Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT4G12620 - ( ORC1B (ORIGIN OF REPLICATION COMPLEX 1B) DNA binding / double-stranded methylated DNA binding / protein binding )
55 Proteins interacs with AT4G12620Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT5G19330 | Experimentalin vitro | FSW = 0.0381
| Unknown | ARMADILLO/BETA-CATENIN REPEAT FAMILY PROTEIN / BTB/POZ DOMAIN-CONTAINING PROTEIN |
AT1G26840 | Experimentalpull down | FSW = 0.2167
| Unknown | ORC6 (ORIGIN RECOGNITION COMPLEX PROTEIN 6) DNA BINDING |
AT2G37560 | Experimentalcoimmunoprecipitationpull down | FSW = 0.3546
| Unknown | ORC2 (ORIGIN RECOGNITION COMPLEX SECOND LARGEST SUBUNIT 2) DNA REPLICATION ORIGIN BINDING / PROTEIN BINDING |
AT4G29910 | Experimentalcoimmunoprecipitationpull down | FSW = 0.1115
| Unknown | ORC5 (ORIGIN RECOGNITION COMPLEX PROTEIN 5) PROTEIN BINDING |
AT5G13060 | ExperimentalReconstituted Complex | FSW = 0.0333
| Unknown | ABAP1 (ARMADILLO BTB ARABIDOPSIS PROTEIN 1) PROTEIN BINDING |
AT1G09770 | PredictedAffinity Capture-MS | FSW = 0.0210
| Unknown | ATCDC5 (ARABIDOPSIS THALIANA CELL DIVISION CYCLE 5) DNA BINDING / TRANSCRIPTION FACTOR |
AT1G74710 | Predictedsynthetic growth defect | FSW = 0.0572
| Unknown | ISOCHORISMATE SYNTHASE 1 (ICS1) / ISOCHORISMATE MUTASE |
AT5G59690 | PredictedAffinity Capture-MS | FSW = 0.0375
| Unknown | HISTONE H4 |
AT5G58230 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0347
| Unknown | MSI1 (MULTICOPY SUPRESSOR OF IRA1) PROTEIN BINDING |
AT3G48750 | Predictedbiochemical | FSW = 0.0135
| Unknown | CDC2 (CELL DIVISION CONTROL 2) CYCLIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN BINDING / PROTEIN KINASE |
AT1G20090 | Predictedtwo hybridAffinity Capture-Western | FSW = 0.1436
| Unknown | ROP2 (RHO-RELATED PROTEIN FROM PLANTS 2) GTP BINDING |
AT2G44680 | Predictedtwo hybridtwo hybridReconstituted Complex | FSW = 0.1046
| Unknown | CKB4 (CASEIN KINASE II BETA SUBUNIT 4) PROTEIN SERINE/THREONINE KINASE |
AT2G24490 | Predictedtwo hybrid | FSW = 0.0489
| Unknown | RPA2 (REPLICON PROTEIN A2) PROTEIN BINDING |
AT3G02920 | Predictedtwo hybrid | FSW = 0.1081
| Unknown | REPLICATION PROTEIN-RELATED |
AT3G58660 | PredictedAffinity Capture-MS | FSW = 0.0396
| Unknown | 60S RIBOSOMAL PROTEIN-RELATED |
AT1G44900 | Predictedtwo hybridAffinity Capture-MS | FSW = 0.2514
| Unknown | ATP BINDING / DNA BINDING / DNA-DEPENDENT ATPASE |
AT5G37720 | PredictedAffinity Capture-MS | FSW = 0.0218
| Unknown | RNA AND EXPORT FACTOR-BINDING PROTEIN PUTATIVE |
AT3G23620 | PredictedAffinity Capture-MS | FSW = 0.0287
| Unknown | BRIX DOMAIN-CONTAINING PROTEIN |
AT3G05060 | PredictedAffinity Capture-MS | FSW = 0.0158
| Unknown | SAR DNA-BINDING PROTEIN PUTATIVE |
AT4G02060 | Predictedtwo hybridAffinity Capture-MS | FSW = 0.2240
| Unknown | PRL (PROLIFERA) ATP BINDING / DNA BINDING / DNA-DEPENDENT ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING |
AT5G17020 | Predictedin vitroin vivo | FSW = 0.0179
| Unknown | XPO1A PROTEIN BINDING / PROTEIN TRANSPORTER/ RECEPTOR |
AT3G25980 | PredictedSynthetic Rescue | FSW = 0.0155
| Unknown | MITOTIC SPINDLE CHECKPOINT PROTEIN PUTATIVE (MAD2) |
AT1G50920 | PredictedAffinity Capture-MS | FSW = 0.0631
| Unknown | GTP-BINDING PROTEIN-RELATED |
AT1G07270 | Predictedin vivoin vivoin vitroin vitroAffinity Capture-Westerntwo hybridAffinity Capture-WesternPhenotypic SuppressionReconstituted Complex | FSW = 0.0712
| Unknown | CELL DIVISION CONTROL PROTEIN CDC6B PUTATIVE (CDC6B) |
AT2G01120 | Predictedin vivoAffinity Capture-MStwo hybrid | FSW = 0.3027
| Unknown | ORC4 (ORIGIN RECOGNITION COMPLEX SUBUNIT 4) PROTEIN BINDING |
AT2G16440 | Predictedtwo hybrid | FSW = 0.2948
| Unknown | DNA REPLICATION LICENSING FACTOR PUTATIVE |
AT2G29680 | Predictedtwo hybridAffinity Capture-Westernin vivoin vitro | FSW = 0.0422
| Unknown | CDC6 (CELL DIVISION CONTROL 6) |
AT2G41350 | PredictedAffinity Capture-MS | FSW = 0.1185
| Unknown | UNKNOWN PROTEIN |
AT3G25100 | Predictedtwo hybridSynthetic Lethality | FSW = 0.1497
| Unknown | CDC45 (CELL DIVISION CYCLE 45) |
AT2G07690 | PredictedAffinity Capture-MS | FSW = 0.2452
| Unknown | MINICHROMOSOME MAINTENANCE FAMILY PROTEIN / MCM FAMILY PROTEIN |
AT4G16970 | Predictedtwo hybrid | FSW = 0.1441
| Unknown | ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT5G44635 | Predictedtwo hybrid | FSW = 0.1672
| Unknown | MINICHROMOSOME MAINTENANCE FAMILY PROTEIN / MCM FAMILY PROTEIN |
AT1G34580 | PredictedAffinity Capture-WesternAffinity Capture-Western | FSW = 0.0284
| Unknown | MONOSACCHARIDE TRANSPORTER PUTATIVE |
AT1G49760 | PredictedAffinity Capture-MS | FSW = 0.0509
| Unknown | PAB8 (POLY(A) BINDING PROTEIN 8) RNA BINDING / TRANSLATION INITIATION FACTOR |
AT1G60970 | PredictedAffinity Capture-Westerntwo hybridAffinity Capture-Western | FSW = 0.0585
| Unknown | CLATHRIN ADAPTOR COMPLEX SMALL CHAIN FAMILY PROTEIN |
AT2G20980 | PredictedAffinity Capture-Western | FSW = 0.2491
| Unknown | MCM10 |
AT2G28060 | PredictedAffinity Capture-WesternAffinity Capture-Westerntwo hybrid | FSW = 0.0911
| Unknown | PROTEIN KINASE-RELATED |
AT1G10090 | Predictedsynthetic growth defect | FSW = 0.0208
| Unknown | UNKNOWN PROTEIN |
AT1G20693 | Predictedsynthetic growth defect | FSW = 0.0261
| Unknown | HMGB2 (HIGH MOBILITY GROUP B 2) DNA BINDING / CHROMATIN BINDING / STRUCTURAL CONSTITUENT OF CHROMATIN / TRANSCRIPTION FACTOR |
AT1G25155 | Predictedsynthetic growth defect | FSW = 0.0536
| Unknown | ANTHRANILATE SYNTHASE BETA SUBUNIT PUTATIVE |
AT1G35350 | Predictedsynthetic growth defect | FSW = 0.0669
| Unknown | LOCATED IN INTEGRAL TO MEMBRANE EXPRESSED IN 18 PLANT STRUCTURES EXPRESSED DURING 9 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S EXS C-TERMINAL (INTERPROIPR004342) SPX N-TERMINAL (INTERPROIPR004331) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS EXS FAMILY PROTEIN / ERD1/XPR1/SYG1 FAMILY PROTEIN (TAIRAT1G267301) HAS 734 BLAST HITS TO 697 PROTEINS IN 158 SPECIES ARCHAE - 0 BACTERIA - 21 METAZOA - 234 FUNGI - 245 PLANTS - 125 VIRUSES - 0 OTHER EUKARYOTES - 109 (SOURCE NCBI BLINK) |
AT1G52740 | Predictedsynthetic growth defect | FSW = 0.0261
| Unknown | HTA9 (HISTONE H2A PROTEIN 9) DNA BINDING |
AT1G66590 | Predictedsynthetic growth defect | FSW = 0.0264
| Unknown | COX19 FAMILY PROTEIN |
AT1G79150 | PredictedAffinity Capture-Western | FSW = 0.0994
| Unknown | BINDING |
AT1G80410 | PredictedSynthetic Rescue | FSW = 0.0099
| Unknown | EMB2753 (EMBRYO DEFECTIVE 2753) BINDING |
AT3G18660 | Predictedsynthetic growth defect | FSW = 0.0282
| Unknown | PGSIP1 (PLANT GLYCOGENIN-LIKE STARCH INITIATION PROTEIN 1) TRANSFERASE TRANSFERRING GLYCOSYL GROUPS |
AT3G22290 | PredictedSynthetic Lethality | FSW = 0.0632
| Unknown | UNKNOWN PROTEIN |
AT3G24010 | Predictedsynthetic growth defect | FSW = 0.0806
| Unknown | ING1 (INHIBITOR OF GROWTH 1) DNA BINDING / METHYLATED HISTONE RESIDUE BINDING |
AT3G53030 | PredictedSynthetic Lethality | FSW = 0.0792
| Unknown | SRPK4 (SER/ARG-RICH PROTEIN KINASE 4) KINASE/ PROTEIN KINASE |
AT5G14520 | PredictedAffinity Capture-WesternReconstituted ComplexAffinity Capture-MS | FSW = 0.0453
| Unknown | PESCADILLO-RELATED |
AT5G22110 | PredictedAffinity Capture-MS | FSW = 0.0635
| Unknown | ATDPB2 (ARABIDOPSIS THALIANA DNA POLYMERASE EPSILON SUBUNIT B2) DNA BINDING / DNA-DIRECTED DNA POLYMERASE/ NUCLEIC ACID BINDING |
AT5G48010 | PredictedReconstituted ComplexReconstituted Complextwo hybridReconstituted Complextwo hybrid | FSW = 0.0540
| Unknown | THAS1 (THALIANOL SYNTHASE 1) CATALYTIC/ THALIANOL SYNTHASE |
AT5G56740 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0769
| Unknown | HAG2 (HISTONE ACETYLTRANSFERASE OF THE GNAT FAMILY 2) H4 HISTONE ACETYLTRANSFERASE/ HISTONE ACETYLTRANSFERASE |
AT4G21480 | Predictedtwo hybrid | FSW = 0.0135
| Unknown | CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER |
AT3G03110 | Predictedin vitroin vivo | FSW = 0.0135
| Unknown | XPO1B BINDING / PROTEIN TRANSPORTER |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454