Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G20340 - ( BG5 (beta-13-glucanase 5) glucan 13-beta-glucosidase/ hydrolase hydrolyzing O-glycosyl compounds )
47 Proteins interacs with AT5G20340Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT2G17360 | PredictedPhenotypic Enhancement | FSW = 0.1067
| Unknown | 40S RIBOSOMAL PROTEIN S4 (RPS4A) |
AT1G20260 | PredictedSynthetic LethalityPhenotypic Enhancement | FSW = 0.1952
| Unknown | HYDROGEN ION TRANSPORTING ATP SYNTHASE ROTATIONAL MECHANISM / HYDROLASE ACTING ON ACID ANHYDRIDES CATALYZING TRANSMEMBRANE MOVEMENT OF SUBSTANCES / PROTON-TRANSPORTING ATPASE ROTATIONAL MECHANISM |
AT3G49360 | PredictedPhenotypic Enhancement | FSW = 0.0200
| Unknown | GLUCOSAMINE/GALACTOSAMINE-6-PHOSPHATE ISOMERASE FAMILY PROTEIN |
AT3G22890 | PredictedPhenotypic Suppression | FSW = 0.1693
| Unknown | APS1 (ATP SULFURYLASE 1) SULFATE ADENYLYLTRANSFERASE (ATP) |
AT5G09660 | PredictedPhenotypic Enhancement | FSW = 0.2336
| Unknown | PMDH2 (PEROXISOMAL NAD-MALATE DEHYDROGENASE 2) MALATE DEHYDROGENASE |
AT2G40400 | PredictedPhenotypic Enhancement | FSW = 0.0186
| Unknown | UNKNOWN PROTEIN |
AT1G64190 | PredictedPhenotypic Enhancement | FSW = 0.1855
| Unknown | 6-PHOSPHOGLUCONATE DEHYDROGENASE FAMILY PROTEIN |
AT5G06290 | PredictedPhenotypic Enhancement | FSW = 0.0457
| Unknown | 2-CYS PRX B (2-CYSTEINE PEROXIREDOXIN B) ANTIOXIDANT/ PEROXIREDOXIN |
AT1G10070 | Predictedbiochemical | FSW = 0.0860
| Unknown | ATBCAT-2 (ARABIDOPSIS THALIANA BRANCHED-CHAIN AMINO ACID TRANSAMINASE 2) BRANCHED-CHAIN-AMINO-ACID TRANSAMINASE/ CATALYTIC |
AT4G04340 | PredictedPhenotypic Enhancement | FSW = 0.1500
| Unknown | EARLY-RESPONSIVE TO DEHYDRATION PROTEIN-RELATED / ERD PROTEIN-RELATED |
AT1G04750 | Predictedsynthetic growth defectSynthetic Lethality | FSW = 0.2359
| Unknown | VAMP721 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 721) |
AT4G18800 | PredictedSynthetic Rescue | FSW = 0.1013
| Unknown | ATRABA1D (ARABIDOPSIS RAB GTPASE HOMOLOG A1D) GTP BINDING |
AT1G21700 | PredictedPhenotypic EnhancementPhenotypic Enhancement | FSW = 0.1784
| Unknown | ATSWI3C (SWITCH/SUCROSE NONFERMENTING 3C) DNA BINDING |
AT5G60980 | PredictedPhenotypic Enhancement | FSW = 0.1224
| Unknown | NUCLEAR TRANSPORT FACTOR 2 (NTF2) FAMILY PROTEIN / RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN |
AT4G33710 | PredictedPhenotypic Suppression | FSW = 0.0589
| Unknown | PATHOGENESIS-RELATED PROTEIN PUTATIVE |
AT1G05180 | PredictedPhenotypic Enhancement | FSW = 0.1304
| Unknown | AXR1 (AUXIN RESISTANT 1) SMALL PROTEIN ACTIVATING ENZYME |
AT1G21370 | PredictedPhenotypic Suppression | FSW = 0.2179
| Unknown | UNKNOWN PROTEIN |
AT1G26690 | Predictedsynthetic growth defectsynthetic growth defectPhenotypic EnhancementSynthetic RescuePhenotypic Enhancementsynthetic growth defectSynthetic Lethality | FSW = 0.2262
| Unknown | EMP24/GP25L/P24 FAMILY PROTEIN |
AT1G27040 | PredictedPhenotypic Suppression | FSW = 0.1134
| Unknown | NITRATE TRANSPORTER PUTATIVE |
AT1G27320 | PredictedPhenotypic Enhancement | FSW = 0.0683
| Unknown | AHK3 (ARABIDOPSIS HISTIDINE KINASE 3) CYTOKININ RECEPTOR/ OSMOSENSOR/ PROTEIN HISTIDINE KINASE |
AT1G35350 | Predictedsynthetic growth defect | FSW = 0.2484
| Unknown | LOCATED IN INTEGRAL TO MEMBRANE EXPRESSED IN 18 PLANT STRUCTURES EXPRESSED DURING 9 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S EXS C-TERMINAL (INTERPROIPR004342) SPX N-TERMINAL (INTERPROIPR004331) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS EXS FAMILY PROTEIN / ERD1/XPR1/SYG1 FAMILY PROTEIN (TAIRAT1G267301) HAS 734 BLAST HITS TO 697 PROTEINS IN 158 SPECIES ARCHAE - 0 BACTERIA - 21 METAZOA - 234 FUNGI - 245 PLANTS - 125 VIRUSES - 0 OTHER EUKARYOTES - 109 (SOURCE NCBI BLINK) |
AT1G54560 | PredictedPhenotypic Enhancement | FSW = 0.0811
| Unknown | XIE MOTOR/ PROTEIN BINDING |
AT1G80710 | PredictedPhenotypic Enhancement | FSW = 0.0941
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT3G12200 | PredictedAffinity Capture-WesternPhenotypic Enhancement | FSW = 0.1461
| Unknown | ATNEK7 (NIMA-RELATED KINASE7) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE |
AT3G18850 | PredictedPhenotypic Enhancement | FSW = 0.0621
| Unknown | LPAT5 ACYLTRANSFERASE |
AT3G22290 | Predictedsynthetic growth defect | FSW = 0.2469
| Unknown | UNKNOWN PROTEIN |
AT3G47290 | Predictedtwo hybridtwo hybridAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternSynthetic RescuePhenotypic SuppressionAffinity Capture-MS | FSW = 0.3988
| Unknown | PHOSPHOINOSITIDE-SPECIFIC PHOSPHOLIPASE C FAMILY PROTEIN |
AT4G21490 | Predictedsynthetic growth defectPhenotypic EnhancementSynthetic Lethality | FSW = 0.2099
| Unknown | NDB3 NADH DEHYDROGENASE |
AT4G27130 | Predictedsynthetic growth defectSynthetic Lethality | FSW = 0.2461
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1 PUTATIVE |
AT5G01430 | PredictedPhenotypic Enhancement | FSW = 0.1192
| Unknown | GOT1-LIKE FAMILY PROTEIN |
AT5G01770 | PredictedPhenotypic Suppressionsynthetic growth defect | FSW = 0.2095
| Unknown | RAPTOR2 (RAPTOR2) BINDING / NUCLEOTIDE BINDING |
AT5G13860 | PredictedSynthetic Rescue | FSW = 0.1231
| Unknown | ELC-LIKE (ELCH-LIKE) SMALL CONJUGATING PROTEIN LIGASE |
AT5G15070 | PredictedAffinity Capture-MS | FSW = 0.0307
| Unknown | ACID PHOSPHATASE/ OXIDOREDUCTASE/ TRANSITION METAL ION BINDING |
AT5G16040 | PredictedAffinity Capture-MS | FSW = 0.0167
| Unknown | REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY PROTEIN |
AT5G16980 | Predictedsynthetic growth defect | FSW = 0.2807
| Unknown | NADP-DEPENDENT OXIDOREDUCTASE PUTATIVE |
AT5G17860 | PredictedPhenotypic EnhancementPhenotypic Enhancement | FSW = 0.2530
| Unknown | CAX7 (CALCIUM EXCHANGER 7) CALCIUMSODIUM ANTIPORTER/ CATIONCATION ANTIPORTER |
AT1G10210 | Predictedbiochemical | FSW = 0.0934
| Unknown | ATMPK1 (MITOGEN-ACTIVATED PROTEIN KINASE 1) MAP KINASE/ KINASE |
AT1G47830 | PredictedPhenotypic Enhancement | FSW = 0.2906
| Unknown | CLATHRIN COAT ASSEMBLY PROTEIN PUTATIVE |
AT1G66590 | Predictedtwo hybrid | FSW = 0.1937
| Unknown | COX19 FAMILY PROTEIN |
AT2G32050 | Predictedsynthetic growth defect | FSW = 0.1150
| Unknown | CELL CYCLE CONTROL PROTEIN-RELATED |
AT3G53880 | PredictedPhenotypic Enhancement | FSW = 0.0256
| Unknown | ALDO/KETO REDUCTASE FAMILY PROTEIN |
AT4G14320 | Predictedtwo hybrid | FSW = 0.0650
| Unknown | 60S RIBOSOMAL PROTEIN L36A/L44 (RPL36AB) |
AT5G45620 | Predictedsynthetic growth defectsynthetic growth defectPhenotypic Enhancementsynthetic growth defectPhenotypic EnhancementPhenotypic Enhancementsynthetic growth defectsynthetic growth defectSynthetic LethalityPhenotypic EnhancementSynthetic Rescue | FSW = 0.2201
| Unknown | 26S PROTEASOME REGULATORY SUBUNIT PUTATIVE (RPN9) |
AT5G49970 | PredictedPhenotypic Suppression | FSW = 0.2111
| Unknown | ATPPOX (A THALIANA PYRIDOXIN (PYRODOXAMINE) 5-PHOSPHATE OXIDASE) PYRIDOXAMINE-PHOSPHATE OXIDASE |
AT5G65980 | PredictedSynthetic Rescue | FSW = 0.0860
| Unknown | AUXIN EFFLUX CARRIER FAMILY PROTEIN |
AT1G33220 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.0379
| Unknown | BETA-13-GLUCANASE PUTATIVE |
AT5G20560 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.0699
| Unknown | BETA-13-GLUCANASE PUTATIVE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454