Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G09740 - ( HAM2 (histone acetyltransferase of the MYST family 2) H3/H4 histone acetyltransferase/ histone acetyltransferase/ nucleic acid binding / zinc ion binding )
91 Proteins interacs with AT5G09740Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT1G49240 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternCo-purification | FSW = 0.0382
| Unknown | ACT8 (ACTIN 8) COPPER ION BINDING / STRUCTURAL CONSTITUENT OF CYTOSKELETON |
AT1G07660 | Predictedbiochemicalbiochemical | FSW = 0.0560
| Unknown | HISTONE H4 |
AT1G31780 | PredictedSynthetic Lethality | FSW = 0.0171
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 24 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S CONSERVED OLIGOMERIC COMPLEX COG6 (INTERPROIPR010490) HAS 281 BLAST HITS TO 279 PROTEINS IN 131 SPECIES ARCHAE - 0 BACTERIA - 2 METAZOA - 132 FUNGI - 106 PLANTS - 21 VIRUSES - 0 OTHER EUKARYOTES - 20 (SOURCE NCBI BLINK) |
AT2G45200 | PredictedSynthetic Lethality | FSW = 0.0124
| Unknown | GOS12 (GOLGI SNARE 12) SNARE BINDING |
AT1G79590 | Predictedsynthetic growth defect | FSW = 0.0081
| Unknown | SYP52 (SYNTAXIN OF PLANTS 52) SNAP RECEPTOR |
AT3G02520 | PredictedAffinity Capture-WesternSynthetic Lethalitysynthetic growth defect | FSW = 0.0841
| Unknown | GRF7 (GENERAL REGULATORY FACTOR 7) PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING |
AT5G59690 | PredictedbiochemicalbiochemicalColocalization | FSW = 0.1252
| Unknown | HISTONE H4 |
AT5G43530 | Predictedsynthetic growth defect | FSW = 0.1908
| Unknown | SNF2 DOMAIN-CONTAINING PROTEIN / HELICASE DOMAIN-CONTAINING PROTEIN / RING FINGER DOMAIN-CONTAINING PROTEIN |
AT2G44050 | Predictedsynthetic growth defect | FSW = 0.0444
| Unknown | COS1 (COI1 SUPPRESSOR1) 67-DIMETHYL-8-RIBITYLLUMAZINE SYNTHASE |
AT5G38480 | PredictedAffinity Capture-WesternSynthetic Lethality | FSW = 0.0305
| Unknown | GRF3 (GENERAL REGULATORY FACTOR 3) ATP BINDING / PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING |
AT3G12110 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternCo-purificationinteraction prediction | FSW = 0.0873
| Unknown | ACT11 (ACTIN-11) STRUCTURAL CONSTITUENT OF CYTOSKELETON |
AT5G45970 | PredictedPhenotypic Enhancement | FSW = 0.0145
| Unknown | ARAC2 (ARABIDOPSIS RAC-LIKE 2) GTP BINDING |
AT2G44680 | Predictedsynthetic growth defect | FSW = 0.1379
| Unknown | CKB4 (CASEIN KINASE II BETA SUBUNIT 4) PROTEIN SERINE/THREONINE KINASE |
AT5G67270 | Predictedsynthetic growth defect | FSW = 0.2625
| Unknown | ATEB1C (MICROTUBULE END BINDING PROTEIN 1) MICROTUBULE BINDING |
AT1G21700 | PredictedSynthetic Lethality | FSW = 0.0226
| Unknown | ATSWI3C (SWITCH/SUCROSE NONFERMENTING 3C) DNA BINDING |
AT1G17790 | PredictedSynthetic Lethality | FSW = 0.1861
| Unknown | DNA-BINDING BROMODOMAIN-CONTAINING PROTEIN |
AT3G54610 | Predictedsynthetic growth defect | FSW = 0.1249
| Unknown | GCN5 DNA BINDING / H3 HISTONE ACETYLTRANSFERASE/ HISTONE ACETYLTRANSFERASE |
AT3G12810 | PredictedAffinity Capture-Westernsynthetic growth defect | FSW = 0.2721
| Unknown | PIE1 (PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1) ATP BINDING / DNA BINDING / HELICASE/ NUCLEIC ACID BINDING |
AT3G44530 | Predictedsynthetic growth defect | FSW = 0.2526
| Unknown | HIRA (ARABIDOPSIS HOMOLOG OF HISTONE CHAPERONE HIRA) NUCLEOTIDE BINDING / PROTEIN BINDING |
AT1G19120 | Predictedsynthetic growth defect | FSW = 0.1833
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE |
AT5G22220 | PredictedPhenotypic Enhancement | FSW = 0.0117
| Unknown | E2F1 DNA BINDING / PROTEIN BINDING / TRANSCRIPTION FACTOR |
AT4G10710 | Predictedsynthetic growth defect | FSW = 0.1679
| Unknown | SPT16 (GLOBAL TRANSCRIPTION FACTOR C) |
AT4G10670 | Predictedsynthetic growth defect | FSW = 0.1335
| Unknown | GTC2 |
AT2G28910 | Predictedtwo hybridtwo hybrid | FSW = 0.0068
| Unknown | CXIP4 (CAX INTERACTING PROTEIN 4) NUCLEIC ACID BINDING / ZINC ION BINDING |
AT1G18450 | Predictedco-fractionationCo-fractionation | FSW = 0.0711
| Unknown | ATARP4 STRUCTURAL CONSTITUENT OF CYTOSKELETON |
AT1G02740 | PredictedReconstituted ComplexCo-purificationCo-purificationAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSsynthetic growth defect | FSW = 0.1708
| Unknown | CHROMATIN BINDING |
AT2G47210 | PredictedCo-purificationAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-Western | FSW = 0.1541
| Unknown | MYB FAMILY TRANSCRIPTION FACTOR |
AT3G19210 | Predictedsynthetic growth defect | FSW = 0.1942
| Unknown | ATRAD54 (ARABIDOPSIS HOMOLOG OF RAD54) ATP BINDING / DNA BINDING / HELICASE/ NUCLEIC ACID BINDING |
AT1G06230 | PredictedSynthetic Lethality | FSW = 0.1610
| Unknown | GTE4 (GLOBAL TRANSCRIPTION FACTOR GROUP E 4) DNA BINDING |
AT2G44950 | Predictedsynthetic growth defect | FSW = 0.2029
| Unknown | HUB1 (HISTONE MONO-UBIQUITINATION 1) PROTEIN BINDING / PROTEIN HOMODIMERIZATION/ UBIQUITIN-PROTEIN LIGASE/ ZINC ION BINDING |
AT2G31970 | Predictedsynthetic growth defect | FSW = 0.1528
| Unknown | RAD50 ATP BINDING / NUCLEASE/ ZINC ION BINDING |
AT5G57450 | Predictedsynthetic growth defect | FSW = 0.1536
| Unknown | XRCC3 ATP BINDING / DAMAGED DNA BINDING / PROTEIN BINDING / SINGLE-STRANDED DNA BINDING |
AT5G03730 | Predictedtwo hybridPhenotypic Enhancementtwo hybrid | FSW = 0.0076
| Unknown | CTR1 (CONSTITUTIVE TRIPLE RESPONSE 1) KINASE/ PROTEIN BINDING / PROTEIN SERINE/THREONINE KINASE/ PROTEIN SERINE/THREONINE/TYROSINE KINASE |
AT3G25980 | Predictedsynthetic growth defect | FSW = 0.0593
| Unknown | MITOTIC SPINDLE CHECKPOINT PROTEIN PUTATIVE (MAD2) |
AT2G29900 | PredictedPhenotypic Enhancement | FSW = 0.0159
| Unknown | PRESENILIN FAMILY PROTEIN |
AT5G54260 | Predictedsynthetic growth defect | FSW = 0.1649
| Unknown | MRE11 (MEIOTIC RECOMBINATION 11) ENDONUCLEASE/ EXONUCLEASE/ HYDROLASE/ MANGANESE ION BINDING / PROTEIN SERINE/THREONINE PHOSPHATASE |
AT5G20850 | Predictedsynthetic growth defect | FSW = 0.0899
| Unknown | ATRAD51 ATP BINDING / DNA BINDING / DNA-DEPENDENT ATPASE/ DAMAGED DNA BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING / SEQUENCE-SPECIFIC DNA BINDING |
AT5G61970 | Predictedtwo hybridtwo hybrid | FSW = 0.0085
| Unknown | SIGNAL RECOGNITION PARTICLE-RELATED / SRP-RELATED |
AT5G49310 | Predictedtwo hybrid | FSW = 0.0079
| Unknown | IMPA-5 (IMPORTIN ALPHA ISOFORM 5) BINDING / PROTEIN TRANSPORTER |
AT4G37280 | PredictedAffinity Capture-WesternCo-purificationinteraction prediction | FSW = 0.0565
| Unknown | MRG FAMILY PROTEIN |
AT5G61070 | PredictedAffinity Capture-Westerntwo hybrid | FSW = 0.0199
| Unknown | HDA18 H3/H4 HISTONE ACETYLTRANSFERASE/ HISTONE DEACETYLASE |
AT1G04020 | Predictedsynthetic growth defect | FSW = 0.2203
| Unknown | BARD1 (BREAST CANCER ASSOCIATED RING 1) DNA BINDING / TRANSCRIPTION COACTIVATOR |
AT1G04730 | Predictedsynthetic growth defect | FSW = 0.2415
| Unknown | AAA-TYPE ATPASE FAMILY PROTEIN |
AT1G05910 | Predictedsynthetic growth defect | FSW = 0.1142
| Unknown | CELL DIVISION CYCLE PROTEIN 48-RELATED / CDC48-RELATED |
AT1G08880 | PredictedbiochemicalAffinity Capture-MS | FSW = 0.0731
| Unknown | H2AXA DNA BINDING |
AT1G10930 | Predictedsynthetic growth defect | FSW = 0.1405
| Unknown | RECQ4A ATP BINDING / ATP-DEPENDENT HELICASE/ HELICASE/ NUCLEIC ACID BINDING |
AT1G13870 | Predictedsynthetic growth defect | FSW = 0.0392
| Unknown | DRL1 (DEFORMED ROOTS AND LEAVES 1) CALMODULIN BINDING / PURINE NUCLEOTIDE BINDING |
AT1G17140 | PredictedSynthetic Lethality | FSW = 0.0215
| Unknown | TROPOMYOSIN-RELATED |
AT1G26450 | Predictedsynthetic growth defect | FSW = 0.0199
| Unknown | BETA-13-GLUCANASE-RELATED |
AT1G29990 | PredictedSynthetic Lethality | FSW = 0.1339
| Unknown | PDF6 (PREFOLDIN 6) UNFOLDED PROTEIN BINDING |
AT1G34150 | Predictedsynthetic growth defect | FSW = 0.0665
| Unknown | TRNA PSEUDOURIDINE SYNTHASE FAMILY PROTEIN |
AT1G52740 | Predictedbiochemicalsynthetic growth defect | FSW = 0.3511
| Unknown | HTA9 (HISTONE H2A PROTEIN 9) DNA BINDING |
AT1G54390 | PredictedCo-purificationAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.2283
| Unknown | PHD FINGER PROTEIN-RELATED |
AT1G61040 | Predictedsynthetic growth defect | FSW = 0.1602
| Unknown | VIP5 (VERNALIZATION INDEPENDENCE 5) DNA BINDING |
AT1G66740 | Predictedsynthetic growth defect | FSW = 0.2341
| Unknown | SGA2 |
AT1G67190 | Predictedsynthetic growth defect | FSW = 0.2788
| Unknown | F-BOX FAMILY PROTEIN |
AT1G80410 | Predictedsynthetic growth defect | FSW = 0.1545
| Unknown | EMB2753 (EMBRYO DEFECTIVE 2753) BINDING |
AT2G02760 | PredictedSynthetic Lethality | FSW = 0.1630
| Unknown | ATUBC2 (UBIQUITING-CONJUGATING ENZYME 2) UBIQUITIN-PROTEIN LIGASE |
AT2G44150 | PredictedSynthetic Lethality | FSW = 0.1082
| Unknown | ASHH3 (HISTONE-LYSINE N-METHYLTRANSFERASE ASHH3) HISTONE-LYSINE N-METHYLTRANSFERASE |
AT2G44580 | Predictedsynthetic growth defect | FSW = 0.2596
| Unknown | PROTEIN BINDING / ZINC ION BINDING |
AT3G02820 | Predictedsynthetic growth defect | FSW = 0.1742
| Unknown | ZINC KNUCKLE (CCHC-TYPE) FAMILY PROTEIN |
AT3G14100 | Predictedsynthetic growth defect | FSW = 0.0167
| Unknown | OLIGOURIDYLATE-BINDING PROTEIN PUTATIVE |
AT3G21060 | Predictedsynthetic growth defect | FSW = 0.1128
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT3G26020 | Predictedsynthetic growth defect | FSW = 0.0665
| Unknown | SERINE/THREONINE PROTEIN PHOSPHATASE 2A (PP2A) REGULATORY SUBUNIT B PUTATIVE |
AT3G42660 | Predictedsynthetic growth defect | FSW = 0.2609
| Unknown | NUCLEOTIDE BINDING |
AT3G46320 | PredictedbiochemicalbiochemicalColocalization | FSW = 0.0858
| Unknown | HISTONE H4 |
AT3G54380 | Predictedsynthetic growth defect | FSW = 0.0862
| Unknown | SAC3/GANP FAMILY PROTEIN |
AT3G58560 | Predictedsynthetic growth defect | FSW = 0.1584
| Unknown | ENDONUCLEASE/EXONUCLEASE/PHOSPHATASE FAMILY PROTEIN |
AT4G04880 | Predictedsynthetic growth defect | FSW = 0.0113
| Unknown | ADENOSINE/AMP DEAMINASE FAMILY PROTEIN |
AT4G16700 | Predictedsynthetic growth defect | FSW = 0.0165
| Unknown | PSD1 (PHOSPHATIDYLSERINE DECARBOXYLASE 1) PHOSPHATIDYLSERINE DECARBOXYLASE |
AT4G25120 | Predictedsynthetic growth defect | FSW = 0.1315
| Unknown | ATP BINDING / ATP-DEPENDENT DNA HELICASE/ DNA BINDING / HYDROLASE |
AT4G36080 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSCo-purificationCo-purificationAffinity Capture-MSAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-MSAffinity Capture-WesternCo-purification | FSW = 0.1752
| Unknown | FAT DOMAIN-CONTAINING PROTEIN / PHOSPHATIDYLINOSITOL 3- AND 4-KINASE FAMILY PROTEIN |
AT5G08415 | Predictedsynthetic growth defect | FSW = 0.0106
| Unknown | LIPOIC ACID SYNTHASE FAMILY PROTEIN |
AT2G28360 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0234
| Unknown | INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN ENDOMEMBRANE SYSTEM EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S SIT4 PHOSPHATASE-ASSOCIATED PROTEIN (INTERPROIPR007587) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS SIT4 PHOSPHATASE-ASSOCIATED FAMILY PROTEIN (TAIRAT1G079901) HAS 1431 BLAST HITS TO 1107 PROTEINS IN 182 SPECIES ARCHAE - 2 BACTERIA - 108 METAZOA - 552 FUNGI - 305 PLANTS - 89 VIRUSES - 18 OTHER EUKARYOTES - 357 (SOURCE NCBI BLINK) |
AT4G31120 | Predictedsynthetic growth defect | FSW = 0.0267
| Unknown | SKB1 (SHK1 BINDING PROTEIN 1) PROTEIN METHYLTRANSFERASE |
AT5G45600 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternAffinity Capture-MSAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternSynthetic Lethalityinteraction prediction | FSW = 0.4284
| Unknown | GAS41 PROTEIN BINDING |
AT5G10260 | Predictedsynthetic growth defect | FSW = 0.1319
| Unknown | ATRABH1E (ARABIDOPSIS RAB GTPASE HOMOLOG H1E) GTP BINDING |
AT5G10390 | Predictedbiochemical | FSW = 0.1937
| Unknown | HISTONE H3 |
AT5G10400 | Predictedbiochemical | FSW = 0.1752
| Unknown | HISTONE H3 |
AT5G10960 | Predictedsynthetic growth defect | FSW = 0.1709
| Unknown | CCR4-NOT TRANSCRIPTION COMPLEX PROTEIN PUTATIVE |
AT5G13780 | Predictedsynthetic growth defect | FSW = 0.1910
| Unknown | GCN5-RELATED N-ACETYLTRANSFERASE PUTATIVE |
AT5G23290 | Predictedsynthetic growth defect | FSW = 0.1613
| Unknown | PDF5 (PREFOLDIN 5) UNFOLDED PROTEIN BINDING |
AT5G26680 | Predictedsynthetic growth defect | FSW = 0.2189
| Unknown | ENDONUCLEASE PUTATIVE |
AT5G53770 | Predictedsynthetic growth defect | FSW = 0.1311
| Unknown | NUCLEOTIDYLTRANSFERASE FAMILY PROTEIN |
AT5G61150 | Predictedsynthetic growth defect | FSW = 0.1361
| Unknown | VIP4 (VERNALIZATION INDEPENDENCE 4) PROTEIN BINDING |
AT5G67320 | Predictedsynthetic growth defect | FSW = 0.0881
| Unknown | HOS15 (HIGH EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 15) |
AT2G18000 | PredictedAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternSynthetic Lethality | FSW = 0.3159
| Unknown | TAF14 (TBP-ASSOCIATED FACTOR 14) |
AT2G17930 | PredictedCo-purificationCo-purificationAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternCo-purificationinteraction prediction | FSW = 0.1431
| Unknown | BINDING / INOSITOL OR PHOSPHATIDYLINOSITOL KINASE/ PHOSPHOTRANSFERASE ALCOHOL GROUP AS ACCEPTOR |
AT1G07990 | PredictedAffinity Capture-MS | FSW = 0.0180
| Unknown | SIT4 PHOSPHATASE-ASSOCIATED FAMILY PROTEIN |
AT1G09200 | Predictedbiochemical | FSW = 0.0839
| Unknown | HISTONE H3 |
AT5G64610 | PredictedGene fusion methodGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.0426
| Unknown | HAM1 (HISTONE ACETYLTRANSFERASE OF THE MYST FAMILY 1) H3/H4 HISTONE ACETYLTRANSFERASE/ HISTONE ACETYLTRANSFERASE/ NUCLEIC ACID BINDING / ZINC ION BINDING |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454