Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G02920 - ( replication protein-related )
28 Proteins interacs with AT3G02920Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT2G06510 | Experimentaltwo hybrid | FSW = 0.0614
| Class A:nucleusClass B:unclearClass D:nucleus (p = 0.78) | RPA1A (REPLICATION PROTEIN A 1A) DNA BINDING / NUCLEIC ACID BINDING |
AT1G44900 | Predictedtwo hybridAffinity Capture-MS | FSW = 0.2123
| Class C:nucleus | ATP BINDING / DNA BINDING / DNA-DEPENDENT ATPASE |
AT5G61000 | Predictedin vivoin vitro | FSW = 0.2035
| Class C:nucleus | REPLICATION PROTEIN PUTATIVE |
AT2G27290 | Predictedtwo hybrid | FSW = 0.0703
| Unknown | UNKNOWN PROTEIN |
AT5G13300 | Predictedtwo hybrid | FSW = 0.0795
| Unknown | SFC (SCARFACE) ARF GTPASE ACTIVATOR/ PHOSPHOINOSITIDE BINDING |
AT2G20420 | Predictedtwo hybrid | FSW = 0.0746
| Unknown | SUCCINYL-COA LIGASE (GDP-FORMING) BETA-CHAIN MITOCHONDRIAL PUTATIVE / SUCCINYL-COA SYNTHETASE BETA CHAIN PUTATIVE / SCS-BETA PUTATIVE |
AT2G37560 | Predictedtwo hybridAffinity Capture-MS | FSW = 0.1122
| Unknown | ORC2 (ORIGIN RECOGNITION COMPLEX SECOND LARGEST SUBUNIT 2) DNA REPLICATION ORIGIN BINDING / PROTEIN BINDING |
AT5G20850 | Predictedtwo hybrid | FSW = 0.0203
| Unknown | ATRAD51 ATP BINDING / DNA BINDING / DNA-DEPENDENT ATPASE/ DAMAGED DNA BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING / SEQUENCE-SPECIFIC DNA BINDING |
AT1G16590 | Predictedtwo hybrid | FSW = 0.0469
| Unknown | REV7 DNA BINDING |
AT2G25740 | Predictedtwo hybrid | FSW = 0.0645
| Unknown | ATP-DEPENDENT PROTEASE LA (LON) DOMAIN-CONTAINING PROTEIN |
AT2G27970 | Predictedtwo hybrid | FSW = 0.0424
| Unknown | CKS2 (CDK-SUBUNIT 2) CYCLIN-DEPENDENT PROTEIN KINASE/ CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
AT4G18590 | Predictedtwo hybridtwo hybrid | FSW = 0.0275
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 23 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S REPLICATION FACTOR A PROTEIN 3 (INTERPROIPR013970) NUCLEIC ACID-BINDING OB-FOLD-LIKE (INTERPROIPR016027) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT3G526302) HAS 58 BLAST HITS TO 58 PROTEINS IN 25 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 26 FUNGI - 2 PLANTS - 26 VIRUSES - 0 OTHER EUKARYOTES - 4 (SOURCE NCBI BLINK) |
AT5G55130 | Predictedtwo hybrid | FSW = 0.0288
| Unknown | CNX5 (CO-FACTOR FOR NITRATE REDUCTASE AND XANTHINE DEHYDROGENASE 5) MO-MOLYBDOPTERIN COFACTOR SULFURASE |
AT3G63000 | Predictedtwo hybrid | FSW = 0.0662
| Unknown | NPL41 (NPL4-LIKE PROTEIN 1) |
AT4G29020 | Predictedtwo hybrid | FSW = 0.0511
| Unknown | GLYCINE-RICH PROTEIN |
AT5G03790 | Predictedtwo hybrid | FSW = 0.0323
| Unknown | HB51 DNA BINDING / SEQUENCE-SPECIFIC DNA BINDING / TRANSCRIPTION FACTOR |
AT5G09880 | Predictedtwo hybrid | FSW = 0.0215
| Unknown | RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN |
AT5G14180 | Predictedtwo hybrid | FSW = 0.0124
| Unknown | MPL1 (MYZUS PERSICAE-INDUCED LIPASE 1) CATALYTIC |
AT5G45190 | Predictedtwo hybrid | FSW = 0.0838
| Unknown | CYCLIN FAMILY PROTEIN |
AT5G48630 | Predictedtwo hybrid | FSW = 0.0234
| Unknown | CYCLIN FAMILY PROTEIN |
AT2G01120 | Predictedtwo hybrid | FSW = 0.3559
| Unknown | ORC4 (ORIGIN RECOGNITION COMPLEX SUBUNIT 4) PROTEIN BINDING |
AT2G07690 | Predictedtwo hybrid | FSW = 0.1384
| Unknown | MINICHROMOSOME MAINTENANCE FAMILY PROTEIN / MCM FAMILY PROTEIN |
AT2G16440 | Predictedtwo hybrid | FSW = 0.2699
| Unknown | DNA REPLICATION LICENSING FACTOR PUTATIVE |
AT3G18630 | Predictedin vitrotwo hybridAffinity Capture-MS | FSW = 0.0224
| Unknown | URACIL DNA GLYCOSYLASE FAMILY PROTEIN |
AT5G51795 | Predictedco-fractionationCo-fractionation | FSW = 0.0611
| Unknown | KIN17 DNA-BINDING PROTEIN-RELATED |
AT4G12620 | Predictedtwo hybrid | FSW = 0.1081
| Unknown | ORC1B (ORIGIN OF REPLICATION COMPLEX 1B) DNA BINDING / DOUBLE-STRANDED METHYLATED DNA BINDING / PROTEIN BINDING |
AT4G29910 | Predictedtwo hybrid | FSW = 0.0961
| Unknown | ORC5 (ORIGIN RECOGNITION COMPLEX PROTEIN 5) PROTEIN BINDING |
AT5G46280 | Predictedtwo hybrid | FSW = 0.0939
| Unknown | DNA REPLICATION LICENSING FACTOR PUTATIVE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454