Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT2G16440 - ( DNA replication licensing factor putative )
27 Proteins interacs with AT2G16440Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G58510 | PredictedSynthetic Rescue | FSW = 0.0278
| Unknown | DEAD BOX RNA HELICASE PUTATIVE (RH11) |
AT2G24490 | Predictedtwo hybrid | FSW = 0.1022
| Unknown | RPA2 (REPLICON PROTEIN A2) PROTEIN BINDING |
AT3G02920 | Predictedtwo hybrid | FSW = 0.2699
| Unknown | REPLICATION PROTEIN-RELATED |
AT1G44900 | PredictedCo-purificationColocalizationColocalizationco-fractionationCo-fractionationAffinity Capture-WesternAffinity Capture-WesternSynthetic LethalityAffinity Capture-WesternAffinity Capture-WesternColocalizationtwo hybridReconstituted Complextwo hybridColocalizationCo-purificationco-fractionationCo-fractionationSynthetic LethalityAffinity Capture-WesternCo-expression | FSW = 0.5051
| Unknown | ATP BINDING / DNA BINDING / DNA-DEPENDENT ATPASE |
AT5G45400 | Predictedtwo hybrid | FSW = 0.2735
| Unknown | REPLICATION PROTEIN PUTATIVE |
AT5G61000 | Predictedtwo hybrid | FSW = 0.2092
| Unknown | REPLICATION PROTEIN PUTATIVE |
AT4G02060 | Predictedin vivoin vivoin vivoin vivoin vivoin vivoCo-purificationColocalizationReconstituted ComplexAffinity Capture-WesternAffinity Capture-WesternSynthetic LethalityCo-purificationCo-purificationReconstituted ComplexCo-purificationAffinity Capture-WesternCo-expression | FSW = 0.5586
| Unknown | PRL (PROLIFERA) ATP BINDING / DNA BINDING / DNA-DEPENDENT ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING |
AT5G66130 | PredictedPhenotypic Enhancement | FSW = 0.0326
| Unknown | ATRAD17 (ARABIDOPSIS THALIANA RADIATION SENSITIVE) |
AT1G26840 | Predictedtwo hybrid | FSW = 0.5538
| Unknown | ORC6 (ORIGIN RECOGNITION COMPLEX PROTEIN 6) DNA BINDING |
AT2G37560 | PredictedSynthetic Lethalitytwo hybridinteraction predictionCo-expression | FSW = 0.3572
| Unknown | ORC2 (ORIGIN RECOGNITION COMPLEX SECOND LARGEST SUBUNIT 2) DNA REPLICATION ORIGIN BINDING / PROTEIN BINDING |
AT3G25100 | PredictedAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-MSinterologs mappingsynthetic growth defectColocalization | FSW = 0.2007
| Unknown | CDC45 (CELL DIVISION CYCLE 45) |
AT2G01120 | Predictedtwo hybrid | FSW = 0.5045
| Unknown | ORC4 (ORIGIN RECOGNITION COMPLEX SUBUNIT 4) PROTEIN BINDING |
AT4G12620 | Predictedtwo hybrid | FSW = 0.2948
| Unknown | ORC1B (ORIGIN OF REPLICATION COMPLEX 1B) DNA BINDING / DOUBLE-STRANDED METHYLATED DNA BINDING / PROTEIN BINDING |
AT4G16970 | Predictedbiochemicaltwo hybridbiochemicalReconstituted Complexsynthetic growth defect | FSW = 0.2149
| Unknown | ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT4G29910 | Predictedtwo hybrid | FSW = 0.1895
| Unknown | ORC5 (ORIGIN RECOGNITION COMPLEX PROTEIN 5) PROTEIN BINDING |
AT5G16690 | Predictedtwo hybrid | FSW = 0.2721
| Unknown | ORC3 (ORIGIN RECOGNITION COMPLEX SUBUNIT 3) PROTEIN BINDING |
AT5G44635 | PredictedCo-purificationColocalizationReconstituted ComplexAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-Westerntwo hybridReconstituted ComplexSynthetic Lethalityin vitroin vivo | FSW = 0.3670
| Unknown | MINICHROMOSOME MAINTENANCE FAMILY PROTEIN / MCM FAMILY PROTEIN |
AT2G20980 | Predictedin vivoin vitrotwo hybridAffinity Capture-Western | FSW = 0.4235
| Unknown | MCM10 |
AT3G09660 | PredictedAffinity Capture-Western | FSW = 0.1947
| Unknown | MCM8 ATP BINDING / DNA BINDING / DNA-DEPENDENT ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING |
AT2G37840 | Predictedbiochemical | FSW = 0.0153
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
AT3G27000 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0106
| Unknown | ARP2 (ACTIN RELATED PROTEIN 2) PROTEIN BINDING / STRUCTURAL CONSTITUENT OF CYTOSKELETON |
AT5G22840 | Predictedbiochemical | FSW = 0.0179
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
AT5G46280 | PredictedColocalizationColocalizationAffinity Capture-WesternAffinity Capture-WesternCo-expression | FSW = 0.3171
| Unknown | DNA REPLICATION LICENSING FACTOR PUTATIVE |
AT5G49010 | PredictedAffinity Capture-MS | FSW = 0.1946
| Unknown | SLD5 (SYNTHETIC LETHALITY WITH DPB11-1 5) |
AT2G07690 | PredictedAffinity Capture-WesternAffinity Capture-Western | FSW = 0.4013
| Unknown | MINICHROMOSOME MAINTENANCE FAMILY PROTEIN / MCM FAMILY PROTEIN |
AT1G20610 | PredictedPhenotypic Suppression | FSW = 0.0223
| Unknown | CYCB23 (CYCLIN B23) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
AT1G71400 | PredictedGene fusion method | FSW = 0.0282
| Unknown | ATRLP12 (RECEPTOR LIKE PROTEIN 12) PROTEIN BINDING |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454