Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT4G16970 - ( ATP binding / kinase/ protein kinase/ protein serine/threonine kinase )
54 Proteins interacs with AT4G16970Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G16640 | PredictedSynthetic Lethality | FSW = 0.0165
| Unknown | TCTP (TRANSLATIONALLY CONTROLLED TUMOR PROTEIN) |
AT2G01690 | PredictedAffinity Capture-MS | FSW = 0.0167
| Unknown | BINDING |
AT5G43530 | PredictedPhenotypic Enhancement | FSW = 0.0940
| Unknown | SNF2 DOMAIN-CONTAINING PROTEIN / HELICASE DOMAIN-CONTAINING PROTEIN / RING FINGER DOMAIN-CONTAINING PROTEIN |
AT1G75330 | Predictedtwo hybrid | FSW = 0.0351
| Unknown | OTC (ORNITHINE CARBAMOYLTRANSFERASE) AMINO ACID BINDING / CARBOXYL- OR CARBAMOYLTRANSFERASE/ ORNITHINE CARBAMOYLTRANSFERASE |
AT3G48750 | Predictedinterologs mappingbiochemicalSynthetic Lethalityinterologs mapping | FSW = 0.0176
| Unknown | CDC2 (CELL DIVISION CONTROL 2) CYCLIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN BINDING / PROTEIN KINASE |
AT3G11510 | PredictedSynthetic Lethality | FSW = 0.0035
| Unknown | 40S RIBOSOMAL PROTEIN S14 (RPS14B) |
AT1G62740 | PredictedAffinity Capture-MSSynthetic Lethality | FSW = 0.0293
| Unknown | STRESS-INDUCIBLE PROTEIN PUTATIVE |
AT1G56330 | PredictedAffinity Capture-MS | FSW = 0.0117
| Unknown | ATSAR1B (SECRETION-ASSOCIATED RAS 1 B) GTP BINDING |
AT2G44680 | PredictedSynthetic Lethality | FSW = 0.0087
| Unknown | CKB4 (CASEIN KINASE II BETA SUBUNIT 4) PROTEIN SERINE/THREONINE KINASE |
AT1G44900 | Predictedbiochemicalbiochemicalbiochemicalsynthetic growth defectsynthetic growth defecttwo hybridbiochemicalbiochemicalbiochemicaltwo hybridtwo hybridin vitroin vitrobiochemicalsynthetic growth defectAffinity Capture-Western | FSW = 0.1894
| Unknown | ATP BINDING / DNA BINDING / DNA-DEPENDENT ATPASE |
AT3G44530 | PredictedSynthetic Lethality | FSW = 0.0411
| Unknown | HIRA (ARABIDOPSIS HOMOLOG OF HISTONE CHAPERONE HIRA) NUCLEOTIDE BINDING / PROTEIN BINDING |
AT4G02060 | Predictedsynthetic growth defecttwo hybridbiochemicalsynthetic growth defect | FSW = 0.1560
| Unknown | PRL (PROLIFERA) ATP BINDING / DNA BINDING / DNA-DEPENDENT ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING |
AT3G13920 | PredictedSynthetic Lethality | FSW = 0.0271
| Unknown | EIF4A1 (EUKARYOTIC TRANSLATION INITIATION FACTOR 4A1) ATP-DEPENDENT HELICASE/ TRANSLATION INITIATION FACTOR |
AT1G07370 | PredictedPhenotypic Enhancement | FSW = 0.0905
| Unknown | PCNA1 (PROLIFERATING CELLULAR NUCLEAR ANTIGEN) DNA BINDING / DNA POLYMERASE PROCESSIVITY FACTOR/ PROTEIN BINDING |
AT5G05490 | Predictedsynthetic growth defectSynthetic Lethality | FSW = 0.0379
| Unknown | SYN1 (SYNAPTIC 1) |
AT5G66130 | PredictedSynthetic Lethality | FSW = 0.1248
| Unknown | ATRAD17 (ARABIDOPSIS THALIANA RADIATION SENSITIVE) |
AT3G25980 | PredictedSynthetic Lethality | FSW = 0.0551
| Unknown | MITOTIC SPINDLE CHECKPOINT PROTEIN PUTATIVE (MAD2) |
AT5G40820 | Predictedsynthetic growth defectSynthetic Lethality | FSW = 0.0881
| Unknown | ATRAD3 BINDING / INOSITOL OR PHOSPHATIDYLINOSITOL KINASE/ PHOSPHOTRANSFERASE ALCOHOL GROUP AS ACCEPTOR / PROTEIN SERINE/THREONINE KINASE |
AT1G26840 | Predictedtwo hybrid | FSW = 0.1505
| Unknown | ORC6 (ORIGIN RECOGNITION COMPLEX PROTEIN 6) DNA BINDING |
AT3G12530 | PredictedColocalization | FSW = 0.0174
| Unknown | PSF2 |
AT2G37560 | PredictedSynthetic Lethalitytwo hybridSynthetic Lethality | FSW = 0.1911
| Unknown | ORC2 (ORIGIN RECOGNITION COMPLEX SECOND LARGEST SUBUNIT 2) DNA REPLICATION ORIGIN BINDING / PROTEIN BINDING |
AT2G29540 | PredictedAffinity Capture-MS | FSW = 0.0021
| Unknown | ATRPC14 (RNA POLYMERASE 14 KDA SUBUNIT) DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ PROTEIN DIMERIZATION |
AT5G20620 | Predictedtwo hybrid | FSW = 0.0452
| Unknown | UBQ4 PROTEIN BINDING |
AT2G07690 | PredictedSynthetic RescueSynthetic Rescuetwo hybridbiochemicalSynthetic Rescue | FSW = 0.1592
| Unknown | MINICHROMOSOME MAINTENANCE FAMILY PROTEIN / MCM FAMILY PROTEIN |
AT2G16440 | Predictedbiochemicaltwo hybridbiochemicalReconstituted Complexsynthetic growth defect | FSW = 0.2149
| Unknown | DNA REPLICATION LICENSING FACTOR PUTATIVE |
AT4G12620 | Predictedtwo hybrid | FSW = 0.1441
| Unknown | ORC1B (ORIGIN OF REPLICATION COMPLEX 1B) DNA BINDING / DOUBLE-STRANDED METHYLATED DNA BINDING / PROTEIN BINDING |
AT5G46280 | Predictedbiochemicalin vitrobiochemicalsynthetic growth defect | FSW = 0.1009
| Unknown | DNA REPLICATION LICENSING FACTOR PUTATIVE |
AT1G04730 | PredictedSynthetic Lethalityinterologs mapping | FSW = 0.0799
| Unknown | AAA-TYPE ATPASE FAMILY PROTEIN |
AT1G10930 | PredictedSynthetic Lethality | FSW = 0.0716
| Unknown | RECQ4A ATP BINDING / ATP-DEPENDENT HELICASE/ HELICASE/ NUCLEIC ACID BINDING |
AT1G49980 | PredictedPhenotypic Enhancement | FSW = 0.0505
| Unknown | DNA-DIRECTED DNA POLYMERASE/ DAMAGED DNA BINDING |
AT1G54320 | Predictedtwo hybrid | FSW = 0.0388
| Unknown | LEM3 (LIGAND-EFFECT MODULATOR 3) FAMILY PROTEIN / CDC50 FAMILY PROTEIN |
AT1G67500 | PredictedPhenotypic Enhancement | FSW = 0.0689
| Unknown | ATREV3 (ARABIDOPSIS THALIANA RECOVERY PROTEIN 3) DNA BINDING / DNA-DIRECTED DNA POLYMERASE |
AT1G78580 | PredictedAffinity Capture-MS | FSW = 0.0329
| Unknown | ATTPS1 (TREHALOSE-6-PHOSPHATE SYNTHASE) ALPHAALPHA-TREHALOSE-PHOSPHATE SYNTHASE (UDP-FORMING)/ TRANSFERASE TRANSFERRING GLYCOSYL GROUPS |
AT1G79990 | PredictedAffinity Capture-MS | FSW = 0.0262
| Unknown | LOCATED IN ENDOMEMBRANE SYSTEM COPI VESICLE COAT GOLGI MEMBRANE EXPRESSED IN 25 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S SYS1 HOMOLOGUE (INTERPROIPR016973) HAS 55556 BLAST HITS TO 24059 PROTEINS IN 620 SPECIES ARCHAE - 38 BACTERIA - 5697 METAZOA - 25539 FUNGI - 10898 PLANTS - 5309 VIRUSES - 0 OTHER EUKARYOTES - 8075 (SOURCE NCBI BLINK) |
AT2G22530 | PredictedSynthetic Lethality | FSW = 0.0119
| Unknown | CATALYTIC/ TRANSFERASE |
AT2G44580 | PredictedSynthetic Lethality | FSW = 0.0651
| Unknown | PROTEIN BINDING / ZINC ION BINDING |
AT3G06460 | PredictedSynthetic Lethality | FSW = 0.0077
| Unknown | GNS1/SUR4 MEMBRANE FAMILY PROTEIN |
AT3G46320 | PredictedSynthetic Rescue | FSW = 0.0189
| Unknown | HISTONE H4 |
AT3G58180 | PredictedSynthetic Lethality | FSW = 0.0374
| Unknown | PBS LYASE HEAT-LIKE REPEAT-CONTAINING PROTEIN |
AT4G00660 | Predictedtwo hybrid | FSW = 0.0422
| Unknown | DEAD/DEAH BOX HELICASE PUTATIVE |
AT4G05320 | PredictedAffinity Capture-MS | FSW = 0.0072
| Unknown | UBQ10 (POLYUBIQUITIN 10) PROTEIN BINDING |
AT1G54140 | PredictedSynthetic Lethality | FSW = 0.0089
| Unknown | TAFII21 (TATA BINDING PROTEIN ASSOCIATED FACTOR 21KDA SUBUNIT) DNA BINDING / TRANSCRIPTION INITIATION FACTOR |
AT5G01320 | PredictedAffinity Capture-MS | FSW = 0.0108
| Unknown | PYRUVATE DECARBOXYLASE PUTATIVE |
AT5G10070 | Predictedtwo hybrid | FSW = 0.0161
| Unknown | RNASE L INHIBITOR PROTEIN-RELATED |
AT5G10390 | PredictedSynthetic Rescue | FSW = 0.0216
| Unknown | HISTONE H3 |
AT5G27990 | PredictedSynthetic Lethality | FSW = 0.0189
| Unknown | UNKNOWN PROTEIN |
AT5G42000 | PredictedSynthetic Lethality | FSW = 0.0086
| Unknown | ORMDL FAMILY PROTEIN |
AT5G44635 | Predictedbiochemicalbiochemicalsynthetic growth defect | FSW = 0.0977
| Unknown | MINICHROMOSOME MAINTENANCE FAMILY PROTEIN / MCM FAMILY PROTEIN |
AT5G61330 | PredictedAffinity Capture-MS | FSW = 0.0061
| Unknown | RRNA PROCESSING PROTEIN-RELATED |
AT5G63920 | PredictedSynthetic Lethality | FSW = 0.0962
| Unknown | DNA TOPOISOMERASE III ALPHA PUTATIVE |
AT5G67100 | Predictedsynthetic growth defect | FSW = 0.0734
| Unknown | ICU2 (INCURVATA2) DNA-DIRECTED DNA POLYMERASE |
AT3G25100 | PredictedColocalizationColocalizationsynthetic growth defect | FSW = 0.2489
| Unknown | CDC45 (CELL DIVISION CYCLE 45) |
AT3G42660 | PredictedSynthetic LethalityColocalization | FSW = 0.0835
| Unknown | NUCLEOTIDE BINDING |
AT5G44740 | Predictedsynthetic growth defect | FSW = 0.0393
| Unknown | POLH (Y-FAMILT DNA POLYMERASE H) DNA-DIRECTED DNA POLYMERASE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454