Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G18130 - ( RACK1C_AT (RECEPTOR FOR ACTIVATED C KINASE 1 C) nucleotide binding )
77 Proteins interacs with AT3G18130Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT5G15200 | PredictedAffinity Capture-MS | FSW = 0.1174
| Class C:nucleus | 40S RIBOSOMAL PROTEIN S9 (RPS9B) |
AT5G62690 | PredictedAffinity Capture-MSin vivoin vitro | FSW = 0.0077
| Class C:nucleus | TUB2 GTP BINDING / GTPASE/ STRUCTURAL MOLECULE |
AT2G06510 | PredictedAffinity Capture-MS | FSW = 0.0183
| Class C:nucleus | RPA1A (REPLICATION PROTEIN A 1A) DNA BINDING / NUCLEIC ACID BINDING |
AT5G20290 | PredictedAffinity Capture-MS | FSW = 0.1041
| Class C:nucleus | 40S RIBOSOMAL PROTEIN S8 (RPS8A) |
AT4G27800 | PredictedGene fusion method | FSW = 0.1095
| Class C:nucleus | PROTEIN PHOSPHATASE 2C PPH1 / PP2C PPH1 (PPH1) |
AT5G67630 | PredictedAffinity Capture-MS | FSW = 0.0055
| Class C:nucleus | DNA HELICASE PUTATIVE |
AT4G34460 | PredictedAffinity Capture-MSin vitro | FSW = 0.0027
| Class C:nucleus | AGB1 (GTP BINDING PROTEIN BETA 1) GTPASE/ NUCLEOTIDE BINDING / PROTEIN BINDING |
AT4G00100 | PredictedAffinity Capture-MS | FSW = 0.1425
| Class C:nucleus | ATRPS13A (ARABIDOPSIS THALIANA RIBOSOMAL PROTEIN S13A) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT5G57015 | PredictedAffinity Capture-MS | FSW = 0.0358
| Class C:nucleus | CKL12 (CASEIN KINASE I-LIKE 12) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT3G56990 | PredictedAffinity Capture-MS | FSW = 0.0647
| Class C:nucleus | EDA7 (EMBRYO SAC DEVELOPMENT ARREST 7) |
AT1G03190 | PredictedAffinity Capture-MS | FSW = 0.0117
| Class C:nucleus | UVH6 (ULTRAVIOLET HYPERSENSITIVE 6) ATP BINDING / ATP-DEPENDENT DNA HELICASE/ ATP-DEPENDENT HELICASE/ DNA BINDING / HYDROLASE ACTING ON ACID ANHYDRIDES IN PHOSPHORUS-CONTAINING ANHYDRIDES / NUCLEIC ACID BINDING |
AT3G12860 | PredictedAffinity Capture-MS | FSW = 0.1063
| Class C:nucleus | NUCLEOLAR PROTEIN NOP56 PUTATIVE |
AT3G62310 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.0728
| Class C:nucleus | RNA HELICASE PUTATIVE |
AT1G63810 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0922
| Class C:nucleus | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 21 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S NRAP PROTEIN (INTERPROIPR005554) HAS 268 BLAST HITS TO 263 PROTEINS IN 124 SPECIES ARCHAE - 3 BACTERIA - 0 METAZOA - 116 FUNGI - 89 PLANTS - 17 VIRUSES - 0 OTHER EUKARYOTES - 43 (SOURCE NCBI BLINK) |
AT5G42080 | Predictedin vitrotwo hybrid | FSW = 0.0105
| Unknown | ADL1 (ARABIDOPSIS DYNAMIN-LIKE PROTEIN) GTP BINDING / GTPASE/ PROTEIN BINDING |
AT2G17360 | PredictedAffinity Capture-MS | FSW = 0.1030
| Unknown | 40S RIBOSOMAL PROTEIN S4 (RPS4A) |
AT2G37270 | PredictedAffinity Capture-MS | FSW = 0.0633
| Unknown | ATRPS5B (RIBOSOMAL PROTEIN 5B) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT5G27850 | PredictedAffinity Capture-MS | FSW = 0.0296
| Unknown | 60S RIBOSOMAL PROTEIN L18 (RPL18C) |
AT1G07770 | PredictedAffinity Capture-MS | FSW = 0.1031
| Unknown | RPS15A (RIBOSOMAL PROTEIN S15A) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT4G14800 | PredictedAffinity Capture-MS | FSW = 0.0070
| Unknown | PBD2 (20S PROTEASOME BETA SUBUNIT 2) PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT5G25780 | PredictedAffinity Capture-MS | FSW = 0.0540
| Unknown | EIF3B-2 (EUKARYOTIC TRANSLATION INITIATION FACTOR 3B-2) NUCLEIC ACID BINDING / PROTEIN BINDING / TRANSLATION INITIATION FACTOR |
AT1G18080 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.4517
| Unknown | ATARCA NUCLEOTIDE BINDING |
AT3G52140 | PredictedAffinity Capture-MS | FSW = 0.0365
| Unknown | TETRATRICOPEPTIDE REPEAT (TPR)-CONTAINING PROTEIN |
AT2G33340 | PredictedCo-purification | FSW = 0.0180
| Unknown | NUCLEOTIDE BINDING / UBIQUITIN-PROTEIN LIGASE |
AT4G38460 | PredictedGene fusion method | FSW = 0.0976
| Unknown | GGR (GERANYLGERANYL REDUCTASE) FARNESYLTRANSTRANSFERASE |
AT5G52640 | Predictedsynthetic growth defect | FSW = 0.0117
| Unknown | ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING |
AT2G20040 | Predictedtwo hybrid | FSW = 0.0400
| Unknown | ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING |
AT1G79930 | PredictedAffinity Capture-MS | FSW = 0.0405
| Unknown | HSP91 ATP BINDING |
AT3G61200 | Predictedtwo hybrid | FSW = 0.0129
| Unknown | THIOESTERASE FAMILY PROTEIN |
AT2G44950 | Predictedsynthetic growth defect | FSW = 0.0227
| Unknown | HUB1 (HISTONE MONO-UBIQUITINATION 1) PROTEIN BINDING / PROTEIN HOMODIMERIZATION/ UBIQUITIN-PROTEIN LIGASE/ ZINC ION BINDING |
AT1G07030 | PredictedGene fusion method | FSW = 0.0779
| Unknown | MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN |
AT5G61240 | PredictedGene fusion methodCo-expression | FSW = 0.2370
| Unknown | PROTEIN BINDING |
AT5G03730 | PredictedAffinity Capture-MSin vivoin vitrotwo hybrid | FSW = 0.0089
| Unknown | CTR1 (CONSTITUTIVE TRIPLE RESPONSE 1) KINASE/ PROTEIN BINDING / PROTEIN SERINE/THREONINE KINASE/ PROTEIN SERINE/THREONINE/TYROSINE KINASE |
AT2G29100 | Predictedin vitroin vivo | FSW = 0.0200
| Unknown | ATGLR29 INTRACELLULAR LIGAND-GATED ION CHANNEL |
AT1G16470 | Predictedtwo hybrid | FSW = 0.0156
| Unknown | PAB1 (PROTEASOME SUBUNIT PAB1) ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT1G24706 | Predictedtwo hybrid | FSW = 0.0106
| Unknown | UNKNOWN PROTEIN |
AT3G07790 | Predictedtwo hybrid | FSW = 0.0143
| Unknown | DGCR14-RELATED |
AT1G77670 | Predictedtwo hybrid | FSW = 0.0389
| Unknown | AMINOTRANSFERASE CLASS I AND II FAMILY PROTEIN |
AT3G52760 | Predictedtwo hybrid | FSW = 0.0125
| Unknown | INTEGRAL MEMBRANE YIP1 FAMILY PROTEIN |
AT5G03760 | Predictedtwo hybrid | FSW = 0.0131
| Unknown | ATCSLA09 MANNAN SYNTHASE/ TRANSFERASE TRANSFERRING GLYCOSYL GROUPS |
AT5G58575 | Predictedtwo hybrid | FSW = 0.0339
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 19 PLANT STRUCTURES EXPRESSED DURING 11 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S SGF11 TRANSCRIPTIONAL REGULATION (INTERPROIPR013246) HAS 148 BLAST HITS TO 148 PROTEINS IN 67 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 94 FUNGI - 32 PLANTS - 16 VIRUSES - 0 OTHER EUKARYOTES - 6 (SOURCE NCBI BLINK) |
AT1G49760 | Predictedin vivoin vitro | FSW = 0.0084
| Unknown | PAB8 (POLY(A) BINDING PROTEIN 8) RNA BINDING / TRANSLATION INITIATION FACTOR |
AT3G12280 | PredictedAffinity Capture-WesternAffinity Capture-MS | FSW = 0.0126
| Unknown | RBR1 (RETINOBLASTOMA-RELATED 1) TRANSCRIPTION FACTOR BINDING |
AT5G11300 | PredictedAffinity Capture-MStwo hybridReconstituted Complex | FSW = 0.0101
| Unknown | CYC3B (MITOTIC-LIKE CYCLIN 3B FROM ARABIDOPSIS) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
AT5G43080 | PredictedAffinity Capture-MStwo hybridReconstituted Complex | FSW = 0.0222
| Unknown | CYCA31 (CYCLIN A31) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
AT5G58690 | Predictedin vivoin vitro | FSW = 0.0139
| Unknown | PHOSPHOINOSITIDE-SPECIFIC PHOSPHOLIPASE C FAMILY PROTEIN |
AT3G18370 | Predictedin vitro | FSW = 0.0247
| Unknown | ATSYTF |
AT4G34110 | Predictedin vivoin vitro | FSW = 0.0057
| Unknown | PAB2 (POLY(A) BINDING 2) RNA BINDING / TRANSLATION INITIATION FACTOR |
AT1G04730 | Predictedsynthetic growth defect | FSW = 0.0346
| Unknown | AAA-TYPE ATPASE FAMILY PROTEIN |
AT1G10930 | Predictedsynthetic growth defect | FSW = 0.0257
| Unknown | RECQ4A ATP BINDING / ATP-DEPENDENT HELICASE/ HELICASE/ NUCLEIC ACID BINDING |
AT1G31660 | PredictedAffinity Capture-MS | FSW = 0.0922
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 21 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S BYSTIN (INTERPROIPR007955) HAS 370 BLAST HITS TO 362 PROTEINS IN 156 SPECIES ARCHAE - 0 BACTERIA - 7 METAZOA - 139 FUNGI - 93 PLANTS - 32 VIRUSES - 0 OTHER EUKARYOTES - 99 (SOURCE NCBI BLINK) |
AT1G73570 | PredictedAffinity Capture-MS | FSW = 0.0326
| Unknown | SUPPRESSOR OF LIN-12-LIKE PROTEIN-RELATED / SEL-1 PROTEIN-RELATED |
AT1G80410 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0316
| Unknown | EMB2753 (EMBRYO DEFECTIVE 2753) BINDING |
AT2G44580 | Predictedsynthetic growth defect | FSW = 0.0233
| Unknown | PROTEIN BINDING / ZINC ION BINDING |
AT3G11450 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0677
| Unknown | DNAJ HEAT SHOCK N-TERMINAL DOMAIN-CONTAINING PROTEIN / CELL DIVISION PROTEIN-RELATED |
AT3G24080 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1092
| Unknown | KRR1 FAMILY PROTEIN |
AT3G26500 | PredictedAffinity Capture-Western | FSW = 0.0054
| Unknown | LEUCINE-RICH REPEAT FAMILY PROTEIN |
AT3G55280 | PredictedAffinity Capture-MS | FSW = 0.0580
| Unknown | RPL23AB (RIBOSOMAL PROTEIN L23AB) RNA BINDING / NUCLEOTIDE BINDING / STRUCTURAL CONSTITUENT OF RIBOSOME |
AT3G59410 | PredictedSynthetic RescuePhenotypic Suppression | FSW = 0.0119
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
AT3G60240 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0263
| Unknown | EIF4G (EUKARYOTIC TRANSLATION INITIATION FACTOR 4G) TRANSLATION INITIATION FACTOR |
AT5G08415 | PredictedAffinity Capture-MS | FSW = 0.0261
| Unknown | LIPOIC ACID SYNTHASE FAMILY PROTEIN |
AT5G08420 | PredictedAffinity Capture-MS | FSW = 0.0888
| Unknown | RNA BINDING |
AT5G11900 | PredictedAffinity Capture-MS | FSW = 0.0389
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1 FAMILY PROTEIN |
AT5G13780 | PredictedAffinity Capture-MS | FSW = 0.0340
| Unknown | GCN5-RELATED N-ACETYLTRANSFERASE PUTATIVE |
AT5G60040 | PredictedAffinity Capture-MS | FSW = 0.0123
| Unknown | NRPC1 DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ RIBONUCLEOSIDE BINDING / ZINC ION BINDING |
AT5G41190 | PredictedAffinity Capture-MS | FSW = 0.0358
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 21 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S NIN ONE BINDING (NOB1) ZN-RIBBON LIKE (INTERPROIPR014881) D-SITE 20S PRE-RRNA NUCLEASE (INTERPROIPR017117) HAS 855 BLAST HITS TO 653 PROTEINS IN 196 SPECIES ARCHAE - 53 BACTERIA - 16 METAZOA - 335 FUNGI - 168 PLANTS - 29 VIRUSES - 10 OTHER EUKARYOTES - 244 (SOURCE NCBI BLINK) |
AT3G01490 | Predictedtwo hybrid | FSW = 0.0286
| Unknown | PROTEIN KINASE PUTATIVE |
AT1G48630 | PredictedGene fusion methodPhylogenetic profile methodCo-expression | FSW = 0.3404
| Unknown | RACK1B_AT (RECEPTOR FOR ACTIVATED C KINASE 1 B) NUCLEOTIDE BINDING |
AT2G26060 | PredictedPhylogenetic profile method | FSW = 0.0309
| Unknown | EMB1345 (EMBRYO DEFECTIVE 1345) NUCLEOTIDE BINDING |
AT3G49660 | PredictedPhylogenetic profile method | FSW = 0.0568
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT4G02730 | PredictedPhylogenetic profile method | FSW = 0.0745
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT5G48180 | PredictedGene fusion method | FSW = 0.0753
| Unknown | NSP5 (NITRILE SPECIFIER PROTEIN 5) |
AT4G32950 | PredictedGene fusion method | FSW = 0.1205
| Unknown | PROTEIN PHOSPHATASE 2C PUTATIVE / PP2C PUTATIVE |
AT1G59960 | PredictedGene fusion method | FSW = 0.0372
| Unknown | ALDO/KETO REDUCTASE PUTATIVE |
AT3G59480 | PredictedGene fusion method | FSW = 0.0557
| Unknown | PFKB-TYPE CARBOHYDRATE KINASE FAMILY PROTEIN |
AT3G06060 | PredictedGene fusion method | FSW = 0.0429
| Unknown | SHORT-CHAIN DEHYDROGENASE/REDUCTASE (SDR) FAMILY PROTEIN |
AT1G21780 | PredictedGene fusion method | FSW = 0.0449
| Unknown | BTB/POZ DOMAIN-CONTAINING PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454