Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G11300 - ( CYC3B (MITOTIC-LIKE CYCLIN 3B FROM ARABIDOPSIS) cyclin-dependent protein kinase regulator )

40 Proteins interacs with AT5G11300
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT2G40550

Experimental

two hybrid

FSW = 0.0818

Unknown

ETG1 (E2F TARGET GENE 1)
AT3G48750

Experimental

protein complementation assay

two hybrid

FSW = 0.1079

Unknown

CDC2 (CELL DIVISION CONTROL 2) CYCLIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN BINDING / PROTEIN KINASE
AT1G66750

Experimental

two hybrid

FSW = 0.1669

Unknown

CAK4 (CDK-ACTIVATING KINASE 4) KINASE/ PROTEIN BINDING / PROTEIN SERINE/THREONINE KINASE
AT5G48820

Experimental

two hybrid

FSW = 0.1633

Unknown

ICK6 (INHIBITOR/INTERACTOR WITH CYCLIN-DEPENDENT KINASE) CYCLIN BINDING / CYCLIN-DEPENDENT PROTEIN KINASE INHIBITOR
AT1G47870

Experimental

Reconstituted Complex

FSW = 0.1620

Unknown

ATE2F2 DNA BINDING / PROTEIN HETERODIMERIZATION/ TRANSCRIPTION FACTOR
AT5G03415

Experimental

protein complementation assay

two hybrid

FSW = 0.1451

Unknown

DPB PROTEIN BINDING / PROTEIN HETERODIMERIZATION
AT1G18040

Experimental

protein complementation assay

FSW = 0.0537

Unknown

CDKD13 (CYCLIN-DEPENDENT KINASE D13) KINASE/ PROTEIN KINASE
AT5G22220

Experimental

two hybrid

FSW = 0.1672

Unknown

E2F1 DNA BINDING / PROTEIN BINDING / TRANSCRIPTION FACTOR
AT1G73690

Experimental

protein complementation assay

two hybrid

FSW = 0.0256

Unknown

CDKD11 (CYCLIN-DEPENDENT KINASE D11) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
AT1G76540

Experimental

pull down

Reconstituted Complex

protein complementation assay

FSW = 0.1440

Unknown

CDKB21 (CYCLIN-DEPENDENT KINASE B21) CYCLIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN BINDING
AT3G54180

Experimental

two hybrid

protein complementation assay

FSW = 0.2560

Unknown

CDKB11 (CYCLIN-DEPENDENT KINASE B11) CYCLIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN BINDING
AT2G38620

Experimental

protein complementation assay

two hybrid

FSW = 0.1900

Unknown

CDKB12 (CYCLIN-DEPENDENT KINASE B12) CYCLIN BINDING / KINASE/ PROTEIN SERINE/THREONINE KINASE
AT5G63610

Experimental

protein complementation assay

FSW = 0.0449

Unknown

CDKE1 (CYCLIN-DEPENDENT KINASE E1) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
AT1G20930

Experimental

two hybrid

FSW = 0.2064

Unknown

CDKB22 (CYCLIN-DEPENDENT KINASE B22) CYCLIN-DEPENDENT PROTEIN KINASE/ KINASE
AT2G27290

Predicted

two hybrid

FSW = 0.0837

Unknown

UNKNOWN PROTEIN
AT5G13300

Predicted

two hybrid

FSW = 0.0234

Unknown

SFC (SCARFACE) ARF GTPASE ACTIVATOR/ PHOSPHOINOSITIDE BINDING
AT5G19330

Predicted

Phenotypic Enhancement

FSW = 0.0141

Unknown

ARMADILLO/BETA-CATENIN REPEAT FAMILY PROTEIN / BTB/POZ DOMAIN-CONTAINING PROTEIN
AT1G16970

Predicted

two hybrid

Affinity Capture-MS

FSW = 0.0306

Unknown

KU70 (ARABIDOPSIS THALIANA KU70 HOMOLOG) DOUBLE-STRANDED DNA BINDING / PROTEIN BINDING
AT5G53180

Predicted

two hybrid

FSW = 0.0409

Unknown

PTB2 (POLYPYRIMIDINE TRACT-BINDING PROTEIN 2) RNA BINDING / NUCLEIC ACID BINDING / NUCLEOTIDE BINDING
AT3G18130

Predicted

Affinity Capture-MS

two hybrid

Reconstituted Complex

FSW = 0.0101

Unknown

RACK1C_AT (RECEPTOR FOR ACTIVATED C KINASE 1 C) NUCLEOTIDE BINDING
AT2G29570

Predicted

Affinity Capture-Western

FSW = 0.0956

Unknown

PCNA2 (PROLIFERATING CELL NUCLEAR ANTIGEN 2) DNA BINDING / DNA POLYMERASE PROCESSIVITY FACTOR
AT5G11510

Predicted

in vivo

Affinity Capture-MS

in vivo

in vitro

FSW = 0.1393

Unknown

MYB3R-4 (MYB DOMAIN PROTEIN 3R-4) DNA BINDING / TRANSCRIPTION COACTIVATOR/ TRANSCRIPTION FACTOR
AT5G08380

Predicted

two hybrid

FSW = 0.0459

Unknown

ATAGAL1 (ARABIDOPSIS THALIANA ALPHA-GALACTOSIDASE 1) ALPHA-GALACTOSIDASE/ CATALYTIC/ HYDROLASE HYDROLYZING O-GLYCOSYL COMPOUNDS
AT5G40820

Predicted

Phenotypic Suppression

FSW = 0.0253

Unknown

ATRAD3 BINDING / INOSITOL OR PHOSPHATIDYLINOSITOL KINASE/ PHOSPHOTRANSFERASE ALCOHOL GROUP AS ACCEPTOR / PROTEIN SERINE/THREONINE KINASE
AT2G44420

Predicted

two hybrid

FSW = 0.0431

Unknown

PROTEIN N-TERMINAL ASPARAGINE AMIDOHYDROLASE FAMILY PROTEIN
AT4G29020

Predicted

two hybrid

FSW = 0.0372

Unknown

GLYCINE-RICH PROTEIN
AT5G06150

Predicted

Phenotypic Suppression

Phenotypic Suppression

Phenotypic Suppression

Phenotypic Suppression

Phenotypic Suppression

Phenotypic Suppression

Phenotypic Enhancement

Phenotypic Enhancement

Phenotypic Enhancement

Phenotypic Enhancement

Phenotypic Enhancement

Phenotypic Enhancement

FSW = 0.0622

Unknown

CYC1BAT CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR
AT5G37290

Predicted

two hybrid

FSW = 0.0248

Unknown

ARMADILLO/BETA-CATENIN REPEAT FAMILY PROTEIN
AT5G56150

Predicted

Phenotypic Suppression

FSW = 0.0174

Unknown

UBC30 (UBIQUITIN-CONJUGATING ENZYME 30) UBIQUITIN-PROTEIN LIGASE
AT1G12470

Predicted

Affinity Capture-MS

FSW = 0.0195

Unknown

PEP3/VPS18/DEEP ORANGE FAMILY PROTEIN
AT2G29680

Predicted

in vivo

in vivo

FSW = 0.0268

Unknown

CDC6 (CELL DIVISION CONTROL 6)
AT3G12280

Predicted

in vitro

in vivo

in vivo

in vitro

in vitro

in vivo

in vivo

in vivo

in vitro

Affinity Capture-MS

FSW = 0.0475

Unknown

RBR1 (RETINOBLASTOMA-RELATED 1) TRANSCRIPTION FACTOR BINDING
AT3G19040

Predicted

in vitro

in vivo

FSW = 0.0618

Unknown

HAF2 (HISTONE ACETYLTRANSFERASE OF THE TAFII250 FAMILY 2) DNA BINDING / HISTONE ACETYLTRANSFERASE/ TRANSCRIPTION COFACTOR
AT4G11080

Predicted

in vitro

in vivo

FSW = 0.1208

Unknown

HIGH MOBILITY GROUP (HMG1/2) FAMILY PROTEIN
AT5G21274

Predicted

Reconstituted Complex

FSW = 0.0053

Unknown

CAM6 (CALMODULIN 6) CALCIUM ION BINDING
AT5G27080

Predicted

Affinity Capture-Western

two hybrid

in vivo

FSW = 0.0162

Unknown

WD-40 REPEAT FAMILY PROTEIN
AT5G44635

Predicted

Affinity Capture-MS

FSW = 0.0068

Unknown

MINICHROMOSOME MAINTENANCE FAMILY PROTEIN / MCM FAMILY PROTEIN
AT5G26680

Predicted

biochemical

Reconstituted Complex

Affinity Capture-Western

FSW = 0.0237

Unknown

ENDONUCLEASE PUTATIVE
AT5G42190

Predicted

in vivo

FSW = 0.0117

Unknown

ASK2 (ARABIDOPSIS SKP1-LIKE 2) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE
AT3G09550

Predicted

Gene fusion method

FSW = 0.0196

Unknown

PROTEIN BINDING

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Proteins

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454