Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G47830 - ( clathrin coat assembly protein putative )
113 Proteins interacs with AT1G47830Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT2G33120 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0532
| Unknown | SAR1 (SYNAPTOBREVIN-RELATED PROTEIN 1) |
AT2G17360 | PredictedPhenotypic Enhancement | FSW = 0.1276
| Unknown | 40S RIBOSOMAL PROTEIN S4 (RPS4A) |
AT3G47520 | Predictedsynthetic growth defect | FSW = 0.0438
| Unknown | MDH (MALATE DEHYDROGENASE) L-MALATE DEHYDROGENASE/ BINDING / CATALYTIC/ MALATE DEHYDROGENASE/ OXIDOREDUCTASE/ OXIDOREDUCTASE ACTING ON THE CH-OH GROUP OF DONORS NAD OR NADP AS ACCEPTOR |
AT1G20260 | PredictedSynthetic LethalityPhenotypic Enhancement | FSW = 0.1510
| Unknown | HYDROGEN ION TRANSPORTING ATP SYNTHASE ROTATIONAL MECHANISM / HYDROLASE ACTING ON ACID ANHYDRIDES CATALYZING TRANSMEMBRANE MOVEMENT OF SUBSTANCES / PROTON-TRANSPORTING ATPASE ROTATIONAL MECHANISM |
AT5G07090 | PredictedPhenotypic Enhancement | FSW = 0.0682
| Unknown | 40S RIBOSOMAL PROTEIN S4 (RPS4B) |
AT4G25100 | Predictedtwo hybrid | FSW = 0.0088
| Unknown | FSD1 (FE SUPEROXIDE DISMUTASE 1) COPPER ION BINDING / SUPEROXIDE DISMUTASE |
AT3G08530 | Predictedsynthetic growth defect | FSW = 0.0362
| Unknown | CLATHRIN HEAVY CHAIN PUTATIVE |
AT3G22890 | Predictedsynthetic growth defectsynthetic growth defect | FSW = 0.2135
| Unknown | APS1 (ATP SULFURYLASE 1) SULFATE ADENYLYLTRANSFERASE (ATP) |
AT5G09660 | PredictedAffinity Capture-Westerninterologs mappingtwo hybridtwo hybridtwo hybridReconstituted Complextwo hybridSynthetic RescueReconstituted ComplexReconstituted ComplexReconstituted ComplexReconstituted ComplexSynthetic RescuePhenotypic Suppressioninterologs mapping | FSW = 0.4262
| Unknown | PMDH2 (PEROXISOMAL NAD-MALATE DEHYDROGENASE 2) MALATE DEHYDROGENASE |
AT3G48170 | PredictedPhenotypic Enhancement | FSW = 0.1531
| Unknown | ALDH10A9 3-CHLOROALLYL ALDEHYDE DEHYDROGENASE/ OXIDOREDUCTASE |
AT1G74710 | Predictedsynthetic growth defect | FSW = 0.1506
| Unknown | ISOCHORISMATE SYNTHASE 1 (ICS1) / ISOCHORISMATE MUTASE |
AT1G77750 | PredictedPhenotypic Enhancementsynthetic growth defect | FSW = 0.0442
| Unknown | 30S RIBOSOMAL PROTEIN S13 CHLOROPLAST PUTATIVE |
AT3G58610 | PredictedSynthetic RescueSynthetic Rescue | FSW = 0.1980
| Unknown | KETOL-ACID REDUCTOISOMERASE |
AT3G56160 | PredictedSynthetic LethalitySynthetic Rescue | FSW = 0.1024
| Unknown | BILE ACIDSODIUM SYMPORTER |
AT1G64190 | PredictedPhenotypic Enhancement | FSW = 0.1574
| Unknown | 6-PHOSPHOGLUCONATE DEHYDROGENASE FAMILY PROTEIN |
AT3G52150 | Predictedtwo hybrid | FSW = 0.0034
| Unknown | RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN |
AT5G15450 | Predictedsynthetic growth defect | FSW = 0.1559
| Unknown | CLPB3 (CASEIN LYTIC PROTEINASE B3) ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING |
AT4G28706 | PredictedAffinity Capture-MS | FSW = 0.0191
| Unknown | PFKB-TYPE CARBOHYDRATE KINASE FAMILY PROTEIN |
AT1G10070 | PredictedAffinity Capture-MS | FSW = 0.0588
| Unknown | ATBCAT-2 (ARABIDOPSIS THALIANA BRANCHED-CHAIN AMINO ACID TRANSAMINASE 2) BRANCHED-CHAIN-AMINO-ACID TRANSAMINASE/ CATALYTIC |
AT3G18790 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0745
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CHLOROPLAST EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S ISY1-LIKE SPLICING (INTERPROIPR009360) HAS 1075 BLAST HITS TO 879 PROTEINS IN 176 SPECIES ARCHAE - 8 BACTERIA - 11 METAZOA - 379 FUNGI - 177 PLANTS - 27 VIRUSES - 9 OTHER EUKARYOTES - 464 (SOURCE NCBI BLINK) |
AT3G47370 | Predictedtwo hybrid | FSW = 0.0037
| Unknown | 40S RIBOSOMAL PROTEIN S20 (RPS20B) |
AT3G02600 | PredictedAffinity Capture-MS | FSW = 0.0171
| Unknown | LPP3 (LIPID PHOSPHATE PHOSPHATASE 3) PHOSPHATIDATE PHOSPHATASE |
AT5G52640 | Predictedsynthetic growth defect | FSW = 0.0096
| Unknown | ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING |
AT4G04340 | PredictedPhenotypic Suppression | FSW = 0.1924
| Unknown | EARLY-RESPONSIVE TO DEHYDRATION PROTEIN-RELATED / ERD PROTEIN-RELATED |
AT5G47700 | Predictedsynthetic growth defect | FSW = 0.0456
| Unknown | 60S ACIDIC RIBOSOMAL PROTEIN P1 (RPP1C) |
AT1G04750 | PredictedSynthetic LethalitySynthetic LethalitySynthetic LethalitySynthetic LethalitySynthetic LethalityPhenotypic Enhancement | FSW = 0.3399
| Unknown | VAMP721 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 721) |
AT2G44690 | PredictedSynthetic Lethalitytwo hybrid | FSW = 0.0405
| Unknown | ARAC9 GTP BINDING |
AT3G11730 | PredictedAffinity Capture-MS | FSW = 0.0244
| Unknown | ATFP8 GTP BINDING / GTP-DEPENDENT PROTEIN BINDING / MYOSIN XI TAIL BINDING |
AT4G11380 | PredictedAffinity Capture-MSin vitro | FSW = 0.0162
| Unknown | BETA-ADAPTIN PUTATIVE |
AT5G22770 | Predictedtwo hybridAffinity Capture-MSAffinity Capture-MSinteraction predictionEnriched domain pair | FSW = 0.0085
| Unknown | ALPHA-ADR (ALPHA-ADAPTIN) BINDING / PROTEIN BINDING / PROTEIN TRANSPORTER |
AT3G49370 | PredictedPhenotypic Enhancement | FSW = 0.0807
| Unknown | CALCIUM-DEPENDENT PROTEIN KINASE PUTATIVE / CDPK PUTATIVE |
AT4G14350 | PredictedPhenotypic EnhancementPhenotypic Enhancementsynthetic growth defect | FSW = 0.0961
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
AT4G33090 | PredictedPhenotypic Enhancement | FSW = 0.0674
| Unknown | APM1 (AMINOPEPTIDASE M1) AMINOPEPTIDASE |
AT2G27530 | PredictedSynthetic Lethality | FSW = 0.0321
| Unknown | PGY1 (PIGGYBACK1) RNA BINDING / STRUCTURAL CONSTITUENT OF RIBOSOME |
AT4G18800 | PredictedPhenotypic Enhancement | FSW = 0.1037
| Unknown | ATRABA1D (ARABIDOPSIS RAB GTPASE HOMOLOG A1D) GTP BINDING |
AT1G21700 | PredictedSynthetic RescuePhenotypic SuppressionPhenotypic SuppressionSynthetic RescuePhenotypic SuppressionPhenotypic EnhancementSynthetic RescueSynthetic Rescuesynthetic growth defectPhenotypic EnhancementSynthetic RescuePhenotypic Suppression | FSW = 0.2402
| Unknown | ATSWI3C (SWITCH/SUCROSE NONFERMENTING 3C) DNA BINDING |
AT4G34430 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0431
| Unknown | CHB3 DNA BINDING / TRANSCRIPTION FACTOR/ ZINC ION BINDING |
AT2G36170 | PredictedSynthetic Lethality | FSW = 0.0869
| Unknown | UBIQUITIN EXTENSION PROTEIN 2 (UBQ2) / 60S RIBOSOMAL PROTEIN L40 (RPL40A) |
AT3G01020 | Predictedsynthetic growth defect | FSW = 0.0839
| Unknown | ISU2 (ISCU-LIKE 2) STRUCTURAL MOLECULE |
AT3G14270 | PredictedPhenotypic SuppressionAffinity Capture-MS | FSW = 0.0693
| Unknown | PHOSPHATIDYLINOSITOL-4-PHOSPHATE 5-KINASE FAMILY PROTEIN |
AT1G64880 | PredictedSynthetic Lethality | FSW = 0.1809
| Unknown | RIBOSOMAL PROTEIN S5 FAMILY PROTEIN |
AT5G02730 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0765
| Unknown | ALLERGEN V5/TPX-1-RELATED FAMILY PROTEIN |
AT3G54840 | PredictedPhenotypic Enhancement | FSW = 0.1620
| Unknown | ARA6 GTP BINDING / GTPASE |
AT3G07140 | Predictedsynthetic growth defect | FSW = 0.0445
| Unknown | GPI TRANSAMIDASE COMPONENT GPI16 SUBUNIT FAMILY PROTEIN |
AT2G03120 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0411
| Unknown | ATSPP (ARABIDOPSIS SIGNAL PEPTIDE PEPTIDASE) ASPARTIC-TYPE ENDOPEPTIDASE |
AT1G15960 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0463
| Unknown | NRAMP6 INORGANIC ANION TRANSMEMBRANE TRANSPORTER/ METAL ION TRANSMEMBRANE TRANSPORTER |
AT3G02560 | PredictedSynthetic Lethalitysynthetic growth defect | FSW = 0.0567
| Unknown | 40S RIBOSOMAL PROTEIN S7 (RPS7B) |
AT1G62800 | PredictedPhenotypic EnhancementSynthetic Lethality | FSW = 0.1835
| Unknown | ASP4 (ASPARTATE AMINOTRANSFERASE 4) CATALYTIC/ PYRIDOXAL PHOSPHATE BINDING / TRANSAMINASE/ TRANSFERASE TRANSFERRING NITROGENOUS GROUPS |
AT3G13900 | PredictedPhenotypic EnhancementAffinity Capture-MSPhenotypic EnhancementAffinity Capture-MSSynthetic Rescue | FSW = 0.1519
| Unknown | ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF IONS PHOSPHORYLATIVE MECHANISM |
AT1G05180 | PredictedPhenotypic EnhancementPhenotypic EnhancementPhenotypic EnhancementPhenotypic EnhancementPhenotypic Enhancement | FSW = 0.1772
| Unknown | AXR1 (AUXIN RESISTANT 1) SMALL PROTEIN ACTIVATING ENZYME |
AT4G17190 | Predictedsynthetic growth defect | FSW = 0.1257
| Unknown | FPS2 (FARNESYL DIPHOSPHATE SYNTHASE 2) DIMETHYLALLYLTRANSTRANSFERASE/ GERANYLTRANSTRANSFERASE |
AT5G46025 | PredictedAffinity Capture-MS | FSW = 0.0090
| Unknown | RAS-RELATED GTP-BINDING FAMILY PROTEIN |
AT4G32700 | PredictedAffinity Capture-MS | FSW = 0.0087
| Unknown | DNA-DIRECTED DNA POLYMERASE FAMILY PROTEIN |
AT5G43910 | PredictedAffinity Capture-MS | FSW = 0.0187
| Unknown | PFKB-TYPE CARBOHYDRATE KINASE FAMILY PROTEIN |
AT1G20693 | Predictedsynthetic growth defect | FSW = 0.2140
| Unknown | HMGB2 (HIGH MOBILITY GROUP B 2) DNA BINDING / CHROMATIN BINDING / STRUCTURAL CONSTITUENT OF CHROMATIN / TRANSCRIPTION FACTOR |
AT1G21370 | PredictedSynthetic Lethality | FSW = 0.1904
| Unknown | UNKNOWN PROTEIN |
AT1G25155 | Predictedsynthetic growth defect | FSW = 0.1899
| Unknown | ANTHRANILATE SYNTHASE BETA SUBUNIT PUTATIVE |
AT1G26140 | PredictedAffinity Capture-MS | FSW = 0.0961
| Unknown | UNKNOWN PROTEIN |
AT1G26690 | Predictedinterologs mappingPhenotypic Enhancement | FSW = 0.2082
| Unknown | EMP24/GP25L/P24 FAMILY PROTEIN |
AT1G35350 | Predictedsynthetic growth defectSynthetic Lethality | FSW = 0.3476
| Unknown | LOCATED IN INTEGRAL TO MEMBRANE EXPRESSED IN 18 PLANT STRUCTURES EXPRESSED DURING 9 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S EXS C-TERMINAL (INTERPROIPR004342) SPX N-TERMINAL (INTERPROIPR004331) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS EXS FAMILY PROTEIN / ERD1/XPR1/SYG1 FAMILY PROTEIN (TAIRAT1G267301) HAS 734 BLAST HITS TO 697 PROTEINS IN 158 SPECIES ARCHAE - 0 BACTERIA - 21 METAZOA - 234 FUNGI - 245 PLANTS - 125 VIRUSES - 0 OTHER EUKARYOTES - 109 (SOURCE NCBI BLINK) |
AT1G44180 | PredictedSynthetic Lethality | FSW = 0.2141
| Unknown | AMINOACYLASE PUTATIVE / N-ACYL-L-AMINO-ACID AMIDOHYDROLASE PUTATIVE |
AT1G11510 | Predictedsynthetic growth defect | FSW = 0.1626
| Unknown | DNA-BINDING STOREKEEPER PROTEIN-RELATED |
AT1G13580 | PredictedPhenotypic Enhancement | FSW = 0.1054
| Unknown | LAG13 (LAG1 LONGEVITY ASSURANCE HOMOLOG 3) |
AT1G27040 | PredictedPhenotypic Enhancement | FSW = 0.1410
| Unknown | NITRATE TRANSPORTER PUTATIVE |
AT1G66590 | PredictedSynthetic RescueSynthetic RescuePhenotypic EnhancementSynthetic Rescuetwo hybridAffinity Capture-WesternSynthetic RescueSynthetic RescueSynthetic RescueSynthetic RescueSynthetic RescueSynthetic Rescuetwo hybridSynthetic RescueSynthetic LethalityPhenotypic SuppressionAffinity Capture-WesternPhenotypic Enhancementsynthetic growth defect | FSW = 0.3683
| Unknown | COX19 FAMILY PROTEIN |
AT1G68390 | PredictedAffinity Capture-MS | FSW = 0.0066
| Unknown | UNKNOWN PROTEIN |
AT1G78770 | PredictedPhenotypic EnhancementPhenotypic Enhancementsynthetic growth defect | FSW = 0.2284
| Unknown | CELL DIVISION CYCLE FAMILY PROTEIN |
AT3G01100 | PredictedPhenotypic Enhancement | FSW = 0.1231
| Unknown | HYP1 (HYPOTHETICAL PROTEIN 1) |
AT3G11240 | PredictedPhenotypic Enhancement | FSW = 0.0693
| Unknown | ATE2 (ARGININE-TRNA PROTEIN TRANSFERASE 2) ARGINYLTRANSFERASE |
AT3G18660 | Predictedsynthetic growth defectPhenotypic Enhancement | FSW = 0.1694
| Unknown | PGSIP1 (PLANT GLYCOGENIN-LIKE STARCH INITIATION PROTEIN 1) TRANSFERASE TRANSFERRING GLYCOSYL GROUPS |
AT3G22290 | Predictedsynthetic growth defectSynthetic Lethality | FSW = 0.3545
| Unknown | UNKNOWN PROTEIN |
AT3G24010 | Predictedsynthetic growth defectSynthetic Lethality | FSW = 0.1965
| Unknown | ING1 (INHIBITOR OF GROWTH 1) DNA BINDING / METHYLATED HISTONE RESIDUE BINDING |
AT3G25900 | Predictedsynthetic growth defectPhenotypic Enhancement | FSW = 0.2306
| Unknown | HMT-1 HOMOCYSTEINE S-METHYLTRANSFERASE |
AT3G45240 | Predictedsynthetic growth defect | FSW = 0.3045
| Unknown | GRIK1 (GEMINIVIRUS REP INTERACTING KINASE 1) KINASE |
AT3G47290 | PredictedPhenotypic Enhancement | FSW = 0.2024
| Unknown | PHOSPHOINOSITIDE-SPECIFIC PHOSPHOLIPASE C FAMILY PROTEIN |
AT3G47610 | PredictedSynthetic Rescue | FSW = 0.2063
| Unknown | TRANSCRIPTION REGULATOR/ ZINC ION BINDING |
AT3G53030 | Predictedsynthetic growth defectSynthetic Lethality | FSW = 0.2000
| Unknown | SRPK4 (SER/ARG-RICH PROTEIN KINASE 4) KINASE/ PROTEIN KINASE |
AT4G21490 | PredictedPhenotypic EnhancementPhenotypic Enhancement | FSW = 0.4623
| Unknown | NDB3 NADH DEHYDROGENASE |
AT4G27130 | Predictedsynthetic growth defectSynthetic Lethality | FSW = 0.3465
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1 PUTATIVE |
AT4G29580 | Predictedsynthetic growth defectPhenotypic Enhancementsynthetic growth defectPhenotypic Enhancement | FSW = 0.2778
| Unknown | CYTIDINE DEAMINASE PUTATIVE / CYTIDINE AMINOHYDROLASE PUTATIVE |
AT5G01330 | Predictedsynthetic growth defect | FSW = 0.0192
| Unknown | PDC3 (PYRUVATE DECARBOXYLASE-3) CARBOXY-LYASE/ CATALYTIC/ MAGNESIUM ION BINDING / PYRUVATE DECARBOXYLASE/ THIAMIN PYROPHOSPHATE BINDING / TRANSFERASE |
AT5G08160 | PredictedPhenotypic Enhancement | FSW = 0.0491
| Unknown | ATPK3 ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT5G16170 | PredictedSynthetic LethalitySynthetic LethalitySynthetic Lethalitysynthetic growth defectPhenotypic Enhancement | FSW = 0.2660
| Unknown | UNKNOWN PROTEIN |
AT5G17860 | Predictedinterologs mappingSynthetic LethalityPhenotypic Suppression | FSW = 0.3423
| Unknown | CAX7 (CALCIUM EXCHANGER 7) CALCIUMSODIUM ANTIPORTER/ CATIONCATION ANTIPORTER |
AT5G26250 | PredictedAffinity Capture-MS | FSW = 0.0784
| Unknown | SUGAR TRANSPORTER PUTATIVE |
AT5G38820 | PredictedPhenotypic Suppression | FSW = 0.0704
| Unknown | AMINO ACID TRANSPORTER FAMILY PROTEIN |
AT5G45620 | Predictedsynthetic growth defectPhenotypic Enhancement | FSW = 0.3117
| Unknown | 26S PROTEASOME REGULATORY SUBUNIT PUTATIVE (RPN9) |
AT5G60340 | Predictedinterologs mappinginterologs mappingPhenotypic Enhancement | FSW = 0.0428
| Unknown | MAOC-LIKE DEHYDRATASE DOMAIN-CONTAINING PROTEIN |
AT1G60680 | Predictedsynthetic growth defect | FSW = 0.1637
| Unknown | ALDO/KETO REDUCTASE FAMILY PROTEIN |
AT2G03250 | Predictedsynthetic growth defect | FSW = 0.1875
| Unknown | EXS FAMILY PROTEIN / ERD1/XPR1/SYG1 FAMILY PROTEIN |
AT2G03690 | PredictedAffinity Capture-MS | FSW = 0.0164
| Unknown | COENZYME Q BIOSYNTHESIS COQ4 FAMILY PROTEIN / UBIQUINONE BIOSYNTHESIS COQ4 FAMILY PROTEIN |
AT2G22040 | PredictedAffinity Capture-MS | FSW = 0.0266
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT2G24960 | Predictedsynthetic growth defect | FSW = 0.1430
| Unknown | UNKNOWN PROTEIN |
AT2G30800 | Predictedsynthetic growth defect | FSW = 0.0613
| Unknown | HVT1 (HELICASE IN VASCULAR TISSUE AND TAPETUM) ATP BINDING / HELICASE/ NUCLEIC ACID BINDING |
AT2G33560 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0480
| Unknown | SPINDLE CHECKPOINT PROTEIN-RELATED |
AT2G39590 | PredictedAffinity Capture-MS | FSW = 0.0195
| Unknown | 40S RIBOSOMAL PROTEIN S15A (RPS15AC) |
AT3G02320 | PredictedSynthetic Lethality | FSW = 0.1765
| Unknown | RNA BINDING / TRNA (GUANINE-N2-)-METHYLTRANSFERASE |
AT3G21460 | PredictedSynthetic Lethality | FSW = 0.1131
| Unknown | ELECTRON CARRIER/ PROTEIN DISULFIDE OXIDOREDUCTASE |
AT3G53880 | PredictedSynthetic Rescue | FSW = 0.0246
| Unknown | ALDO/KETO REDUCTASE FAMILY PROTEIN |
AT4G21800 | PredictedAffinity Capture-MS | FSW = 0.0076
| Unknown | QQT2 (QUATRE-QUART2) ATP BINDING / NUCLEOTIDE BINDING |
AT4G22140 | Predictedsynthetic growth defect | FSW = 0.0696
| Unknown | DNA BINDING / PROTEIN BINDING / ZINC ION BINDING |
AT4G37680 | PredictedAffinity Capture-MS | FSW = 0.0405
| Unknown | HHP4 (HEPTAHELICAL PROTEIN 4) RECEPTOR |
AT5G01770 | PredictedPhenotypic Enhancement | FSW = 0.3183
| Unknown | RAPTOR2 (RAPTOR2) BINDING / NUCLEOTIDE BINDING |
AT5G05010 | Predictedtwo hybrid | FSW = 0.0055
| Unknown | CLATHRIN ADAPTOR COMPLEXES MEDIUM SUBUNIT-RELATED |
AT5G06130 | Predictedtwo hybrid | FSW = 0.0195
| Unknown | CHAPERONE PROTEIN DNAJ-RELATED |
AT5G11500 | PredictedDosage Growth Defectinterologs mapping | FSW = 0.1838
| Unknown | UNKNOWN PROTEIN |
AT5G20340 | PredictedPhenotypic Enhancement | FSW = 0.2906
| Unknown | BG5 (BETA-13-GLUCANASE 5) GLUCAN 13-BETA-GLUCOSIDASE/ HYDROLASE HYDROLYZING O-GLYCOSYL COMPOUNDS |
AT5G20560 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0597
| Unknown | BETA-13-GLUCANASE PUTATIVE |
AT5G49970 | Predictedsynthetic growth defect | FSW = 0.1799
| Unknown | ATPPOX (A THALIANA PYRIDOXIN (PYRODOXAMINE) 5-PHOSPHATE OXIDASE) PYRIDOXAMINE-PHOSPHATE OXIDASE |
AT5G51180 | Predictedtwo hybrid | FSW = 0.0186
| Unknown | UNKNOWN PROTEIN |
AT2G17380 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.0579
| Unknown | AP19 PROTEIN BINDING / PROTEIN TRANSPORTER |
AT2G19790 | PredictedPhylogenetic profile method | FSW = 0.0678
| Unknown | CLATHRIN ADAPTOR COMPLEX SMALL CHAIN FAMILY PROTEIN |
AT4G35410 | PredictedPhylogenetic profile method | FSW = 0.0258
| Unknown | CLATHRIN ADAPTOR COMPLEX SMALL CHAIN FAMILY PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454