Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT2G29680 - ( CDC6 (CELL DIVISION CONTROL 6) )
48 Proteins interacs with AT2G29680Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G01280 | PredictedAffinity Capture-MS | FSW = 0.2696
| Unknown | VDAC1 (VOLTAGE DEPENDENT ANION CHANNEL 1) VOLTAGE-GATED ANION CHANNEL |
AT1G14010 | PredictedAffinity Capture-MS | FSW = 0.3674
| Unknown | EMP24/GP25L/P24 FAMILY PROTEIN |
AT2G01690 | PredictedAffinity Capture-MS | FSW = 0.0050
| Unknown | BINDING |
AT2G04940 | PredictedAffinity Capture-MS | FSW = 0.2383
| Unknown | SCRAMBLASE-RELATED |
AT3G09820 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSCo-purificationAffinity Capture-MSCo-purification | FSW = 0.4797
| Unknown | ADK1 (ADENOSINE KINASE 1) ADENOSINE KINASE/ COPPER ION BINDING |
AT5G15450 | PredictedAffinity Capture-MS | FSW = 0.1380
| Unknown | CLPB3 (CASEIN LYTIC PROTEINASE B3) ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING |
AT4G08690 | PredictedAffinity Capture-MS | FSW = 0.4271
| Unknown | SEC14 CYTOSOLIC FACTOR FAMILY PROTEIN / PHOSPHOGLYCERIDE TRANSFER FAMILY PROTEIN |
AT1G63110 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3425
| Unknown | CELL DIVISION CYCLE PROTEIN-RELATED |
AT3G46900 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.4424
| Unknown | COPT2 COPPER ION TRANSMEMBRANE TRANSPORTER/ HIGH AFFINITY COPPER ION TRANSMEMBRANE TRANSPORTER |
AT5G59960 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.5359
| Unknown | UNKNOWN PROTEIN |
AT4G02060 | Predictedtwo hybridin vivoAffinity Capture-Western | FSW = 0.1021
| Unknown | PRL (PROLIFERA) ATP BINDING / DNA BINDING / DNA-DEPENDENT ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING |
AT2G29570 | Predictedtwo hybrid | FSW = 0.0159
| Unknown | PCNA2 (PROLIFERATING CELL NUCLEAR ANTIGEN 2) DNA BINDING / DNA POLYMERASE PROCESSIVITY FACTOR |
AT1G30810 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.4958
| Unknown | TRANSCRIPTION FACTOR |
AT3G08980 | PredictedAffinity Capture-MS | FSW = 0.4261
| Unknown | SIGNAL PEPTIDASE I FAMILY PROTEIN |
AT1G57550 | PredictedAffinity Capture-MS | FSW = 0.0087
| Unknown | HYDROPHOBIC PROTEIN PUTATIVE / LOW TEMPERATURE AND SALT RESPONSIVE PROTEIN PUTATIVE |
AT2G37560 | Predictedtwo hybridAffinity Capture-Western | FSW = 0.0359
| Unknown | ORC2 (ORIGIN RECOGNITION COMPLEX SECOND LARGEST SUBUNIT 2) DNA REPLICATION ORIGIN BINDING / PROTEIN BINDING |
AT4G17190 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.1200
| Unknown | FPS2 (FARNESYL DIPHOSPHATE SYNTHASE 2) DIMETHYLALLYLTRANSTRANSFERASE/ GERANYLTRANSTRANSFERASE |
AT3G12280 | PredictedPhenotypic Enhancement | FSW = 0.0119
| Unknown | RBR1 (RETINOBLASTOMA-RELATED 1) TRANSCRIPTION FACTOR BINDING |
AT5G57815 | Predictedtwo hybrid | FSW = 0.0200
| Unknown | CYTOCHROME C OXIDASE SUBUNIT 6B PUTATIVE |
AT4G12620 | Predictedtwo hybridAffinity Capture-Westernin vivoin vitro | FSW = 0.0422
| Unknown | ORC1B (ORIGIN OF REPLICATION COMPLEX 1B) DNA BINDING / DOUBLE-STRANDED METHYLATED DNA BINDING / PROTEIN BINDING |
AT5G11300 | Predictedin vivoin vivo | FSW = 0.0268
| Unknown | CYC3B (MITOTIC-LIKE CYCLIN 3B FROM ARABIDOPSIS) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
AT5G46280 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternAffinity Capture-Westerntwo hybridtwo hybridAffinity Capture-MSin vitroin vivoin vivoin vitroAffinity Capture-MStwo hybridinterologs mappingCo-purification | FSW = 0.0931
| Unknown | DNA REPLICATION LICENSING FACTOR PUTATIVE |
AT5G19360 | Predictedin vitroin vivo | FSW = 0.0070
| Unknown | CPK34 ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT1G05830 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3971
| Unknown | ATX2 (ARABIDOPSIS TRITHORAX-LIKE PROTEIN 2) DNA BINDING / HISTONE METHYLTRANSFERASE(H3-K4 SPECIFIC) |
AT1G06790 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3030
| Unknown | RNA POLYMERASE RPB7 N-TERMINAL DOMAIN-CONTAINING PROTEIN |
AT1G10350 | PredictedAffinity Capture-MS | FSW = 0.3361
| Unknown | DNAJ HEAT SHOCK PROTEIN PUTATIVE |
AT1G21370 | PredictedAffinity Capture-MS | FSW = 0.2147
| Unknown | UNKNOWN PROTEIN |
AT1G73810 | Predictedtwo hybridAffinity Capture-MS | FSW = 0.1455
| Unknown | UNKNOWN PROTEIN |
AT1G74250 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.5007
| Unknown | DNAJ HEAT SHOCK N-TERMINAL DOMAIN-CONTAINING PROTEIN |
AT2G20410 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.4747
| Unknown | ACTIVATING SIGNAL COINTEGRATOR-RELATED |
AT2G21890 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MStwo hybridco-fractionationCo-fractionation | FSW = 0.0972
| Unknown | CAD3 (CINNAMYL ALCOHOL DEHYDROGENASE HOMOLOG 3) BINDING / CATALYTIC/ OXIDOREDUCTASE/ ZINC ION BINDING |
AT2G23070 | PredictedAffinity Capture-MStwo hybridAffinity Capture-MStwo hybridAffinity Capture-MStwo hybrid | FSW = 0.0387
| Unknown | CASEIN KINASE II ALPHA CHAIN PUTATIVE |
AT1G18550 | PredictedAffinity Capture-MS | FSW = 0.2421
| Unknown | ATP BINDING / MICROTUBULE MOTOR |
AT1G49520 | PredictedCo-purification | FSW = 0.0140
| Unknown | SWIB COMPLEX BAF60B DOMAIN-CONTAINING PROTEIN |
AT3G52590 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3952
| Unknown | UBQ1 (UBIQUITIN EXTENSION PROTEIN 1) PROTEIN BINDING / STRUCTURAL CONSTITUENT OF RIBOSOME |
AT3G53880 | PredictedCo-purification | FSW = 0.3232
| Unknown | ALDO/KETO REDUCTASE FAMILY PROTEIN |
AT4G00810 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.4461
| Unknown | 60S ACIDIC RIBOSOMAL PROTEIN P1 (RPP1B) |
AT4G16265 | Predictedtwo hybrid | FSW = 0.1000
| Unknown | NRPB9B DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ NUCLEIC ACID BINDING / TRANSCRIPTION REGULATOR/ ZINC ION BINDING |
AT4G29910 | PredictedAffinity Capture-MSAffinity Capture-MStwo hybridtwo hybridAffinity Capture-MSAffinity Capture-MSinterologs mappingReconstituted Complex | FSW = 0.5892
| Unknown | ORC5 (ORIGIN RECOGNITION COMPLEX PROTEIN 5) PROTEIN BINDING |
AT4G31770 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.5918
| Unknown | CALCINEURIN-LIKE PHOSPHOESTERASE FAMILY PROTEIN |
AT5G16290 | Predictedtwo hybridAffinity Capture-MSAffinity Capture-MS | FSW = 0.1047
| Unknown | ACETOLACTATE SYNTHASE SMALL SUBUNIT PUTATIVE |
AT5G49970 | PredictedAffinity Capture-MS | FSW = 0.1798
| Unknown | ATPPOX (A THALIANA PYRIDOXIN (PYRODOXAMINE) 5-PHOSPHATE OXIDASE) PYRIDOXAMINE-PHOSPHATE OXIDASE |
AT2G29940 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.5404
| Unknown | PDR3 (PLEIOTROPIC DRUG RESISTANCE 3) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES |
AT3G05760 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3369
| Unknown | NUCLEIC ACID BINDING / ZINC ION BINDING |
AT4G32850 | PredictedAffinity Capture-MS | FSW = 0.0154
| Unknown | NPAP (NUCLEAR POLY(A) POLYMERASE) NUCLEOTIDYLTRANSFERASE/ PROTEIN BINDING |
AT5G16960 | PredictedAffinity Capture-MS | FSW = 0.3877
| Unknown | NADP-DEPENDENT OXIDOREDUCTASE PUTATIVE |
AT5G59890 | PredictedAffinity Capture-MS | FSW = 0.2758
| Unknown | ADF4 (ACTIN DEPOLYMERIZING FACTOR 4) ACTIN BINDING |
AT1G07270 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.0651
| Unknown | CELL DIVISION CONTROL PROTEIN CDC6B PUTATIVE (CDC6B) |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454