = 0.0097
| Unknown | 60S RIBOSOMAL PROTEIN L14 (RPL14B) |
AT3G09630 | PredictedPhenotypic Suppression | FSW = 0.0432
| Unknown | 60S RIBOSOMAL PROTEIN L4/L1 (RPL4A) |
AT5G09590 | PredictedSynthetic LethalityPhenotypic Enhancement | FSW = 0.0829
| Unknown | MTHSC70-2 (MITOCHONDRIAL HSP70 2) ATP BINDING |
AT2G45170 | PredictedSynthetic Rescue | FSW = 0.0441
| Unknown | ATATG8E MICROTUBULE BINDING |
AT5G24780 | PredictedAffinity Capture-MS | FSW = 0.2806
| Unknown | VSP1 (VEGETATIVE STORAGE PROTEIN 1) ACID PHOSPHATASE/ TRANSCRIPTION FACTOR BINDING |
AT3G62870 | PredictedSynthetic Lethalitysynthetic growth defect | FSW = 0.0447
| Unknown | 60S RIBOSOMAL PROTEIN L7A (RPL7AB) |
AT2G29990 | PredictedAffinity Capture-MS | FSW = 0.3053
| Unknown | NDA2 (ALTERNATIVE NAD(P)H DEHYDROGENASE 2) FAD BINDING / NADH DEHYDROGENASE/ OXIDOREDUCTASE |
AT5G09660 | PredictedPhenotypic Enhancement | FSW = 0.0927
| Unknown | PMDH2 (PEROXISOMAL NAD-MALATE DEHYDROGENASE 2) MALATE DEHYDROGENASE |
AT3G48170 | PredictedPhenotypic Suppression | FSW = 0.0601
| Unknown | ALDH10A9 3-CHLOROALLYL ALDEHYDE DEHYDROGENASE/ OXIDOREDUCTASE |
AT5G65430 | PredictedPhenotypic Enhancement | FSW = 0.0643
| Unknown | GRF8 (GENERAL REGULATORY FACTOR 8) PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING |
AT2G39290 | PredictedAffinity Capture-MS | FSW = 0.0973
| Unknown | PGP1 (PHOSPHATIDYLGLYCEROLPHOSPHATE SYNTHASE 1) CDP-ALCOHOL PHOSPHATIDYLTRANSFERASE/ CDP-DIACYLGLYCEROL-GLYCEROL-3-PHOSPHATE 3-PHOSPHATIDYLTRANSFERASE |
AT2G31170 | PredictedAffinity Capture-MS | FSW = 0.1001
| Unknown | SYCO ARATH ATP BINDING / AMINOACYL-TRNA LIGASE/ CYSTEINE-TRNA LIGASE/ NUCLEOTIDE BINDING |
AT4G26970 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2794
| Unknown | ACONITATE HYDRATASE/ COPPER ION BINDING |
AT4G35630 | Predictedtwo hybrid | FSW = 0.0086
| Unknown | PSAT O-PHOSPHO-L-SERINE2-OXOGLUTARATE AMINOTRANSFERASE |
AT2G40400 | PredictedPhenotypic Enhancement | FSW = 0.0566
| Unknown | UNKNOWN PROTEIN |
AT5G14320 | PredictedPhenotypic Enhancement | FSW = 0.0276
| Unknown | 30S RIBOSOMAL PROTEIN S13 CHLOROPLAST (CS13) |
AT5G51820 | PredictedPhenotypic Suppression | FSW = 0.0505
| Unknown | PGM (PHOSPHOGLUCOMUTASE) PHOSPHOGLUCOMUTASE |
AT2G43030 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSPhenotypic Enhancement | FSW = 0.1289
| Unknown | RIBOSOMAL PROTEIN L3 FAMILY PROTEIN |
AT4G23430 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3002
| Unknown | SHORT-CHAIN DEHYDROGENASE/REDUCTASE (SDR) FAMILY PROTEIN |
AT3G27300 | Predictedtwo hybrid | FSW = 0.0181
| Unknown | G6PD5 (GLUCOSE-6-PHOSPHATE DEHYDROGENASE 5) GLUCOSE-6-PHOSPHATE DEHYDROGENASE |
AT5G03650 | PredictedAffinity Capture-MS | FSW = 0.1050
| Unknown | SBE22 (STARCH BRANCHING ENZYME 22) 14-ALPHA-GLUCAN BRANCHING ENZYME |
AT3G47370 | PredictedAffinity Capture-MS | FSW = 0.0339
| Unknown | 40S RIBOSOMAL PROTEIN S20 (RPS20B) |
AT1G75840 | PredictedAffinity Capture-MS | FSW = 0.2403
| Unknown | ARAC5 (RAC-LIKE GTP BINDING PROTEIN 5) GTP BINDING / GTPASE |
AT3G48930 | PredictedAffinity Capture-MS | FSW = 0.0354
| Unknown | EMB1080 (EMBRYO DEFECTIVE 1080) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT2G21540 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3579
| Unknown | SFH3 (SEC14-LIKE 3) PHOSPHATIDYLINOSITOL TRANSPORTER |
AT4G36640 | PredictedPhenotypic Enhancement | FSW = 0.0407
| Unknown | SEC14 CYTOSOLIC FACTOR FAMILY PROTEIN / PHOSPHOGLYCERIDE TRANSFER FAMILY PROTEIN |
AT5G52640 | Predictedsynthetic growth defect | FSW = 0.0091
| Unknown | ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING |
AT1G11250 | PredictedAffinity Capture-MS | FSW = 0.0437
| Unknown | SYP125 (SYNTAXIN OF PLANTS 125) SNAP RECEPTOR |
AT5G23900 | PredictedPhenotypic Enhancement | FSW = 0.0239
| Unknown | 60S RIBOSOMAL PROTEIN L13 (RPL13D) |
AT1G04750 | PredictedPhenotypic Enhancement | FSW = 0.1179
| Unknown | VAMP721 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 721) |
AT2G44690 | PredictedSynthetic Lethality | FSW = 0.0291
| Unknown | ARAC9 GTP BINDING |
AT4G22120 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3222
| Unknown | EARLY-RESPONSIVE TO DEHYDRATION PROTEIN-RELATED / ERD PROTEIN-RELATED |
AT1G70490 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2037
| Unknown | ARFA1D GTP BINDING / PHOSPHOLIPASE ACTIVATOR/ PROTEIN BINDING |
AT5G03860 | PredictedSynthetic Rescue | FSW = 0.0284
| Unknown | MLS (MALATE SYNTHASE) MALATE SYNTHASE |
AT1G75560 | PredictedAffinity Capture-MS | FSW = 0.0479
| Unknown | ZINC KNUCKLE (CCHC-TYPE) FAMILY PROTEIN |
AT1G56110 | PredictedPhenotypic Enhancement | FSW = 0.0045
| Unknown | NOP56 (ARABIDOPSIS HOMOLOG OF NUCLEOLAR PROTEIN NOP56) |
AT1G28460 | PredictedPhenotypic Suppression | FSW = 0.0341
| Unknown | AGL59 (AGAMOUS-LIKE 59) DNA BINDING / TRANSCRIPTION FACTOR |
AT2G38880 | PredictedAffinity Capture-MS | FSW = 0.0519
| Unknown | NF-YB1 (NUCLEAR FACTOR Y SUBUNIT B1) TRANSCRIPTION FACTOR |
AT3G20970 | PredictedAffinity Capture-MS | FSW = 0.0807
| Unknown | NFU4 STRUCTURAL MOLECULE |
AT3G60510 | PredictedAffinity Capture-MStwo hybridAffinity Capture-MStwo hybridAffinity Capture-MStwo hybridReconstituted ComplexCo-crystal Structure | FSW = 0.0436
| Unknown | ENOYL-COA HYDRATASE/ISOMERASE FAMILY PROTEIN |
AT3G10920 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2716
| Unknown | MSD1 (MANGANESE SUPEROXIDE DISMUTASE 1) METAL ION BINDING / SUPEROXIDE DISMUTASE |
AT3G18480 | PredictedPhenotypic Enhancement | FSW = 0.0573
| Unknown | ATCASP (ARABIDOPSIS THALIANA CCAAT-DISPLACEMENT PROTEIN ALTERNATIVELY SPLICED PRODUCT) |
AT1G01310 | PredictedAffinity Capture-MS | FSW = 0.0269
| Unknown | ALLERGEN V5/TPX-1-RELATED FAMILY PROTEIN |
AT5G02730 | PredictedPhenotypic Enhancement | FSW = 0.0374
| Unknown | ALLERGEN V5/TPX-1-RELATED FAMILY PROTEIN |
AT5G57625 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3390
| Unknown | ALLERGEN V5/TPX-1-RELATED FAMILY PROTEIN |
AT4G33710 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSPhenotypic Suppression | FSW = 0.3621
| Unknown | PATHOGENESIS-RELATED PROTEIN PUTATIVE |
AT3G07140 | PredictedPhenotypic Enhancement | FSW = 0.0236
| Unknown | GPI TRANSAMIDASE COMPONENT GPI16 SUBUNIT FAMILY PROTEIN |
AT3G08730 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1607
| Unknown | PK1 (PROTEIN-SERINE KINASE 1) KINASE/ PROTEIN BINDING / PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT3G16050 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2492
| Unknown | A37 PROTEIN HETERODIMERIZATION |
AT2G05170 | PredictedPhenotypic Enhancement | FSW = 0.0596
| Unknown | ATVPS11 BINDING / PROTEIN BINDING / TRANSPORTER/ ZINC ION BINDING |
AT3G23580 | PredictedAffinity Capture-MS | FSW = 0.0100
| Unknown | RNR2A (RIBONUCLEOTIDE REDUCTASE 2A) RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE |
AT4G39200 | PredictedPhenotypic Enhancement | FSW = 0.1411
| Unknown | 40S RIBOSOMAL PROTEIN S25 (RPS25E) |
AT4G27070 | PredictedColocalization | FSW = 0.0637
| Unknown | TSB2 (TRYPTOPHAN SYNTHASE BETA-SUBUNIT 2) TRYPTOPHAN SYNTHASE |
AT1G77990 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0973
| Unknown | AST56 SULFATE TRANSMEMBRANE TRANSPORTER |
AT2G29540 | PredictedAffinity Capture-MS | FSW = 0.1084
| Unknown | ATRPC14 (RNA POLYMERASE 14 KDA SUBUNIT) DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ PROTEIN DIMERIZATION |
AT1G19730 | PredictedAffinity Capture-MS | FSW = 0.0655
| Unknown | ATTRX4 OXIDOREDUCTASE ACTING ON SULFUR GROUP OF DONORS DISULFIDE AS ACCEPTOR |
AT1G11800 | Predictedtwo hybrid | FSW = 0.0233
| Unknown | ENDONUCLEASE/EXONUCLEASE/PHOSPHATASE FAMILY PROTEIN |
AT1G24706 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1992
| Unknown | UNKNOWN PROTEIN |
AT1G29150 | PredictedAffinity Capture-MSAffinity Capture-MStwo hybridAffinity Capture-MStwo hybridAffinity Capture-MStwo hybrid | FSW = 0.0193
| Unknown | ATS9 (ARABIDOPSIS NON-ATPASE SUBUNIT 9) |
AT1G34580 | PredictedAffinity Capture-MS | FSW = 0.1130
| Unknown | MONOSACCHARIDE TRANSPORTER PUTATIVE |
AT1G58520 | PredictedAffinity Capture-MS | FSW = 0.3580
| Unknown | HYDROLASE ACTING ON ESTER BONDS / LIPASE |
AT1G60680 | PredictedPhenotypic Suppression | FSW = 0.0769
| Unknown | ALDO/KETO REDUCTASE FAMILY PROTEIN |
AT1G66740 | PredictedPhenotypic Enhancement | FSW = 0.0084
| Unknown | SGA2 |
AT1G75380 | PredictedAffinity Capture-MS | FSW = 0.0132
| Unknown | WOUND-RESPONSIVE PROTEIN-RELATED |
AT1G79820 | PredictedAffinity Capture-MS | FSW = 0.0033
| Unknown | SGB1 (SUPPRESSOR OF G PROTEIN BETA1) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER |
AT1G80710 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0705
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT2G01770 | PredictedAffinity Capture-MS | FSW = 0.3961
| Unknown | VIT1 (VACUOLAR IRON TRANSPORTER 1) IRON ION TRANSMEMBRANE TRANSPORTER |
AT2G15910 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSsynthetic growth defectAffinity Capture-MS | FSW = 0.1428
| Unknown | CSL ZINC FINGER DOMAIN-CONTAINING PROTEIN |
AT2G19910 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3028
| Unknown | RNA-DEPENDENT RNA POLYMERASE FAMILY PROTEIN |
AT2G34250 | PredictedAffinity Capture-MS | FSW = 0.1970
| Unknown | PROTEIN TRANSPORT PROTEIN SEC61 PUTATIVE |
AT2G43360 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3443
| Unknown | BIO2 (BIOTIN AUXOTROPH 2) BIOTIN SYNTHASE |
AT2G46860 | PredictedAffinity Capture-MS | FSW = 0.1611
| Unknown | ATPPA3 (ARABIDOPSIS THALIANA PYROPHOSPHORYLASE 3) INORGANIC DIPHOSPHATASE/ PYROPHOSPHATASE |
AT3G06470 | Predictedtwo hybridPhenotypic Enhancementtwo hybridAffinity Capture-MStwo hybridAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MStwo hybridtwo hybridtwo hybridtwo hybridtwo hybridtwo hybridtwo hybridtwo hybridtwo hybridtwo hybridtwo hybridtwo hybridtwo hybridtwo hybridtwo hybridtwo hybridtwo hybridtwo hybridtwo hybridtwo hybridtwo hybridtwo hybridAffinity Capture-MSAffinity Capture-MSinterologs mappingtwo hybridReconstituted Complextwo hybridCo-purificationinterologs mappingSynthetic RescueCo-crystal StructurePhenotypic Enhancementsynthetic growth defect | FSW = 0.1302
| Unknown | GNS1/SUR4 MEMBRANE FAMILY PROTEIN |
AT3G06483 | PredictedPhenotypic Enhancement | FSW = 0.0644
| Unknown | PDK (PYRUVATE DEHYDROGENASE KINASE) ATP BINDING / HISTIDINE PHOSPHOTRANSFER KINASE/ PYRUVATE DEHYDROGENASE (ACETYL-TRANSFERRING) KINASE |
AT3G11900 | PredictedAffinity Capture-MS | FSW = 0.2975
| Unknown | ANT1 (AROMATIC AND NEUTRAL TRANSPORTER 1) AMINO ACID TRANSMEMBRANE TRANSPORTER/ AROMATIC AMINO ACID TRANSMEMBRANE TRANSPORTER/ NEUTRAL AMINO ACID TRANSMEMBRANE TRANSPORTER |
AT3G12200 | PredictedColocalization | FSW = 0.1245
| Unknown | ATNEK7 (NIMA-RELATED KINASE7) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE |
AT1G06550 | Predictedtwo hybrid | FSW = 0.0094
| Unknown | ENOYL-COA HYDRATASE/ISOMERASE FAMILY PROTEIN |
AT1G21370 | PredictedPhenotypic Enhancement | FSW = 0.0370
| Unknown | UNKNOWN PROTEIN |
AT1G26320 | PredictedPhenotypic Suppression | FSW = 0.0580
| Unknown | NADP-DEPENDENT OXIDOREDUCTASE PUTATIVE |
AT1G27040 | PredictedPhenotypic Suppression | FSW = 0.0654
| Unknown | NITRATE TRANSPORTER PUTATIVE |
AT1G34460 | PredictedAffinity Capture-MS | FSW = 0.0135
| Unknown | CYCB15 (CYCLIN B15) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
AT1G68020 | PredictedPhenotypic Suppression | FSW = 0.0882
| Unknown | ATTPS6 ALPHAALPHA-TREHALOSE-PHOSPHATE SYNTHASE (UDP-FORMING)/ TRANSFERASE TRANSFERRING GLYCOSYL GROUPS / TREHALOSE-PHOSPHATASE |
AT1G75290 | PredictedPhenotypic Enhancement | FSW = 0.0265
| Unknown | OXIDOREDUCTASE ACTING ON NADH OR NADPH |
AT1G78290 | PredictedAffinity Capture-MS | FSW = 0.2815
| Unknown | SERINE/THREONINE PROTEIN KINASE PUTATIVE |
AT2G03040 | PredictedAffinity Capture-MS | FSW = 0.1013
| Unknown | TRANSMEMBRANE PROTEIN-RELATED |
AT2G04660 | PredictedAffinity Capture-MS | FSW = 0.0165
| Unknown | APC2 UBIQUITIN PROTEIN LIGASE BINDING / UBIQUITIN-PROTEIN LIGASE |
AT2G27340 | PredictedAffinity Capture-MS | FSW = 0.0677
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN CONTAINS INTERPRO DOMAIN/S N-ACETYLGLUCOSAMINYL PHOSPHATIDYLINOSITOL DEACETYLASE (INTERPROIPR003737) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS N-ACETYLGLUCOSAMINYL-PHOSPHATIDYLINOSITOL DE-N-ACETYLASE-RELATED (TAIRAT3G581302) HAS 325 BLAST HITS TO 323 PROTEINS IN 156 SPECIES ARCHAE - 0 BACTERIA - 42 METAZOA - 92 FUNGI - 108 PLANTS - 28 VIRUSES - 0 OTHER EUKARYOTES - 55 (SOURCE NCBI BLINK) |
AT2G37760 | PredictedAffinity Capture-MS | FSW = 0.2358
| Unknown | ALDO/KETO REDUCTASE FAMILY PROTEIN |
AT2G41530 | PredictedAffinity Capture-MS | FSW = 0.2978
| Unknown | SFGH (S-FORMYLGLUTATHIONE HYDROLASE) S-FORMYLGLUTATHIONE HYDROLASE/ HYDROLASE ACTING ON ESTER BONDS |
AT2G42005 | Predictedtwo hybridAffinity Capture-Western | FSW = 0.0493
| Unknown | AMINO ACID TRANSPORTER FAMILY PROTEIN |
AT2G45080 | PredictedAffinity Capture-MS | FSW = 0.1967
| Unknown | CYCP31 (CYCLIN P31) CYCLIN-DEPENDENT PROTEIN KINASE |
AT2G46900 | PredictedSynthetic Rescue | FSW = 0.0569
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 24 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S BASIC HELIX-LOOP-HELIX NULP1-TYPE (INTERPROIPR006994) HAS 3014 BLAST HITS TO 2357 PROTEINS IN 239 SPECIES ARCHAE - 2 BACTERIA - 96 METAZOA - 1166 FUNGI - 321 PLANTS - 100 VIRUSES - 47 OTHER EUKARYOTES - 1282 (SOURCE NCBI BLINK) |
AT2G47570 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3145
| Unknown | 60S RIBOSOMAL PROTEIN L18 (RPL18A) |
AT3G11240 | PredictedPhenotypic SuppressionPhenotypic Enhancement | FSW = 0.1068
| Unknown | ATE2 (ARGININE-TRNA PROTEIN TRANSFERASE 2) ARGINYLTRANSFERASE |
AT3G27000 | PredictedSynthetic Lethality | FSW = 0.0046
| Unknown | ARP2 (ACTIN RELATED PROTEIN 2) PROTEIN BINDING / STRUCTURAL CONSTITUENT OF CYTOSKELETON |
AT3G30842 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0781
| Unknown | PDR10 (PLEIOTROPIC DRUG RESISTANCE 10) ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING |
AT3G49880 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3673
| Unknown | GLYCOSYL HYDROLASE FAMILY PROTEIN 43 |
AT3G50780 | PredictedAffinity Capture-MS | FSW = 0.1367
| Unknown | INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS PRLI-INTERACTING FACTOR-RELATED (TAIRAT1G638501) HAS 173 BLAST HITS TO 173 PROTEINS IN 14 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 8 FUNGI - 0 PLANTS - 164 VIRUSES - 0 OTHER EUKARYOTES - 1 (SOURCE NCBI BLINK) |
AT3G51880 | PredictedAffinity Capture-MS | FSW = 0.3398
| Unknown | HMGB1 (HIGH MOBILITY GROUP B 1) DNA BINDING / CHROMATIN BINDING / STRUCTURAL CONSTITUENT OF CHROMATIN / TRANSCRIPTION FACTOR |
AT3G53730 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3239
| Unknown | HISTONE H4 |
AT3G59410 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2579
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
AT4G04700 | PredictedSynthetic Rescue | FSW = 0.0712
| Unknown | CPK27 ATP BINDING / CALCIUM ION BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE |
AT4G10480 | PredictedSynthetic Rescue | FSW = 0.0241
| Unknown | NASCENT POLYPEPTIDE ASSOCIATED COMPLEX ALPHA CHAIN PROTEIN PUTATIVE / ALPHA-NAC PUTATIVE |
AT4G19560 | PredictedPhenotypic Suppression | FSW = 0.1495
| Unknown | CYCT12 CYCLIN-DEPENDENT PROTEIN KINASE |
AT4G19645 | PredictedAffinity Capture-MSPhenotypic Enhancement | FSW = 0.3725
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN INTEGRAL TO MEMBRANE CONTAINS INTERPRO DOMAIN/S TRAM LAG1 AND CLN8 HOMOLOGY (INTERPROIPR006634) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G313002) HAS 401 BLAST HITS TO 401 PROTEINS IN 98 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 186 FUNGI - 102 PLANTS - 84 VIRUSES - 0 OTHER EUKARYOTES - 29 (SOURCE NCBI BLINK) |
AT4G35620 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3058
| Unknown | CYCB22 (CYCLIN B22) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
AT5G04800 | PredictedPhenotypic Suppression | FSW = 0.0689
| Unknown | 40S RIBOSOMAL PROTEIN S17 (RPS17D) |
AT5G19150 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3114
| Unknown | CARBOHYDRATE KINASE FAMILY |
AT5G20340 | PredictedPhenotypic Enhancement | FSW = 0.0621
| Unknown | BG5 (BETA-13-GLUCANASE 5) GLUCAN 13-BETA-GLUCOSIDASE/ HYDROLASE HYDROLYZING O-GLYCOSYL COMPOUNDS |
AT5G27640 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3550
| Unknown | TIF3B1 (TRANSLATION INITIATION FACTOR 3B1) NUCLEIC ACID BINDING / TRANSLATION INITIATION FACTOR |
AT5G38890 | PredictedPhenotypic Enhancement | FSW = 0.0171
| Unknown | EXORIBONUCLEASE-RELATED |
AT5G41700 | PredictedAffinity Capture-MSAffinity Capture-MSPhenotypic Enhancement | FSW = 0.0727
| Unknown | UBC8 (UBIQUITIN CONJUGATING ENZYME 8) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
AT5G65980 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternAffinity Capture-MS | FSW = 0.0733
| Unknown | AUXIN EFFLUX CARRIER FAMILY PROTEIN |
AT5G66610 | PredictedAffinity Capture-MS | FSW = 0.0356
| Unknown | DAR7 (DA1-RELATED PROTEIN 7) ZINC ION BINDING |
AT5G67540 | PredictedPhenotypic Enhancement | FSW = 0.0424
| Unknown | GLYCOSYL HYDROLASE FAMILY PROTEIN 43 |
AT4G00800 | PredictedPhenotypic Suppression | FSW = 0.1009
| Unknown | BINDING / PROTEIN BINDING / ZINC ION BINDING |
AT5G19820 | PredictedAffinity Capture-MS | FSW = 0.1420
| Unknown | EMB2734 (EMBRYO DEFECTIVE 2734) BINDING / LYASE |
AT5G20060 | PredictedAffinity Capture-MS | FSW = 0.2839
| Unknown | PHOSPHOLIPASE/CARBOXYLESTERASE FAMILY PROTEIN |
AT5G64760 | PredictedPhenotypic Enhancement | FSW = 0.0818
| Unknown | RPN5B (REGULATORY PARTICLE NON-ATPASE SUBUNIT 5B) |
AT1G75020 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.0440
| Unknown | LPAT4 (LYSOPHOSPHATIDYL ACYLTRANSFERASE 4) ACYLTRANSFERASE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454