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AT1G10930 - ( RECQ4A ATP binding / ATP-dependent helicase/ helicase/ nucleic acid binding )

107 Proteins interacs with AT1G10930

Locus	Method	FSW	Cellular Compartment Classification (C3)	Description
AT1G14850	Predicted synthetic growth defect synthetic growth defect	FSW = 0.0073	Unknown	NUP155 NUCLEOCYTOPLASMIC TRANSPORTER
AT1G18080	Predicted synthetic growth defect	FSW = 0.0251	Unknown	ATARCA NUCLEOTIDE BINDING
AT2G36620	Predicted Synthetic Lethality	FSW = 0.0141	Unknown	RPL24A (RIBOSOMAL PROTEIN L24) STRUCTURAL CONSTITUENT OF RIBOSOME
AT5G43530	Predicted synthetic growth defect	FSW = 0.3089	Unknown	SNF2 DOMAIN-CONTAINING PROTEIN / HELICASE DOMAIN-CONTAINING PROTEIN / RING FINGER DOMAIN-CONTAINING PROTEIN
AT4G31210	Predicted pull down	FSW = 0.0212	Unknown	DNA TOPOISOMERASE FAMILY PROTEIN
AT4G14970	Predicted Affinity Capture-Western	FSW = 0.0202	Unknown	UNKNOWN PROTEIN
AT3G11630	Predicted synthetic growth defect synthetic growth defect Phenotypic Enhancement Phenotypic Enhancement	FSW = 0.1054	Unknown	2-CYS PEROXIREDOXIN CHLOROPLAST (BAS1)
AT2G28190	Predicted Synthetic Lethality Synthetic Lethality Synthetic Lethality interaction prediction	FSW = 0.1712	Unknown	CSD2 (COPPER/ZINC SUPEROXIDE DISMUTASE 2) SUPEROXIDE DISMUTASE
AT2G33450	Predicted pull down	FSW = 0.0163	Unknown	50S RIBOSOMAL PROTEIN L28 CHLOROPLAST (CL28)
AT3G54670	Predicted in vivo	FSW = 0.0086	Unknown	TTN8 (TITAN8) ATP BINDING / TRANSPORTER
AT1G12520	Predicted Synthetic Lethality synthetic growth defect	FSW = 0.1959	Unknown	ATCCS (COPPER CHAPERONE FOR SOD1) SUPEROXIDE DISMUTASE/ SUPEROXIDE DISMUTASE COPPER CHAPERONE
ATCG00330	Predicted pull down	FSW = 0.0050	Unknown	30S CHLOROPLAST RIBOSOMAL PROTEIN S14
AT2G14120	Predicted two hybrid two hybrid	FSW = 0.0017	Unknown	DYNAMIN-LIKE PROTEIN 2B (ADL2B)
AT1G54080	Predicted interaction prediction	FSW = 0.0093	Unknown	OLIGOURIDYLATE-BINDING PROTEIN PUTATIVE
AT1G64230	Predicted synthetic growth defect synthetic growth defect	FSW = 0.0275	Unknown	UBIQUITIN-CONJUGATING ENZYME PUTATIVE
AT3G18524	Predicted synthetic growth defect Phenotypic Enhancement Co-purification Phenotypic Suppression	FSW = 0.1775	Unknown	MSH2 (MUTS HOMOLOG 2) ATP BINDING / DAMAGED DNA BINDING / MISMATCHED DNA BINDING / PROTEIN BINDING
AT3G01310	Predicted synthetic growth defect	FSW = 0.0631	Unknown	ACID PHOSPHATASE/ OXIDOREDUCTASE/ TRANSITION METAL ION BINDING
AT1G16970	Predicted Synthetic Lethality Phenotypic Suppression Phenotypic Enhancement interologs mapping Phenotypic Suppression Phenotypic Suppression	FSW = 0.0903	Unknown	KU70 (ARABIDOPSIS THALIANA KU70 HOMOLOG) DOUBLE-STRANDED DNA BINDING / PROTEIN BINDING
AT4G16830	Predicted interologs mapping	FSW = 0.0269	Unknown	NUCLEAR RNA-BINDING PROTEIN (RGGA)
AT4G02070	Predicted Affinity Capture-MS Co-purification interaction prediction	FSW = 0.1355	Unknown	MSH6 (MUTS HOMOLOG 6) DAMAGED DNA BINDING
AT5G41580	Predicted Synthetic Lethality	FSW = 0.0649	Unknown	ZINC ION BINDING
AT3G44530	Predicted Phenotypic Enhancement	FSW = 0.1278	Unknown	HIRA (ARABIDOPSIS HOMOLOG OF HISTONE CHAPERONE HIRA) NUCLEOTIDE BINDING / PROTEIN BINDING
AT1G19120	Predicted synthetic growth defect synthetic growth defect	FSW = 0.1450	Unknown	SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE
AT3G13940	Predicted Synthetic Rescue	FSW = 0.0294	Unknown	DNA BINDING / DNA-DIRECTED RNA POLYMERASE
AT5G09860	Predicted Phenotypic Enhancement	FSW = 0.0706	Unknown	NUCLEAR MATRIX PROTEIN-RELATED
AT5G45400	Predicted in vitro Reconstituted Complex biochemical	FSW = 0.0385	Unknown	REPLICATION PROTEIN PUTATIVE
AT3G18130	Predicted synthetic growth defect	FSW = 0.0257	Unknown	RACK1C_AT (RECEPTOR FOR ACTIVATED C KINASE 1 C) NUCLEOTIDE BINDING
AT1G05120	Predicted two hybrid Phenotypic Enhancement Affinity Capture-Western interaction prediction Enriched domain pair	FSW = 0.0503	Unknown	SNF2 DOMAIN-CONTAINING PROTEIN / HELICASE DOMAIN-CONTAINING PROTEIN / RING FINGER DOMAIN-CONTAINING PROTEIN
AT5G22750	Predicted synthetic growth defect Enriched domain pair	FSW = 0.3318	Unknown	RAD5 ATP BINDING / ATP-DEPENDENT HELICASE/ DNA BINDING / HELICASE/ HYDROLASE ACTING ON ACID ANHYDRIDES IN PHOSPHORUS-CONTAINING ANHYDRIDES / NUCLEIC ACID BINDING / PROTEIN BINDING / ZINC ION BINDING
AT3G19210	Predicted synthetic growth defect Phenotypic Enhancement Phenotypic Enhancement Phenotypic Suppression Shared biological function Enriched domain pair	FSW = 0.2928	Unknown	ATRAD54 (ARABIDOPSIS HOMOLOG OF RAD54) ATP BINDING / DNA BINDING / HELICASE/ NUCLEIC ACID BINDING
AT1G07370	Predicted Phenotypic Enhancement	FSW = 0.2979	Unknown	PCNA1 (PROLIFERATING CELLULAR NUCLEAR ANTIGEN) DNA BINDING / DNA POLYMERASE PROCESSIVITY FACTOR/ PROTEIN BINDING
AT1G65470	Predicted Phenotypic Enhancement Phenotypic Enhancement	FSW = 0.1731	Unknown	FAS1 (FASCIATA 1) HISTONE BINDING
AT2G18760	Predicted synthetic growth defect Enriched domain pair	FSW = 0.0171	Unknown	CHR8 (CHROMATIN REMODELING 8) ATP BINDING / DNA BINDING / HELICASE/ NUCLEIC ACID BINDING
AT3G53020	Predicted Synthetic Lethality interaction prediction	FSW = 0.0090	Unknown	STV1 (SHORT VALVE1) STRUCTURAL CONSTITUENT OF RIBOSOME
AT1G01040	Predicted Phenotypic Enhancement	FSW = 0.0260	Unknown	DCL1 (DICER-LIKE 1) ATP-DEPENDENT HELICASE/ DOUBLE-STRANDED RNA BINDING / PROTEIN BINDING / RIBONUCLEASE III
AT1G35940	Predicted Synthetic Lethality Synthetic Lethality synthetic growth defect synthetic growth defect synthetic growth defect Synthetic Lethality	FSW = 0.2717	Unknown	DCL1 (DICER-LIKE 1) ATP-DEPENDENT HELICASE/ DOUBLE-STRANDED RNA BINDING / PROTEIN BINDING / RIBONUCLEASE III
AT4G11060	Predicted pull down	FSW = 0.0184	Unknown	MTSSB (MITOCHONDRIALLY TARGETED SINGLE-STRANDED DNA BINDING PROTEIN) SINGLE-STRANDED DNA BINDING
AT2G35630	Predicted two hybrid	FSW = 0.0147	Unknown	MOR1 (MICROTUBULE ORGANIZATION 1) MICROTUBULE BINDING
AT5G41150	Predicted synthetic growth defect Phenotypic Enhancement Phenotypic Suppression	FSW = 0.1843	Unknown	UVH1 (ULTRAVIOLET HYPERSENSITIVE 1) SINGLE-STRANDED DNA SPECIFIC ENDODEOXYRIBONUCLEASE
AT2G31970	Predicted Synthetic Rescue Synthetic Lethality synthetic growth defect synthetic growth defect synthetic growth defect Co-purification interaction prediction	FSW = 0.3655	Unknown	RAD50 ATP BINDING / NUCLEASE/ ZINC ION BINDING
AT5G66130	Predicted Phenotypic Enhancement Phenotypic Enhancement Phenotypic Enhancement Phenotypic Enhancement	FSW = 0.2786	Unknown	ATRAD17 (ARABIDOPSIS THALIANA RADIATION SENSITIVE)
AT5G57450	Predicted Synthetic Rescue Synthetic Rescue	FSW = 0.2659	Unknown	XRCC3 ATP BINDING / DAMAGED DNA BINDING / PROTEIN BINDING / SINGLE-STRANDED DNA BINDING
AT3G23890	Predicted two hybrid interaction prediction	FSW = 0.0477	Unknown	TOPII (TOPOISOMERASE II) ATP BINDING / DNA BINDING / DNA TOPOISOMERASE (ATP-HYDROLYZING)/ DNA TOPOISOMERASE/ DNA-DEPENDENT ATPASE
AT5G40820	Predicted Phenotypic Enhancement	FSW = 0.2185	Unknown	ATRAD3 BINDING / INOSITOL OR PHOSPHATIDYLINOSITOL KINASE/ PHOSPHOTRANSFERASE ALCOHOL GROUP AS ACCEPTOR / PROTEIN SERINE/THREONINE KINASE
AT1G07745	Predicted two hybrid Affinity Capture-Western Reconstituted Complex far western blotting	FSW = 0.0681	Unknown	RAD51D (ARABIDOPSIS HOMOLOG OF RAD51 D) ATP BINDING / DNA BINDING / DNA-DEPENDENT ATPASE
AT5G64520	Predicted Affinity Capture-Western Reconstituted Complex	FSW = 0.0321	Unknown	XRCC2
AT2G42120	Predicted Synthetic Lethality	FSW = 0.0515	Unknown	POLD2 (DNA POLYMERASE DELTA SMALL SUBUNIT) DNA BINDING / DNA-DIRECTED DNA POLYMERASE
AT5G54260	Predicted synthetic growth defect synthetic growth defect Phenotypic Enhancement Affinity Capture-Western Co-purification Phenotypic Enhancement	FSW = 0.3776	Unknown	MRE11 (MEIOTIC RECOMBINATION 11) ENDONUCLEASE/ EXONUCLEASE/ HYDROLASE/ MANGANESE ION BINDING / PROTEIN SERINE/THREONINE PHOSPHATASE
AT2G37560	Predicted Phenotypic Enhancement	FSW = 0.0698	Unknown	ORC2 (ORIGIN RECOGNITION COMPLEX SECOND LARGEST SUBUNIT 2) DNA REPLICATION ORIGIN BINDING / PROTEIN BINDING
AT3G28030	Predicted Phenotypic Enhancement	FSW = 0.0946	Unknown	UVH3 (ULTRAVIOLET HYPERSENSITIVE 3) DNA BINDING / CATALYTIC/ ENDONUCLEASE/ NUCLEASE/ SINGLE-STRANDED DNA BINDING
AT2G21790	Predicted Synthetic Lethality interaction prediction	FSW = 0.0461	Unknown	RNR1 (RIBONUCLEOTIDE REDUCTASE 1) ATP BINDING / PROTEIN BINDING / RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE
AT5G20850	Predicted Synthetic Rescue Synthetic Rescue Synthetic Rescue synthetic growth defect Synthetic Rescue Phenotypic Suppression Phenotypic Suppression Synthetic Rescue Phenotypic Suppression Phenotypic Enhancement Affinity Capture-Western two hybrid in vivo in vitro far western blotting Phenotypic Enhancement Phenotypic Suppression	FSW = 0.2562	Unknown	ATRAD51 ATP BINDING / DNA BINDING / DNA-DEPENDENT ATPASE/ DAMAGED DNA BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING / SEQUENCE-SPECIFIC DNA BINDING
AT1G08830	Predicted Synthetic Lethality Synthetic Lethality Synthetic Lethality	FSW = 0.1558	Unknown	CSD1 (COPPER/ZINC SUPEROXIDE DISMUTASE 1) SUPEROXIDE DISMUTASE
AT4G09140	Predicted two hybrid two hybrid two hybrid in vivo in vitro Affinity Capture-Western far western blotting Affinity Capture-Western far western blotting two hybrid Co-purification far western blotting Affinity Capture-Western Reconstituted Complex	FSW = 0.1148	Unknown	MLH1 (MUTL-HOMOLOGUE 1) PROTEIN BINDING BRIDGING
AT5G63920	Predicted interaction prediction two hybrid two hybrid Synthetic Rescue Synthetic Rescue Synthetic Rescue Synthetic Rescue Synthetic Rescue Synthetic Rescue Synthetic Rescue synthetic growth defect synthetic growth defect synthetic growth defect Reconstituted Complex Phenotypic Enhancement in vivo in vivo in vitro in vitro interologs mapping co-fractionation Co-fractionation Affinity Capture-Western Affinity Capture-Western Affinity Capture-Western Affinity Capture-Western two hybrid Phenotypic Enhancement synthetic growth defect Affinity Capture-Western two hybrid Affinity Capture-Western Affinity Capture-Western Affinity Capture-Western Synthetic Rescue Synthetic Rescue Synthetic Rescue Affinity Capture-Western far western blotting Affinity Capture-Western Colocalization far western blotting in vivo Affinity Capture-Western Affinity Capture-Western far western blotting Colocalization Reconstituted Complex co-fractionation Co-fractionation synthetic growth defect Synthetic Rescue Phenotypic Suppression Phenotypic Enhancement interologs mapping interaction prediction Enriched domain pair	FSW = 0.4450	Unknown	DNA TOPOISOMERASE III ALPHA PUTATIVE
AT4G27230	Predicted Affinity Capture-Western Colocalization	FSW = 0.0336	Unknown	HTA2 (HISTONE H2A) DNA BINDING
AT5G22010	Predicted Phenotypic Enhancement Co-purification	FSW = 0.0847	Unknown	ATRFC1 (REPLICATION FACTOR C 1) ATP BINDING / DNA BINDING / DNA CLAMP LOADER/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING
AT5G26680	Predicted interaction prediction Synthetic Lethality Synthetic Lethality Synthetic Lethality Synthetic Lethality Affinity Capture-Western Reconstituted Complex Phenotypic Suppression Phenotypic Enhancement	FSW = 0.3115	Unknown	ENDONUCLEASE PUTATIVE
AT5G27680	Predicted in vivo in vitro Affinity Capture-Western Reconstituted Complex Enriched domain pair	FSW = 0.0681	Unknown	RECQSIM (ARABIDOPSIS RECQ HELICASE SIM) ATP BINDING / ATP-DEPENDENT HELICASE/ HELICASE/ NUCLEIC ACID BINDING
AT1G04730	Predicted interaction prediction Synthetic Lethality synthetic growth defect	FSW = 0.2772	Unknown	AAA-TYPE ATPASE FAMILY PROTEIN
AT1G08840	Predicted Synthetic Lethality Phenotypic Enhancement Phenotypic Enhancement Synthetic Lethality	FSW = 0.2155	Unknown	EMB2411 (EMBRYO DEFECTIVE 2411) ATP BINDING / ATP-DEPENDENT DNA HELICASE/ DNA BINDING
AT1G18090	Predicted synthetic growth defect Phenotypic Enhancement synthetic growth defect Phenotypic Enhancement synthetic growth defect	FSW = 0.1905	Unknown	EXONUCLEASE PUTATIVE
AT1G24290	Predicted Synthetic Lethality synthetic growth defect synthetic growth defect Phenotypic Enhancement Phenotypic Enhancement interaction prediction	FSW = 0.1558	Unknown	AAA-TYPE ATPASE FAMILY PROTEIN
AT1G32130	Predicted Phenotypic Enhancement	FSW = 0.0230	Unknown	FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 25 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S TFIIS N-TERMINAL (INTERPROIPR017923) IWS1 C-TERMINAL (INTERPROIPR008654) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS IWS1 C-TERMINUS FAMILY PROTEIN (TAIRAT4G190001) HAS 907 BLAST HITS TO 871 PROTEINS IN 182 SPECIES ARCHAE - 4 BACTERIA - 14 METAZOA - 417 FUNGI - 195 PLANTS - 42 VIRUSES - 8 OTHER EUKARYOTES - 227 (SOURCE NCBI BLINK)
AT1G55915	Predicted Synthetic Lethality Synthetic Lethality Synthetic Lethality Synthetic Lethality Phenotypic Enhancement interaction prediction	FSW = 0.0788	Unknown	ZINC ION BINDING
AT1G66740	Predicted Synthetic Lethality synthetic growth defect synthetic growth defect Phenotypic Enhancement Phenotypic Enhancement Phenotypic Enhancement interaction prediction	FSW = 0.2247	Unknown	SGA2
AT1G67190	Predicted Synthetic Lethality synthetic growth defect synthetic growth defect	FSW = 0.2138	Unknown	F-BOX FAMILY PROTEIN
AT2G44580	Predicted Synthetic Lethality synthetic growth defect interaction prediction	FSW = 0.2603	Unknown	PROTEIN BINDING / ZINC ION BINDING
AT3G02820	Predicted interaction prediction Synthetic Lethality Synthetic Lethality synthetic growth defect synthetic growth defect Phenotypic Enhancement	FSW = 0.2174	Unknown	ZINC KNUCKLE (CCHC-TYPE) FAMILY PROTEIN
AT3G20475	Predicted Phenotypic Suppression	FSW = 0.0662	Unknown	MSH5 (MUTS-HOMOLOGUE 5) ATP BINDING / DAMAGED DNA BINDING / MISMATCHED DNA BINDING
AT3G27730	Predicted Phenotypic Suppression	FSW = 0.0094	Unknown	RCK (ROCK-N-ROLLERS) ATP BINDING / ATP-DEPENDENT HELICASE/ DNA HELICASE
AT3G42660	Predicted Synthetic Lethality synthetic growth defect synthetic growth defect interaction prediction	FSW = 0.2877	Unknown	NUCLEOTIDE BINDING
AT3G58560	Predicted synthetic growth defect	FSW = 0.1479	Unknown	ENDONUCLEASE/EXONUCLEASE/PHOSPHATASE FAMILY PROTEIN
AT4G16970	Predicted Synthetic Lethality	FSW = 0.0716	Unknown	ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
AT4G25120	Predicted interaction prediction two hybrid Synthetic Lethality Synthetic Lethality Synthetic Lethality Synthetic Lethality Synthetic Lethality Synthetic Lethality Synthetic Lethality Synthetic Lethality Synthetic Lethality Synthetic Lethality Synthetic Lethality synthetic growth defect synthetic growth defect Phenotypic Enhancement Phenotypic Enhancement interologs mapping interologs mapping Affinity Capture-Western Synthetic Lethality Phenotypic Enhancement Phenotypic Enhancement Synthetic Lethality	FSW = 0.3376	Unknown	ATP BINDING / ATP-DEPENDENT DNA HELICASE/ DNA BINDING / HYDROLASE
AT4G30870	Predicted Synthetic Lethality Synthetic Lethality Synthetic Lethality Synthetic Lethality Synthetic Lethality Synthetic Lethality Synthetic Lethality Synthetic Lethality synthetic growth defect synthetic growth defect Phenotypic Enhancement Phenotypic Enhancement	FSW = 0.2514	Unknown	MUS81 (MMS AND UV SENSITIVE 81) ENDONUCLEASE/ NUCLEIC ACID BINDING
AT4G35520	Predicted Affinity Capture-Western Phenotypic Suppression interaction prediction	FSW = 0.0163	Unknown	MLH3 (MUTL PROTEIN HOMOLOG 3) ATP BINDING / MISMATCHED DNA BINDING
AT5G09740	Predicted synthetic growth defect	FSW = 0.1405	Unknown	HAM2 (HISTONE ACETYLTRANSFERASE OF THE MYST FAMILY 2) H3/H4 HISTONE ACETYLTRANSFERASE/ HISTONE ACETYLTRANSFERASE/ NUCLEIC ACID BINDING / ZINC ION BINDING
AT5G10960	Predicted synthetic growth defect synthetic growth defect	FSW = 0.1313	Unknown	CCR4-NOT TRANSCRIPTION COMPLEX PROTEIN PUTATIVE
AT5G13780	Predicted synthetic growth defect	FSW = 0.1624	Unknown	GCN5-RELATED N-ACETYLTRANSFERASE PUTATIVE
AT5G16850	Predicted Synthetic Lethality Phenotypic Enhancement Phenotypic Enhancement	FSW = 0.0588	Unknown	ATTERT (TELOMERASE REVERSE TRANSCRIPTASE) TELOMERASE/ TELOMERIC TEMPLATE RNA REVERSE TRANSCRIPTASE
AT5G55310	Predicted synthetic growth defect synthetic growth defect Synthetic Lethality synthetic growth defect Synthetic Lethality Synthetic Lethality synthetic growth defect Phenotypic Enhancement	FSW = 0.1101	Unknown	TOP1BETA (DNA TOPOISOMERASE 1 BETA) DNA TOPOISOMERASE TYPE I
AT5G59440	Predicted Synthetic Lethality interaction prediction	FSW = 0.0341	Unknown	ZEU1 (ZEUS1) ATP BINDING / THYMIDYLATE KINASE
AT5G61460	Predicted synthetic growth defect	FSW = 0.0442	Unknown	MIM (HYPERSENSITIVE TO MMS IRRADIATION AND MMC) ATP BINDING
AT1G51310	Predicted Phenotypic Suppression	FSW = 0.0308	Unknown	TRNA (5-METHYLAMINOMETHYL-2-THIOURIDYLATE)-METHYLTRANSFERASE
AT1G73570	Predicted synthetic growth defect	FSW = 0.0159	Unknown	SUPPRESSOR OF LIN-12-LIKE PROTEIN-RELATED / SEL-1 PROTEIN-RELATED
AT2G25100	Predicted synthetic growth defect synthetic growth defect	FSW = 0.0690	Unknown	RIBONUCLEASE HII FAMILY PROTEIN
AT3G13170	Predicted Phenotypic Suppression	FSW = 0.0421	Unknown	ATSPO11-1 ATP BINDING / DNA BINDING / DNA TOPOISOMERASE (ATP-HYDROLYZING)/ CATALYTIC
AT3G14100	Predicted Synthetic Lethality	FSW = 0.0216	Unknown	OLIGOURIDYLATE-BINDING PROTEIN PUTATIVE
AT3G22590	Predicted Phenotypic Enhancement	FSW = 0.0800	Unknown	RNA POL II ACCESSORY FACTOR CDC73 FAMILY PROTEIN
AT4G33240	Predicted synthetic growth defect	FSW = 0.0626	Unknown	1-PHOSPHATIDYLINOSITOL-4-PHOSPHATE 5-KINASE/ ATP BINDING / PHOSPHATIDYLINOSITOL PHOSPHATE KINASE/ PROTEIN BINDING / ZINC ION BINDING
AT5G10400	Predicted Phenotypic Enhancement	FSW = 0.0588	Unknown	HISTONE H3
AT5G15070	Predicted synthetic growth defect	FSW = 0.0145	Unknown	ACID PHOSPHATASE/ OXIDOREDUCTASE/ TRANSITION METAL ION BINDING
AT5G41700	Predicted synthetic growth defect synthetic growth defect	FSW = 0.0485	Unknown	UBC8 (UBIQUITIN CONJUGATING ENZYME 8) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE
AT5G41880	Predicted Phenotypic Enhancement	FSW = 0.1094	Unknown	POLA3 DNA PRIMASE
AT5G43500	Predicted synthetic growth defect	FSW = 0.2021	Unknown	ATARP9 (ACTIN-RELATED PROTEIN 9) DNA BINDING / PROTEIN BINDING
AT3G49660	Predicted Affinity Capture-MS interaction prediction	FSW = 0.0502	Unknown	TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT5G07660	Predicted synthetic growth defect	FSW = 0.0199	Unknown	STRUCTURAL MAINTENANCE OF CHROMOSOMES (SMC) FAMILY PROTEIN
AT5G55300	Predicted interaction prediction Synthetic Lethality Synthetic Lethality Synthetic Lethality synthetic growth defect synthetic growth defect synthetic growth defect Synthetic Rescue	FSW = 0.0941	Unknown	TOP1ALPHA (DNA TOPOISOMERASE I ALPHA) DNA TOPOISOMERASE TYPE I
AT1G15920	Predicted synthetic growth defect synthetic growth defect	FSW = 0.1635	Unknown	CCR4-NOT TRANSCRIPTION COMPLEX PROTEIN PUTATIVE
AT1G29630	Predicted synthetic growth defect synthetic growth defect	FSW = 0.0901	Unknown	NUCLEASE
AT5G40490	Predicted synthetic growth defect synthetic growth defect	FSW = 0.1214	Unknown	RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN
AT2G23420	Predicted synthetic growth defect	FSW = 0.1623	Unknown	NAPRT2 (NICOTINATE PHOSPHORIBOSYLTRANSFERASE 2) NICOTINATE PHOSPHORIBOSYLTRANSFERASE
AT1G71010	Predicted synthetic growth defect	FSW = 0.0220	Unknown	PHOSPHATIDYLINOSITOL-4-PHOSPHATE 5-KINASE FAMILY PROTEIN
AT1G17370	Predicted Synthetic Lethality	FSW = 0.0120	Unknown	UBP1B (OLIGOURIDYLATE BINDING PROTEIN 1B) MRNA 3-UTR BINDING
AT3G07120	Predicted Synthetic Lethality Synthetic Lethality Synthetic Lethality	FSW = 0.2482	Unknown	ZINC FINGER (C3HC4-TYPE RING FINGER) FAMILY PROTEIN
AT5G39770	Predicted interaction prediction	FSW = 0.0285	Unknown	DNA BINDING / ENDONUCLEASE/ NUCLEASE/ NUCLEIC ACID BINDING / PROTEIN BINDING

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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from

Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment

Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment

Class C: Same as Class A but the PPI is predicted

Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB

Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454

Welcome to AtPIN

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AT1G10930 - ( RECQ4A ATP binding / ATP-dependent helicase/ helicase/ nucleic acid binding )

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