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AT2G29540 - ( ATRPC14 (RNA POLYMERASE 14 KDA SUBUNIT) DNA binding / DNA-directed RNA polymerase/ protein dimerization )

132 Proteins interacs with AT2G29540

Locus	Method	FSW	Cellular Compartment Classification (C3)	Description
AT3G21350	Experimental	FSW = 0.0313	Unknown	RNA POLYMERASE TRANSCRIPTIONAL REGULATION MEDIATOR-RELATED
AT3G09630	Predicted Phenotypic Enhancement	FSW = 0.0614	Unknown	60S RIBOSOMAL PROTEIN L4/L1 (RPL4A)
AT2G36160	Predicted two hybrid	FSW = 0.0167	Unknown	40S RIBOSOMAL PROTEIN S14 (RPS14A)
AT1G07660	Predicted Affinity Capture-MS	FSW = 0.0404	Unknown	HISTONE H4
AT4G16660	Predicted Phenotypic Enhancement	FSW = 0.1532	Unknown	HEAT SHOCK PROTEIN 70 PUTATIVE / HSP70 PUTATIVE
AT1G16240	Predicted Phenotypic Enhancement	FSW = 0.0374	Unknown	SYP51 (SYNTAXIN OF PLANTS 51) SNAP RECEPTOR
AT3G13080	Predicted Affinity Capture-MS	FSW = 0.0048	Unknown	ATMRP3 ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES / CHLOROPHYLL CATABOLITE TRANSPORTER/ GLUTATHIONE S-CONJUGATE-EXPORTING ATPASE
AT3G07100	Predicted two hybrid	FSW = 0.0163	Unknown	PROTEIN TRANSPORT PROTEIN SEC24 PUTATIVE
AT5G01410	Predicted Synthetic Lethality	FSW = 0.0259	Unknown	RSR4 (REDUCED SUGAR RESPONSE 4) PROTEIN HETERODIMERIZATION/ PROTEIN HOMODIMERIZATION
AT3G22890	Predicted Synthetic Lethality	FSW = 0.0955	Unknown	APS1 (ATP SULFURYLASE 1) SULFATE ADENYLYLTRANSFERASE (ATP)
AT5G59690	Predicted Affinity Capture-MS	FSW = 0.0138	Unknown	HISTONE H4
AT1G11870	Predicted Synthetic Lethality interologs mapping	FSW = 0.0950	Unknown	SRS (SERYL-TRNA SYNTHETASE) SERINE-TRNA LIGASE
AT5G14590	Predicted two hybrid	FSW = 0.0147	Unknown	ISOCITRATE DEHYDROGENASE PUTATIVE / NADP+ ISOCITRATE DEHYDROGENASE PUTATIVE
AT1G64190	Predicted Synthetic Lethality	FSW = 0.0152	Unknown	6-PHOSPHOGLUCONATE DEHYDROGENASE FAMILY PROTEIN
AT5G51820	Predicted Phenotypic Enhancement	FSW = 0.0811	Unknown	PGM (PHOSPHOGLUCOMUTASE) PHOSPHOGLUCOMUTASE
AT5G03650	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS	FSW = 0.1300	Unknown	SBE22 (STARCH BRANCHING ENZYME 22) 14-ALPHA-GLUCAN BRANCHING ENZYME
AT5G53480	Predicted Synthetic Lethality	FSW = 0.0097	Unknown	IMPORTIN BETA-2 PUTATIVE
AT1G10070	Predicted Phenotypic Enhancement Synthetic Lethality	FSW = 0.0317	Unknown	ATBCAT-2 (ARABIDOPSIS THALIANA BRANCHED-CHAIN AMINO ACID TRANSAMINASE 2) BRANCHED-CHAIN-AMINO-ACID TRANSAMINASE/ CATALYTIC
AT2G43030	Predicted Affinity Capture-MS	FSW = 0.0714	Unknown	RIBOSOMAL PROTEIN L3 FAMILY PROTEIN
AT1G45145	Predicted Synthetic Rescue	FSW = 0.0785	Unknown	ATTRX5 OXIDOREDUCTASE ACTING ON SULFUR GROUP OF DONORS DISULFIDE AS ACCEPTOR
AT5G60540	Predicted Phenotypic Enhancement	FSW = 0.1319	Unknown	PDX2 (PYRIDOXINE BIOSYNTHESIS 2) GLUTAMINASE/ GLUTAMINYL-TRNA SYNTHASE (GLUTAMINE-HYDROLYZING)/ PROTEIN HETERODIMERIZATION
AT3G47370	Predicted synthetic growth defect Affinity Capture-MS	FSW = 0.0369	Unknown	40S RIBOSOMAL PROTEIN S20 (RPS20B)
AT1G66250	Predicted Affinity Capture-MS	FSW = 0.0198	Unknown	GLYCOSYL HYDROLASE FAMILY 17 PROTEIN
AT4G36490	Predicted synthetic growth defect	FSW = 0.1493	Unknown	SFH12 (SEC14-LIKE 12) PHOSPHATIDYLINOSITOL TRANSPORTER/ TRANSPORTER
AT2G32670	Predicted Affinity Capture-Western Affinity Capture-Western Affinity Capture-Western Affinity Capture-Western Affinity Capture-Western co-fractionation Co-fractionation	FSW = 0.2026	Unknown	ATVAMP725
AT1G15520	Predicted Synthetic Rescue	FSW = 0.0604	Unknown	PDR12 (PLEIOTROPIC DRUG RESISTANCE 12) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES
AT2G44690	Predicted Synthetic Rescue	FSW = 0.0266	Unknown	ARAC9 GTP BINDING
AT4G24400	Predicted Affinity Capture-MS	FSW = 0.0286	Unknown	CIPK8 (CBL-INTERACTING PROTEIN KINASE 8) KINASE/ PROTEIN KINASE
AT1G65930	Predicted two hybrid	FSW = 0.0241	Unknown	ISOCITRATE DEHYDROGENASE PUTATIVE / NADP+ ISOCITRATE DEHYDROGENASE PUTATIVE
AT2G37790	Predicted Synthetic Lethality	FSW = 0.1135	Unknown	ALDO/KETO REDUCTASE FAMILY PROTEIN
AT4G18800	Predicted Synthetic Lethality	FSW = 0.1048	Unknown	ATRABA1D (ARABIDOPSIS RAB GTPASE HOMOLOG A1D) GTP BINDING
AT3G04460	Predicted Synthetic Lethality	FSW = 0.0747	Unknown	PEX12 PROTEIN BINDING / ZINC ION BINDING
AT4G07950	Predicted Affinity Capture-MS	FSW = 0.0534	Unknown	DNA-DIRECTED RNA POLYMERASE III FAMILY PROTEIN
AT3G60180	Predicted Synthetic Lethality	FSW = 0.0952	Unknown	URIDYLATE KINASE PUTATIVE / URIDINE MONOPHOSPHATE KINASE PUTATIVE / UMP KINASE PUTATIVE
AT4G28860	Predicted Affinity Capture-Western	FSW = 0.0770	Unknown	CKL4 (CASEIN KINASE I-LIKE 4) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
AT5G57015	Predicted Affinity Capture-MS interaction prediction	FSW = 0.0072	Unknown	CKL12 (CASEIN KINASE I-LIKE 12) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
AT1G03930	Predicted Affinity Capture-MS	FSW = 0.0097	Unknown	ADK1 (DUAL SPECIFICITY KINASE 1) KINASE/ PROTEIN SERINE/THREONINE/TYROSINE KINASE
AT3G57660	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS interaction prediction Enriched domain pair Co-expression	FSW = 0.1185	Unknown	NRPA1 DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ ZINC ION BINDING
AT3G25940	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS interaction prediction Co-expression	FSW = 0.1323	Unknown	TRANSCRIPTION FACTOR S-II (TFIIS) DOMAIN-CONTAINING PROTEIN
AT1G19120	Predicted two hybrid	FSW = 0.0053	Unknown	SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE
AT3G14080	Predicted two hybrid	FSW = 0.0085	Unknown	SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE
AT1G76300	Predicted Phenotypic Enhancement	FSW = 0.0734	Unknown	SMD3 (SNRNP CORE PROTEIN SMD3)
AT3G13940	Predicted Affinity Capture-MS Affinity Capture-MS Co-expression	FSW = 0.0828	Unknown	DNA BINDING / DNA-DIRECTED RNA POLYMERASE
AT3G62310	Predicted Affinity Capture-MS	FSW = 0.0095	Unknown	RNA HELICASE PUTATIVE
AT1G60850	Predicted two hybrid two hybrid two hybrid	FSW = 0.0275	Unknown	ATRPAC42 DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ PROTEIN DIMERIZATION
AT3G13445	Predicted Phenotypic Enhancement	FSW = 0.0722	Unknown	TBP1 (TATA BINDING PROTEIN 1) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR/ BINDING
AT2G15430	Predicted two hybrid interaction prediction Enriched domain pair	FSW = 0.0170	Unknown	NRPB3 DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ PROTEIN DIMERIZATION
AT2G38880	Predicted Affinity Capture-MS Synthetic Lethality	FSW = 0.0890	Unknown	NF-YB1 (NUCLEAR FACTOR Y SUBUNIT B1) TRANSCRIPTION FACTOR
AT5G41020	Predicted Affinity Capture-MS	FSW = 0.0165	Unknown	MYB FAMILY TRANSCRIPTION FACTOR
AT4G25340	Predicted Synthetic Lethality	FSW = 0.1568	Unknown	IMMUNOPHILIN-RELATED / FKBP-TYPE PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED
AT5G47630	Predicted Synthetic Lethality Synthetic Lethality Phenotypic Enhancement Phenotypic Suppression	FSW = 0.1094	Unknown	MTACP3 (MITOCHONDRIAL ACYL CARRIER PROTEIN 3) ACYL CARRIER/ COFACTOR BINDING
AT3G18480	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-Western Affinity Capture-Western Affinity Capture-Western Affinity Capture-MS Affinity Capture-MS Co-purification Co-purification Affinity Capture-Western Affinity Capture-Western Affinity Capture-MS Affinity Capture-MS Co-purification Phenotypic Suppression	FSW = 0.3217	Unknown	ATCASP (ARABIDOPSIS THALIANA CCAAT-DISPLACEMENT PROTEIN ALTERNATIVELY SPLICED PRODUCT)
AT4G33710	Predicted Affinity Capture-MS Phenotypic Enhancement	FSW = 0.1043	Unknown	PATHOGENESIS-RELATED PROTEIN PUTATIVE
AT2G19980	Predicted Affinity Capture-MS	FSW = 0.1581	Unknown	ALLERGEN V5/TPX-1-RELATED FAMILY PROTEIN
AT5G47720	Predicted Phenotypic Enhancement	FSW = 0.0146	Unknown	ACETYL-COA C-ACYLTRANSFERASE PUTATIVE / 3-KETOACYL-COA THIOLASE PUTATIVE
AT4G13090	Predicted Synthetic Rescue	FSW = 0.0878	Unknown	XYLOGLUCANXYLOGLUCOSYL TRANSFERASE PUTATIVE / XYLOGLUCAN ENDOTRANSGLYCOSYLASE PUTATIVE / ENDO-XYLOGLUCAN TRANSFERASE PUTATIVE
AT1G77990	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.1319	Unknown	AST56 SULFATE TRANSMEMBRANE TRANSPORTER
AT1G52300	Predicted Synthetic Lethality	FSW = 0.0987	Unknown	60S RIBOSOMAL PROTEIN L37 (RPL37B)
AT3G52580	Predicted two hybrid	FSW = 0.0202	Unknown	40S RIBOSOMAL PROTEIN S14 (RPS14C)
AT3G02560	Predicted Synthetic Rescue	FSW = 0.0296	Unknown	40S RIBOSOMAL PROTEIN S7 (RPS7B)
AT5G41480	Predicted Affinity Capture-MS	FSW = 0.0342	Unknown	GLA1 (GLOBULAR ARREST1) DIHYDROFOLATE SYNTHASE
AT1G61700	Predicted Affinity Capture-MS interologs mapping Affinity Capture-MS	FSW = 0.1351	Unknown	DNA-DIRECTED RNA POLYMERASE II PUTATIVE (RPB10)
AT2G15400	Predicted two hybrid Enriched domain pair	FSW = 0.0466	Unknown	NRPE3B DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ PROTEIN DIMERIZATION
AT4G17190	Predicted Phenotypic Enhancement	FSW = 0.0916	Unknown	FPS2 (FARNESYL DIPHOSPHATE SYNTHASE 2) DIMETHYLALLYLTRANSTRANSFERASE/ GERANYLTRANSTRANSFERASE
AT3G60360	Predicted Synthetic Lethality Synthetic Lethality	FSW = 0.1245	Unknown	EDA14 (EMBRYO SAC DEVELOPMENT ARREST 14)
AT4G39200	Predicted biochemical	FSW = 0.1987	Unknown	40S RIBOSOMAL PROTEIN S25 (RPS25E)
AT1G62800	Predicted Phenotypic Enhancement	FSW = 0.0943	Unknown	ASP4 (ASPARTATE AMINOTRANSFERASE 4) CATALYTIC/ PYRIDOXAL PHOSPHATE BINDING / TRANSAMINASE/ TRANSFERASE TRANSFERRING NITROGENOUS GROUPS
AT3G04240	Predicted two hybrid	FSW = 0.0056	Unknown	SEC (SECRET AGENT) TRANSFERASE TRANSFERRING GLYCOSYL GROUPS
AT3G55070	Predicted two hybrid	FSW = 0.0070	Unknown	FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CHLOROPLAST EXPRESSED IN 24 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S CTLH C-TERMINAL TO LISH MOTIF (INTERPROIPR006595) LISH DIMERISATION MOTIF (INTERPROIPR006594) CT11-RANBPM (INTERPROIPR013144) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS PROTEIN BINDING / ZINC ION BINDING (TAIRAT4G378801) HAS 669 BLAST HITS TO 649 PROTEINS IN 147 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 334 FUNGI - 200 PLANTS - 87 VIRUSES - 0 OTHER EUKARYOTES - 48 (SOURCE NCBI BLINK)
AT1G34770	Predicted two hybrid	FSW = 0.0102	Unknown	MAGE-8 ANTIGEN-RELATED
AT1G60620	Predicted two hybrid two hybrid two hybrid interologs mapping Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS two hybrid two hybrid interologs mapping interaction prediction Enriched domain pair Co-expression	FSW = 0.0934	Unknown	ATRPAC43 DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ PROTEIN DIMERIZATION
AT1G20693	Predicted Synthetic Lethality Synthetic Lethality Synthetic Lethality Phenotypic Enhancement	FSW = 0.1391	Unknown	HMGB2 (HIGH MOBILITY GROUP B 2) DNA BINDING / CHROMATIN BINDING / STRUCTURAL CONSTITUENT OF CHROMATIN / TRANSCRIPTION FACTOR
AT1G29940	Predicted interaction prediction two hybrid Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS interologs mapping Enriched domain pair Co-expression	FSW = 0.0916	Unknown	NRPA2 DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ RIBONUCLEOSIDE BINDING
AT1G29970	Predicted Synthetic Lethality Phenotypic Enhancement	FSW = 0.1100	Unknown	RPL18AA (60S RIBOSOMAL PROTEIN L18A-1)
AT1G31170	Predicted Affinity Capture-MS	FSW = 0.0682	Unknown	SRX (SULFIREDOXIN) DNA BINDING / OXIDOREDUCTASE ACTING ON SULFUR GROUP OF DONORS
AT1G54250	Predicted Affinity Capture-MS	FSW = 0.1667	Unknown	NRPB8A DNA-DIRECTED RNA POLYMERASE
AT1G54940	Predicted Phenotypic Enhancement	FSW = 0.0189	Unknown	PGSIP4 (PLANT GLYCOGENIN-LIKE STARCH INITIATION PROTEIN 4) TRANSFERASE TRANSFERRING GLYCOSYL GROUPS
AT1G55300	Predicted Synthetic Lethality Phenotypic Enhancement	FSW = 0.1571	Unknown	TAF7 (TBP-ASSOCIATED FACTOR 7) GENERAL RNA POLYMERASE II TRANSCRIPTION FACTOR
AT1G66740	Predicted Affinity Capture-MS Phenotypic Enhancement Co-expression	FSW = 0.0246	Unknown	SGA2
AT2G03130	Predicted Synthetic Lethality Phenotypic Enhancement	FSW = 0.1307	Unknown	RIBOSOMAL PROTEIN L12 FAMILY PROTEIN
AT2G15910	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS	FSW = 0.1317	Unknown	CSL ZINC FINGER DOMAIN-CONTAINING PROTEIN
AT1G05660	Predicted Affinity Capture-MS	FSW = 0.0148	Unknown	POLYGALACTURONASE PUTATIVE / PECTINASE PUTATIVE
AT1G06790	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS	FSW = 0.0497	Unknown	RNA POLYMERASE RPB7 N-TERMINAL DOMAIN-CONTAINING PROTEIN
AT1G26320	Predicted Affinity Capture-MS	FSW = 0.1193	Unknown	NADP-DEPENDENT OXIDOREDUCTASE PUTATIVE
AT1G27320	Predicted Affinity Capture-MS	FSW = 0.0386	Unknown	AHK3 (ARABIDOPSIS HISTIDINE KINASE 3) CYTOKININ RECEPTOR/ OSMOSENSOR/ PROTEIN HISTIDINE KINASE
AT1G29230	Predicted interologs mapping Phenotypic Enhancement	FSW = 0.0180	Unknown	CIPK18 (CBL-INTERACTING PROTEIN KINASE 18) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
AT1G60730	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.0593	Unknown	ALDO/KETO REDUCTASE FAMILY PROTEIN
AT1G72680	Predicted Affinity Capture-MS	FSW = 0.0722	Unknown	CINNAMYL-ALCOHOL DEHYDROGENASE PUTATIVE
AT1G78770	Predicted Synthetic Lethality Synthetic Lethality	FSW = 0.0946	Unknown	CELL DIVISION CYCLE FAMILY PROTEIN
AT2G20290	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.0858	Unknown	XIG MOTOR/ PROTEIN BINDING
AT2G30800	Predicted Affinity Capture-MS	FSW = 0.1374	Unknown	HVT1 (HELICASE IN VASCULAR TISSUE AND TAPETUM) ATP BINDING / HELICASE/ NUCLEIC ACID BINDING
AT2G31020	Predicted Affinity Capture-MS Synthetic Rescue	FSW = 0.0597	Unknown	ORP1A (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 1A) OXYSTEROL BINDING
AT2G31900	Predicted Affinity Capture-MS	FSW = 0.1014	Unknown	XIF MOTOR
AT2G47090	Predicted Synthetic Lethality	FSW = 0.0585	Unknown	NUCLEIC ACID BINDING / PROTEIN BINDING / ZINC ION BINDING
AT3G03180	Predicted Synthetic Lethality	FSW = 0.0110	Unknown	GOT1-LIKE FAMILY PROTEIN
AT3G06483	Predicted Synthetic Lethality Synthetic Lethality Phenotypic Enhancement	FSW = 0.1024	Unknown	PDK (PYRUVATE DEHYDROGENASE KINASE) ATP BINDING / HISTIDINE PHOSPHOTRANSFER KINASE/ PYRUVATE DEHYDROGENASE (ACETYL-TRANSFERRING) KINASE
AT3G09800	Predicted Phenotypic Enhancement	FSW = 0.0161	Unknown	PROTEIN BINDING
AT3G11230	Predicted Synthetic Lethality	FSW = 0.1937	Unknown	YIPPEE FAMILY PROTEIN
AT3G12200	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.1582	Unknown	ATNEK7 (NIMA-RELATED KINASE7) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE
AT3G18850	Predicted Affinity Capture-MS	FSW = 0.1084	Unknown	LPAT5 ACYLTRANSFERASE
AT3G21460	Predicted Synthetic Lethality	FSW = 0.1505	Unknown	ELECTRON CARRIER/ PROTEIN DISULFIDE OXIDOREDUCTASE
AT3G22320	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Co-expression	FSW = 0.1577	Unknown	NRPB5 DNA BINDING / DNA-DIRECTED RNA POLYMERASE
AT3G50780	Predicted Affinity Capture-MS Phenotypic Enhancement	FSW = 0.1577	Unknown	INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS PRLI-INTERACTING FACTOR-RELATED (TAIRAT1G638501) HAS 173 BLAST HITS TO 173 PROTEINS IN 14 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 8 FUNGI - 0 PLANTS - 164 VIRUSES - 0 OTHER EUKARYOTES - 1 (SOURCE NCBI BLINK)
AT3G62760	Predicted Colocalization interologs mapping	FSW = 0.0981	Unknown	ATGSTF13 GLUTATHIONE TRANSFERASE
AT3G62770	Predicted Synthetic Lethality	FSW = 0.0290	Unknown	ATATG18A
AT3G63150	Predicted Affinity Capture-Western synthetic growth defect	FSW = 0.0120	Unknown	MIRO2 (MIRO-RELATED GTP-ASE 2) GTPASE/ CALCIUM ION BINDING
AT4G04700	Predicted interologs mapping Affinity Capture-MS Synthetic Lethality interologs mapping interologs mapping Reconstituted Complex Reconstituted Complex Reconstituted Complex Affinity Capture-Western Affinity Capture-Western Affinity Capture-Western Affinity Capture-MS Affinity Capture-MS Colocalization Affinity Capture-Western Affinity Capture-MS Affinity Capture-Western Colocalization Co-purification interologs mapping Reconstituted Complex Synthetic Lethality Synthetic Rescue	FSW = 0.1381	Unknown	CPK27 ATP BINDING / CALCIUM ION BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE
AT4G16970	Predicted Affinity Capture-MS	FSW = 0.0021	Unknown	ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
AT4G25960	Predicted interologs mapping interologs mapping Phenotypic Enhancement	FSW = 0.0074	Unknown	PGP2 (P-GLYCOPROTEIN 2) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES
AT5G45140	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS interaction prediction Enriched domain pair Co-expression	FSW = 0.0864	Unknown	NRPC2 DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ RIBONUCLEOSIDE BINDING
AT5G48630	Predicted Synthetic Lethality	FSW = 0.0269	Unknown	CYCLIN FAMILY PROTEIN
AT5G54800	Predicted Synthetic Rescue	FSW = 0.0187	Unknown	GPT1 ANTIPORTER/ GLUCOSE-6-PHOSPHATE TRANSMEMBRANE TRANSPORTER
AT5G60040	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS interaction prediction Enriched domain pair Co-expression	FSW = 0.0883	Unknown	NRPC1 DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ RIBONUCLEOSIDE BINDING / ZINC ION BINDING
AT5G67540	Predicted Affinity Capture-MS Affinity Capture-Western Affinity Capture-Western Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-Western co-fractionation Co-fractionation Phenotypic Suppression	FSW = 0.2401	Unknown	GLYCOSYL HYDROLASE FAMILY PROTEIN 43
AT2G33560	Predicted interologs mapping	FSW = 0.0603	Unknown	SPINDLE CHECKPOINT PROTEIN-RELATED
AT2G34750	Predicted Phenotypic Enhancement	FSW = 0.1288	Unknown	RNA POLYMERASE I SPECIFIC TRANSCRIPTION INITIATION FACTOR RRN3 FAMILY PROTEIN
AT2G42005	Predicted Phenotypic Enhancement	FSW = 0.0222	Unknown	AMINO ACID TRANSPORTER FAMILY PROTEIN
AT3G01100	Predicted Phenotypic Enhancement	FSW = 0.0137	Unknown	HYP1 (HYPOTHETICAL PROTEIN 1)
AT3G09640	Predicted Phenotypic Enhancement	FSW = 0.1124	Unknown	APX2 (ASCORBATE PEROXIDASE 2) L-ASCORBATE PEROXIDASE
AT3G12670	Predicted Synthetic Rescue	FSW = 0.0241	Unknown	EMB2742 (EMBRYO DEFECTIVE 2742) CTP SYNTHASE/ CATALYTIC
AT3G25900	Predicted Phenotypic Enhancement	FSW = 0.0856	Unknown	HMT-1 HOMOCYSTEINE S-METHYLTRANSFERASE
AT3G59540	Predicted Phenotypic Enhancement	FSW = 0.0822	Unknown	60S RIBOSOMAL PROTEIN L38 (RPL38B)
AT4G00800	Predicted Phenotypic Enhancement	FSW = 0.0929	Unknown	BINDING / PROTEIN BINDING / ZINC ION BINDING
AT4G15370	Predicted Synthetic Rescue	FSW = 0.0302	Unknown	BARS1 (BARUOL SYNTHASE 1) BARUOL SYNTHASE/ CATALYTIC
AT4G19645	Predicted Phenotypic Enhancement	FSW = 0.1112	Unknown	FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN INTEGRAL TO MEMBRANE CONTAINS INTERPRO DOMAIN/S TRAM LAG1 AND CLN8 HOMOLOGY (INTERPROIPR006634) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G313002) HAS 401 BLAST HITS TO 401 PROTEINS IN 98 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 186 FUNGI - 102 PLANTS - 84 VIRUSES - 0 OTHER EUKARYOTES - 29 (SOURCE NCBI BLINK)
AT4G21490	Predicted Phenotypic Suppression	FSW = 0.0567	Unknown	NDB3 NADH DEHYDROGENASE
AT4G26230	Predicted Affinity Capture-MS	FSW = 0.0162	Unknown	60S RIBOSOMAL PROTEIN L31 (RPL31B)
AT5G04800	Predicted Phenotypic Enhancement	FSW = 0.0786	Unknown	40S RIBOSOMAL PROTEIN S17 (RPS17D)
AT5G51940	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.1145	Unknown	NRPB6A DNA BINDING / DNA-DIRECTED RNA POLYMERASE
AT5G59490	Predicted Affinity Capture-MS	FSW = 0.0080	Unknown	HALOACID DEHALOGENASE-LIKE HYDROLASE FAMILY PROTEIN
AT2G04630	Predicted Affinity Capture-MS Co-expression	FSW = 0.1382	Unknown	NRPB6B DNA BINDING / DNA-DIRECTED RNA POLYMERASE
AT1G11475	Predicted Affinity Capture-MS interologs mapping Enriched domain pair	FSW = 0.1294	Unknown	NRPB10 DNA BINDING / DNA-DIRECTED RNA POLYMERASE

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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from

Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment

Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment

Class C: Same as Class A but the PPI is predicted

Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB

Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454

Welcome to AtPIN

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AT2G29540 - ( ATRPC14 (RNA POLYMERASE 14 KDA SUBUNIT) DNA binding / DNA-directed RNA polymerase/ protein dimerization )

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