Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT4G12620 - ( ORC1B (ORIGIN OF REPLICATION COMPLEX 1B) DNA binding / double-stranded methylated DNA binding / protein binding )

55 Proteins interacs with AT4G12620
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT5G19330

Experimental

in vitro

FSW = 0.0381

Unknown

ARMADILLO/BETA-CATENIN REPEAT FAMILY PROTEIN / BTB/POZ DOMAIN-CONTAINING PROTEIN
AT1G26840

Experimental

pull down

FSW = 0.2167

Unknown

ORC6 (ORIGIN RECOGNITION COMPLEX PROTEIN 6) DNA BINDING
AT2G37560

Experimental

coimmunoprecipitation

pull down

FSW = 0.3546

Unknown

ORC2 (ORIGIN RECOGNITION COMPLEX SECOND LARGEST SUBUNIT 2) DNA REPLICATION ORIGIN BINDING / PROTEIN BINDING
AT4G29910

Experimental

coimmunoprecipitation

pull down

FSW = 0.1115

Unknown

ORC5 (ORIGIN RECOGNITION COMPLEX PROTEIN 5) PROTEIN BINDING
AT5G13060

Experimental

Reconstituted Complex

FSW = 0.0333

Unknown

ABAP1 (ARMADILLO BTB ARABIDOPSIS PROTEIN 1) PROTEIN BINDING
AT1G09770

Predicted

Affinity Capture-MS

FSW = 0.0210

Unknown

ATCDC5 (ARABIDOPSIS THALIANA CELL DIVISION CYCLE 5) DNA BINDING / TRANSCRIPTION FACTOR
AT1G74710

Predicted

synthetic growth defect

FSW = 0.0572

Unknown

ISOCHORISMATE SYNTHASE 1 (ICS1) / ISOCHORISMATE MUTASE
AT5G59690Predicted

Affinity Capture-MS

FSW = 0.0375

Unknown

HISTONE H4
AT5G58230

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0347

Unknown

MSI1 (MULTICOPY SUPRESSOR OF IRA1) PROTEIN BINDING
AT3G48750

Predicted

biochemical

FSW = 0.0135

Unknown

CDC2 (CELL DIVISION CONTROL 2) CYCLIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN BINDING / PROTEIN KINASE
AT1G20090

Predicted

two hybrid

Affinity Capture-Western

FSW = 0.1436

Unknown

ROP2 (RHO-RELATED PROTEIN FROM PLANTS 2) GTP BINDING
AT2G44680

Predicted

two hybrid

two hybrid

Reconstituted Complex

FSW = 0.1046

Unknown

CKB4 (CASEIN KINASE II BETA SUBUNIT 4) PROTEIN SERINE/THREONINE KINASE
AT2G24490

Predicted

two hybrid

FSW = 0.0489

Unknown

RPA2 (REPLICON PROTEIN A2) PROTEIN BINDING
AT3G02920

Predicted

two hybrid

FSW = 0.1081

Unknown

REPLICATION PROTEIN-RELATED
AT3G58660

Predicted

Affinity Capture-MS

FSW = 0.0396

Unknown

60S RIBOSOMAL PROTEIN-RELATED
AT1G44900

Predicted

two hybrid

Affinity Capture-MS

FSW = 0.2514

Unknown

ATP BINDING / DNA BINDING / DNA-DEPENDENT ATPASE
AT5G37720

Predicted

Affinity Capture-MS

FSW = 0.0218

Unknown

RNA AND EXPORT FACTOR-BINDING PROTEIN PUTATIVE
AT3G23620

Predicted

Affinity Capture-MS

FSW = 0.0287

Unknown

BRIX DOMAIN-CONTAINING PROTEIN
AT3G05060

Predicted

Affinity Capture-MS

FSW = 0.0158

Unknown

SAR DNA-BINDING PROTEIN PUTATIVE
AT4G02060

Predicted

two hybrid

Affinity Capture-MS

FSW = 0.2240

Unknown

PRL (PROLIFERA) ATP BINDING / DNA BINDING / DNA-DEPENDENT ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING
AT5G17020

Predicted

in vitro

in vivo

FSW = 0.0179

Unknown

XPO1A PROTEIN BINDING / PROTEIN TRANSPORTER/ RECEPTOR
AT3G25980

Predicted

Synthetic Rescue

FSW = 0.0155

Unknown

MITOTIC SPINDLE CHECKPOINT PROTEIN PUTATIVE (MAD2)
AT1G50920

Predicted

Affinity Capture-MS

FSW = 0.0631

Unknown

GTP-BINDING PROTEIN-RELATED
AT1G07270

Predicted

in vivo

in vivo

in vitro

in vitro

Affinity Capture-Western

two hybrid

Affinity Capture-Western

Phenotypic Suppression

Reconstituted Complex

FSW = 0.0712

Unknown

CELL DIVISION CONTROL PROTEIN CDC6B PUTATIVE (CDC6B)
AT2G01120

Predicted

in vivo

Affinity Capture-MS

two hybrid

FSW = 0.3027

Unknown

ORC4 (ORIGIN RECOGNITION COMPLEX SUBUNIT 4) PROTEIN BINDING
AT2G16440

Predicted

two hybrid

FSW = 0.2948

Unknown

DNA REPLICATION LICENSING FACTOR PUTATIVE
AT2G29680

Predicted

two hybrid

Affinity Capture-Western

in vivo

in vitro

FSW = 0.0422

Unknown

CDC6 (CELL DIVISION CONTROL 6)
AT2G41350

Predicted

Affinity Capture-MS

FSW = 0.1185

Unknown

UNKNOWN PROTEIN
AT3G25100

Predicted

two hybrid

Synthetic Lethality

FSW = 0.1497

Unknown

CDC45 (CELL DIVISION CYCLE 45)
AT2G07690

Predicted

Affinity Capture-MS

FSW = 0.2452

Unknown

MINICHROMOSOME MAINTENANCE FAMILY PROTEIN / MCM FAMILY PROTEIN
AT4G16970

Predicted

two hybrid

FSW = 0.1441

Unknown

ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
AT5G44635

Predicted

two hybrid

FSW = 0.1672

Unknown

MINICHROMOSOME MAINTENANCE FAMILY PROTEIN / MCM FAMILY PROTEIN
AT1G34580

Predicted

Affinity Capture-Western

Affinity Capture-Western

FSW = 0.0284

Unknown

MONOSACCHARIDE TRANSPORTER PUTATIVE
AT1G49760

Predicted

Affinity Capture-MS

FSW = 0.0509

Unknown

PAB8 (POLY(A) BINDING PROTEIN 8) RNA BINDING / TRANSLATION INITIATION FACTOR
AT1G60970

Predicted

Affinity Capture-Western

two hybrid

Affinity Capture-Western

FSW = 0.0585

Unknown

CLATHRIN ADAPTOR COMPLEX SMALL CHAIN FAMILY PROTEIN
AT2G20980

Predicted

Affinity Capture-Western

FSW = 0.2491

Unknown

MCM10
AT2G28060

Predicted

Affinity Capture-Western

Affinity Capture-Western

two hybrid

FSW = 0.0911

Unknown

PROTEIN KINASE-RELATED
AT1G10090

Predicted

synthetic growth defect

FSW = 0.0208

Unknown

UNKNOWN PROTEIN
AT1G20693

Predicted

synthetic growth defect

FSW = 0.0261

Unknown

HMGB2 (HIGH MOBILITY GROUP B 2) DNA BINDING / CHROMATIN BINDING / STRUCTURAL CONSTITUENT OF CHROMATIN / TRANSCRIPTION FACTOR
AT1G25155Predicted

synthetic growth defect

FSW = 0.0536

Unknown

ANTHRANILATE SYNTHASE BETA SUBUNIT PUTATIVE
AT1G35350

Predicted

synthetic growth defect

FSW = 0.0669

Unknown

LOCATED IN INTEGRAL TO MEMBRANE EXPRESSED IN 18 PLANT STRUCTURES EXPRESSED DURING 9 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S EXS C-TERMINAL (INTERPROIPR004342) SPX N-TERMINAL (INTERPROIPR004331) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS EXS FAMILY PROTEIN / ERD1/XPR1/SYG1 FAMILY PROTEIN (TAIRAT1G267301) HAS 734 BLAST HITS TO 697 PROTEINS IN 158 SPECIES ARCHAE - 0 BACTERIA - 21 METAZOA - 234 FUNGI - 245 PLANTS - 125 VIRUSES - 0 OTHER EUKARYOTES - 109 (SOURCE NCBI BLINK)
AT1G52740

Predicted

synthetic growth defect

FSW = 0.0261

Unknown

HTA9 (HISTONE H2A PROTEIN 9) DNA BINDING
AT1G66590

Predicted

synthetic growth defect

FSW = 0.0264

Unknown

COX19 FAMILY PROTEIN
AT1G79150

Predicted

Affinity Capture-Western

FSW = 0.0994

Unknown

BINDING
AT1G80410

Predicted

Synthetic Rescue

FSW = 0.0099

Unknown

EMB2753 (EMBRYO DEFECTIVE 2753) BINDING
AT3G18660

Predicted

synthetic growth defect

FSW = 0.0282

Unknown

PGSIP1 (PLANT GLYCOGENIN-LIKE STARCH INITIATION PROTEIN 1) TRANSFERASE TRANSFERRING GLYCOSYL GROUPS
AT3G22290

Predicted

Synthetic Lethality

FSW = 0.0632

Unknown

UNKNOWN PROTEIN
AT3G24010

Predicted

synthetic growth defect

FSW = 0.0806

Unknown

ING1 (INHIBITOR OF GROWTH 1) DNA BINDING / METHYLATED HISTONE RESIDUE BINDING
AT3G53030

Predicted

Synthetic Lethality

FSW = 0.0792

Unknown

SRPK4 (SER/ARG-RICH PROTEIN KINASE 4) KINASE/ PROTEIN KINASE
AT5G14520

Predicted

Affinity Capture-Western

Reconstituted Complex

Affinity Capture-MS

FSW = 0.0453

Unknown

PESCADILLO-RELATED
AT5G22110

Predicted

Affinity Capture-MS

FSW = 0.0635

Unknown

ATDPB2 (ARABIDOPSIS THALIANA DNA POLYMERASE EPSILON SUBUNIT B2) DNA BINDING / DNA-DIRECTED DNA POLYMERASE/ NUCLEIC ACID BINDING
AT5G48010

Predicted

Reconstituted Complex

Reconstituted Complex

two hybrid

Reconstituted Complex

two hybrid

FSW = 0.0540

Unknown

THAS1 (THALIANOL SYNTHASE 1) CATALYTIC/ THALIANOL SYNTHASE
AT5G56740

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0769

Unknown

HAG2 (HISTONE ACETYLTRANSFERASE OF THE GNAT FAMILY 2) H4 HISTONE ACETYLTRANSFERASE/ HISTONE ACETYLTRANSFERASE
AT4G21480

Predicted

two hybrid

FSW = 0.0135

Unknown

CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER
AT3G03110

Predicted

in vitro

in vivo

FSW = 0.0135

Unknown

XPO1B BINDING / PROTEIN TRANSPORTER

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454