Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G25900 - ( HMT-1 homocysteine S-methyltransferase )
72 Proteins interacs with AT3G25900Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT4G16110 | Experimentaltwo hybrid | FSW = 0.0133
| Unknown | ARR2 (ARABIDOPSIS RESPONSE REGULATOR 2) TRANSCRIPTION FACTOR/ TWO-COMPONENT RESPONSE REGULATOR |
AT3G09630 | PredictedPhenotypic Suppression | FSW = 0.0373
| Unknown | 60S RIBOSOMAL PROTEIN L4/L1 (RPL4A) |
AT5G09590 | PredictedPhenotypic Suppression | FSW = 0.1293
| Unknown | MTHSC70-2 (MITOCHONDRIAL HSP70 2) ATP BINDING |
AT4G16660 | Predictedsynthetic growth defect | FSW = 0.2180
| Unknown | HEAT SHOCK PROTEIN 70 PUTATIVE / HSP70 PUTATIVE |
AT1G20260 | PredictedPhenotypic Suppression | FSW = 0.1433
| Unknown | HYDROGEN ION TRANSPORTING ATP SYNTHASE ROTATIONAL MECHANISM / HYDROLASE ACTING ON ACID ANHYDRIDES CATALYZING TRANSMEMBRANE MOVEMENT OF SUBSTANCES / PROTON-TRANSPORTING ATPASE ROTATIONAL MECHANISM |
AT5G07090 | PredictedPhenotypic Enhancement | FSW = 0.0741
| Unknown | 40S RIBOSOMAL PROTEIN S4 (RPS4B) |
AT5G57870 | PredictedSynthetic Lethality | FSW = 0.0552
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR 4F PUTATIVE / EIF-4F PUTATIVE |
AT3G22890 | PredictedPhenotypic Enhancement | FSW = 0.2228
| Unknown | APS1 (ATP SULFURYLASE 1) SULFATE ADENYLYLTRANSFERASE (ATP) |
AT5G09660 | Predictedsynthetic growth defectPhenotypic Enhancement | FSW = 0.2567
| Unknown | PMDH2 (PEROXISOMAL NAD-MALATE DEHYDROGENASE 2) MALATE DEHYDROGENASE |
AT1G21640 | PredictedPhenotypic Enhancement | FSW = 0.0234
| Unknown | NADK2 NAD+ KINASE/ CALMODULIN BINDING |
AT2G44050 | Predictedtwo hybrid | FSW = 0.0338
| Unknown | COS1 (COI1 SUPPRESSOR1) 67-DIMETHYL-8-RIBITYLLUMAZINE SYNTHASE |
AT5G06290 | PredictedPhenotypic Enhancement | FSW = 0.0391
| Unknown | 2-CYS PRX B (2-CYSTEINE PEROXIREDOXIN B) ANTIOXIDANT/ PEROXIREDOXIN |
AT1G48860 | PredictedSynthetic Lethality | FSW = 0.1207
| Unknown | 3-PHOSPHOSHIKIMATE 1-CARBOXYVINYLTRANSFERASE PUTATIVE / 5-ENOLPYRUVYLSHIKIMATE-3-PHOSPHATE PUTATIVE / EPSP SYNTHASE PUTATIVE |
AT3G54670 | PredictedPhenotypic Enhancement | FSW = 0.0708
| Unknown | TTN8 (TITAN8) ATP BINDING / TRANSPORTER |
AT5G03650 | Predictedsynthetic growth defect | FSW = 0.0242
| Unknown | SBE22 (STARCH BRANCHING ENZYME 22) 14-ALPHA-GLUCAN BRANCHING ENZYME |
AT5G20010 | PredictedSynthetic Lethality | FSW = 0.0128
| Unknown | RAN-1 GTP BINDING / GTPASE/ PROTEIN BINDING |
AT5G60540 | PredictedSynthetic Lethality | FSW = 0.2390
| Unknown | PDX2 (PYRIDOXINE BIOSYNTHESIS 2) GLUTAMINASE/ GLUTAMINYL-TRNA SYNTHASE (GLUTAMINE-HYDROLYZING)/ PROTEIN HETERODIMERIZATION |
AT1G04750 | PredictedSynthetic LethalitySynthetic LethalitySynthetic LethalityPhenotypic Enhancement | FSW = 0.2769
| Unknown | VAMP721 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 721) |
AT4G21680 | PredictedPhenotypic Enhancement | FSW = 0.0974
| Unknown | PROTON-DEPENDENT OLIGOPEPTIDE TRANSPORT (POT) FAMILY PROTEIN |
AT4G08800 | PredictedPhenotypic Enhancement | FSW = 0.0320
| Unknown | PROTEIN KINASE PUTATIVE |
AT3G22740 | PredictedGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.0465
| Unknown | HMT3 HOMOCYSTEINE S-METHYLTRANSFERASE |
AT3G13460 | Predictedsynthetic growth defectPhenotypic Enhancement | FSW = 0.1021
| Unknown | ECT2 PROTEIN BINDING |
AT4G28860 | PredictedPhenotypic Enhancementsynthetic growth defect | FSW = 0.0768
| Unknown | CKL4 (CASEIN KINASE I-LIKE 4) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT1G21700 | Predictedsynthetic growth defectSynthetic Lethality | FSW = 0.1615
| Unknown | ATSWI3C (SWITCH/SUCROSE NONFERMENTING 3C) DNA BINDING |
AT1G06960 | PredictedPhenotypic Enhancement | FSW = 0.0430
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN U2B PUTATIVE / SPLICEOSOMAL PROTEIN PUTATIVE |
AT1G56110 | PredictedPhenotypic Enhancement | FSW = 0.0451
| Unknown | NOP56 (ARABIDOPSIS HOMOLOG OF NUCLEOLAR PROTEIN NOP56) |
AT1G28460 | PredictedPhenotypic Suppression | FSW = 0.1155
| Unknown | AGL59 (AGAMOUS-LIKE 59) DNA BINDING / TRANSCRIPTION FACTOR |
AT4G25340 | PredictedSynthetic LethalitySynthetic LethalityPhenotypic Enhancement | FSW = 0.1638
| Unknown | IMMUNOPHILIN-RELATED / FKBP-TYPE PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED |
AT3G49920 | PredictedPhenotypic Suppression | FSW = 0.1048
| Unknown | VDAC5 (VOLTAGE DEPENDENT ANION CHANNEL 5) VOLTAGE-GATED ANION CHANNEL |
AT5G66020 | PredictedPhenotypic Enhancement | FSW = 0.0108
| Unknown | ATSAC1B (SUPPRESSOR OF ACTIN 1B) PHOSPHATIDYLINOSITOL-45-BISPHOSPHATE 5-PHOSPHATASE |
AT1G73190 | Predictedsynthetic growth defect | FSW = 0.0279
| Unknown | TIP31 WATER CHANNEL |
AT1G62800 | PredictedAffinity Capture-MStwo hybridPhenotypic SuppressionReconstituted ComplexCo-crystal StructureAffinity Capture-MS | FSW = 0.4039
| Unknown | ASP4 (ASPARTATE AMINOTRANSFERASE 4) CATALYTIC/ PYRIDOXAL PHOSPHATE BINDING / TRANSAMINASE/ TRANSFERASE TRANSFERRING NITROGENOUS GROUPS |
AT2G29540 | PredictedPhenotypic Enhancement | FSW = 0.0856
| Unknown | ATRPC14 (RNA POLYMERASE 14 KDA SUBUNIT) DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ PROTEIN DIMERIZATION |
AT1G15240 | PredictedSynthetic Lethality | FSW = 0.0651
| Unknown | PHOX (PX) DOMAIN-CONTAINING PROTEIN |
AT1G20693 | PredictedPhenotypic Enhancement | FSW = 0.2960
| Unknown | HMGB2 (HIGH MOBILITY GROUP B 2) DNA BINDING / CHROMATIN BINDING / STRUCTURAL CONSTITUENT OF CHROMATIN / TRANSCRIPTION FACTOR |
AT1G34760 | Predictedsynthetic growth defect | FSW = 0.0182
| Unknown | GRF11 (GENERAL REGULATORY FACTOR 11) ATPASE BINDING / AMINO ACID BINDING / PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING |
AT1G35350 | Predictedsynthetic growth defectSynthetic Lethality | FSW = 0.2617
| Unknown | LOCATED IN INTEGRAL TO MEMBRANE EXPRESSED IN 18 PLANT STRUCTURES EXPRESSED DURING 9 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S EXS C-TERMINAL (INTERPROIPR004342) SPX N-TERMINAL (INTERPROIPR004331) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS EXS FAMILY PROTEIN / ERD1/XPR1/SYG1 FAMILY PROTEIN (TAIRAT1G267301) HAS 734 BLAST HITS TO 697 PROTEINS IN 158 SPECIES ARCHAE - 0 BACTERIA - 21 METAZOA - 234 FUNGI - 245 PLANTS - 125 VIRUSES - 0 OTHER EUKARYOTES - 109 (SOURCE NCBI BLINK) |
AT1G44180 | Predictedsynthetic growth defect | FSW = 0.2178
| Unknown | AMINOACYLASE PUTATIVE / N-ACYL-L-AMINO-ACID AMIDOHYDROLASE PUTATIVE |
AT1G47830 | Predictedsynthetic growth defectPhenotypic Enhancement | FSW = 0.2306
| Unknown | CLATHRIN COAT ASSEMBLY PROTEIN PUTATIVE |
AT1G60680 | PredictedPhenotypic Enhancement | FSW = 0.1536
| Unknown | ALDO/KETO REDUCTASE FAMILY PROTEIN |
AT1G78770 | PredictedSynthetic LethalityPhenotypic Enhancement | FSW = 0.2130
| Unknown | CELL DIVISION CYCLE FAMILY PROTEIN |
AT2G03250 | Predictedsynthetic growth defect | FSW = 0.1783
| Unknown | EXS FAMILY PROTEIN / ERD1/XPR1/SYG1 FAMILY PROTEIN |
AT2G24960 | Predictedsynthetic growth defectPhenotypic Enhancement | FSW = 0.1770
| Unknown | UNKNOWN PROTEIN |
AT2G25280 | PredictedSynthetic Lethality | FSW = 0.1013
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S MEDIATOR OF ERBB2-DRIVEN CELL MOTILITY (MEMO) RELATED (INTERPROIPR002737) HAS 742 BLAST HITS TO 742 PROTEINS IN 323 SPECIES ARCHAE - 138 BACTERIA - 240 METAZOA - 132 FUNGI - 82 PLANTS - 26 VIRUSES - 0 OTHER EUKARYOTES - 124 (SOURCE NCBI BLINK) |
AT2G48100 | PredictedPhenotypic Enhancement | FSW = 0.1238
| Unknown | EXONUCLEASE FAMILY PROTEIN |
AT3G11230 | PredictedPhenotypic Enhancement | FSW = 0.2060
| Unknown | YIPPEE FAMILY PROTEIN |
AT3G21460 | PredictedSynthetic Lethality | FSW = 0.2455
| Unknown | ELECTRON CARRIER/ PROTEIN DISULFIDE OXIDOREDUCTASE |
AT3G22290 | Predictedsynthetic growth defectSynthetic LethalityPhenotypic Enhancement | FSW = 0.2416
| Unknown | UNKNOWN PROTEIN |
AT1G13580 | PredictedSynthetic Lethality | FSW = 0.1849
| Unknown | LAG13 (LAG1 LONGEVITY ASSURANCE HOMOLOG 3) |
AT1G21370 | PredictedPhenotypic Suppression | FSW = 0.1722
| Unknown | UNKNOWN PROTEIN |
AT1G66590 | Predictedsynthetic growth defect | FSW = 0.2479
| Unknown | COX19 FAMILY PROTEIN |
AT3G11240 | PredictedPhenotypic Enhancement | FSW = 0.1325
| Unknown | ATE2 (ARGININE-TRNA PROTEIN TRANSFERASE 2) ARGINYLTRANSFERASE |
AT3G24010 | PredictedAffinity Capture-MS | FSW = 0.2255
| Unknown | ING1 (INHIBITOR OF GROWTH 1) DNA BINDING / METHYLATED HISTONE RESIDUE BINDING |
AT3G47610 | PredictedSynthetic Lethality | FSW = 0.1650
| Unknown | TRANSCRIPTION REGULATOR/ ZINC ION BINDING |
AT4G21490 | Predictedsynthetic growth defectSynthetic Lethality | FSW = 0.2704
| Unknown | NDB3 NADH DEHYDROGENASE |
AT4G27130 | Predictedsynthetic growth defectSynthetic Lethality | FSW = 0.3312
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1 PUTATIVE |
AT4G29580 | Predictedsynthetic growth defect | FSW = 0.2317
| Unknown | CYTIDINE DEAMINASE PUTATIVE / CYTIDINE AMINOHYDROLASE PUTATIVE |
AT4G38250 | PredictedPhenotypic Suppression | FSW = 0.0928
| Unknown | AMINO ACID TRANSPORTER FAMILY PROTEIN |
AT5G16980 | Predictedsynthetic growth defectPhenotypic EnhancementSynthetic Lethality | FSW = 0.3437
| Unknown | NADP-DEPENDENT OXIDOREDUCTASE PUTATIVE |
AT5G45620 | Predictedsynthetic growth defectPhenotypic Enhancement | FSW = 0.2484
| Unknown | 26S PROTEASOME REGULATORY SUBUNIT PUTATIVE (RPN9) |
AT3G27440 | PredictedPhenotypic Enhancement | FSW = 0.1141
| Unknown | URACIL PHOSPHORIBOSYLTRANSFERASE PUTATIVE / UMP PYROPHOSPHORYLASE PUTATIVE / UPRTASE PUTATIVE |
AT4G04695 | PredictedPhenotypic Enhancement | FSW = 0.1062
| Unknown | CPK31 ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE |
AT4G16360 | Predictedsynthetic growth defect | FSW = 0.0247
| Unknown | AMP-ACTIVATED PROTEIN KINASE |
AT4G19645 | PredictedPhenotypic Enhancement | FSW = 0.0939
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN INTEGRAL TO MEMBRANE CONTAINS INTERPRO DOMAIN/S TRAM LAG1 AND CLN8 HOMOLOGY (INTERPROIPR006634) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G313002) HAS 401 BLAST HITS TO 401 PROTEINS IN 98 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 186 FUNGI - 102 PLANTS - 84 VIRUSES - 0 OTHER EUKARYOTES - 29 (SOURCE NCBI BLINK) |
AT4G33950 | Predictedsynthetic growth defect | FSW = 0.0200
| Unknown | OST1 (OPEN STOMATA 1) CALCIUM-DEPENDENT PROTEIN SERINE/THREONINE KINASE/ KINASE/ PROTEIN KINASE |
AT5G01430 | Predictedsynthetic growth defect | FSW = 0.1199
| Unknown | GOT1-LIKE FAMILY PROTEIN |
AT5G01770 | PredictedPhenotypic Enhancement | FSW = 0.2128
| Unknown | RAPTOR2 (RAPTOR2) BINDING / NUCLEOTIDE BINDING |
AT5G05070 | PredictedPhenotypic Enhancement | FSW = 0.0810
| Unknown | ZINC ION BINDING |
AT5G13860 | PredictedSynthetic LethalityPhenotypic Enhancement | FSW = 0.0761
| Unknown | ELC-LIKE (ELCH-LIKE) SMALL CONJUGATING PROTEIN LIGASE |
AT5G64760 | Predictedsynthetic growth defect | FSW = 0.1604
| Unknown | RPN5B (REGULATORY PARTICLE NON-ATPASE SUBUNIT 5B) |
AT5G67540 | PredictedPhenotypic Enhancement | FSW = 0.1328
| Unknown | GLYCOSYL HYDROLASE FAMILY PROTEIN 43 |
AT3G63250 | PredictedShared biological functionGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.0789
| Unknown | HMT2 (HOMOCYSTEINE METHYLTRANSFERASE 2) HOMOCYSTEINE S-METHYLTRANSFERASE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454