Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G26020 - ( serine/threonine protein phosphatase 2A (PP2A) regulatory subunit B putative )
48 Proteins interacs with AT3G26020Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT1G13440 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0256
| Unknown | GAPC2 (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C2) NAD OR NADH BINDING / BINDING / CATALYTIC/ GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE (PHOSPHORYLATING)/ GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE |
AT3G26030 | PredictedGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.3103
| Unknown | ATB DELTA PROTEIN PHOSPHATASE TYPE 2A REGULATOR |
AT2G28190 | PredictedPhenotypic Enhancement | FSW = 0.0904
| Unknown | CSD2 (COPPER/ZINC SUPEROXIDE DISMUTASE 2) SUPEROXIDE DISMUTASE |
AT1G12520 | PredictedPhenotypic Enhancement | FSW = 0.1211
| Unknown | ATCCS (COPPER CHAPERONE FOR SOD1) SUPEROXIDE DISMUTASE/ SUPEROXIDE DISMUTASE COPPER CHAPERONE |
AT1G71440 | PredictedPhenotypic Enhancement | FSW = 0.2659
| Unknown | PFI (PFIFFERLING) |
AT3G48750 | Predictedbiochemicalinteraction prediction | FSW = 0.0152
| Unknown | CDC2 (CELL DIVISION CONTROL 2) CYCLIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN BINDING / PROTEIN KINASE |
AT5G12250 | PredictedSynthetic Rescue | FSW = 0.0556
| Unknown | TUB6 (BETA-6 TUBULIN) STRUCTURAL CONSTITUENT OF CYTOSKELETON |
AT2G14120 | PredictedAffinity Capture-MS | FSW = 0.0208
| Unknown | DYNAMIN-LIKE PROTEIN 2B (ADL2B) |
AT3G25800 | Predictedinteraction predictionAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinterologs mapping | FSW = 0.0422
| Unknown | PP2AA2 (PROTEIN PHOSPHATASE 2A SUBUNIT A2) PROTEIN PHOSPHATASE TYPE 2A REGULATOR |
AT2G42500 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.0476
| Unknown | PP2A-4 HYDROLASE/ PROTEIN SERINE/THREONINE PHOSPHATASE |
AT1G79930 | PredictedAffinity Capture-MS | FSW = 0.0337
| Unknown | HSP91 ATP BINDING |
AT5G67270 | PredictedPhenotypic Enhancement | FSW = 0.1895
| Unknown | ATEB1C (MICROTUBULE END BINDING PROTEIN 1) MICROTUBULE BINDING |
AT2G24490 | PredictedPhenotypic Enhancement | FSW = 0.0658
| Unknown | RPA2 (REPLICON PROTEIN A2) PROTEIN BINDING |
AT2G35670 | PredictedAffinity Capture-MS | FSW = 0.2348
| Unknown | FIS2 (FERTILIZATION INDEPENDENT SEED 2) TRANSCRIPTION FACTOR |
AT2G13370 | PredictedPhenotypic Enhancement | FSW = 0.0927
| Unknown | CHR5 (CHROMATIN REMODELING 5) ATP BINDING / DNA BINDING / CHROMATIN BINDING / HELICASE/ NUCLEIC ACID BINDING |
AT3G22830 | Predictedinterologs mapping | FSW = 0.0975
| Unknown | AT-HSFA6B DNA BINDING / TRANSCRIPTION FACTOR |
AT2G44950 | PredictedPhenotypic Enhancement | FSW = 0.0802
| Unknown | HUB1 (HISTONE MONO-UBIQUITINATION 1) PROTEIN BINDING / PROTEIN HOMODIMERIZATION/ UBIQUITIN-PROTEIN LIGASE/ ZINC ION BINDING |
AT5G26710 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0242
| Unknown | GLUTAMATE-TRNA LIGASE PUTATIVE / GLUTAMYL-TRNA SYNTHETASE PUTATUVE / GLURS PUTATIVE |
AT2G36200 | Predictedinteraction prediction | FSW = 0.1898
| Unknown | KINESIN MOTOR PROTEIN-RELATED |
AT2G42810 | PredictedAffinity Capture-MS | FSW = 0.0315
| Unknown | PP52 (PROTEIN PHOSPHATASE 52) PHOSPHOPROTEIN PHOSPHATASE/ PROTEIN BINDING / PROTEIN SERINE/THREONINE PHOSPHATASE |
AT1G04730 | PredictedPhenotypic Enhancement | FSW = 0.1623
| Unknown | AAA-TYPE ATPASE FAMILY PROTEIN |
AT1G08780 | PredictedPhenotypic Enhancement | FSW = 0.1759
| Unknown | AIP3 (ABI3-INTERACTING PROTEIN 3) UNFOLDED PROTEIN BINDING |
AT1G09020 | PredictedPhenotypic Suppression | FSW = 0.0180
| Unknown | SNF4 (HOMOLOG OF YEAST SUCROSE NONFERMENTING 4) PROTEIN KINASE ACTIVATOR |
AT1G29990 | PredictedPhenotypic Enhancement | FSW = 0.1532
| Unknown | PDF6 (PREFOLDIN 6) UNFOLDED PROTEIN BINDING |
AT2G44580 | PredictedPhenotypic Enhancement | FSW = 0.2055
| Unknown | PROTEIN BINDING / ZINC ION BINDING |
AT3G10070 | PredictedPhenotypic Enhancement | FSW = 0.0576
| Unknown | TAF12 (TBP-ASSOCIATED FACTOR 12) DNA BINDING / TRANSCRIPTION INITIATION FACTOR |
AT1G07270 | PredictedSynthetic Lethality | FSW = 0.0651
| Unknown | CELL DIVISION CONTROL PROTEIN CDC6B PUTATIVE (CDC6B) |
AT1G60620 | PredictedPhenotypic Enhancement | FSW = 0.0449
| Unknown | ATRPAC43 DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ PROTEIN DIMERIZATION |
AT1G79890 | PredictedSynthetic LethalityPhenotypic Enhancementinteraction prediction | FSW = 0.2511
| Unknown | HELICASE-RELATED |
AT2G30410 | PredictedPhenotypic Enhancement | FSW = 0.1746
| Unknown | KIS (KIESEL) UNFOLDED PROTEIN BINDING |
AT3G42660 | PredictedSynthetic Lethalitysynthetic growth defectPhenotypic Enhancementinteraction prediction | FSW = 0.1814
| Unknown | NUCLEOTIDE BINDING |
AT5G09740 | Predictedsynthetic growth defect | FSW = 0.0665
| Unknown | HAM2 (HISTONE ACETYLTRANSFERASE OF THE MYST FAMILY 2) H3/H4 HISTONE ACETYLTRANSFERASE/ HISTONE ACETYLTRANSFERASE/ NUCLEIC ACID BINDING / ZINC ION BINDING |
AT4G08960 | PredictedAffinity Capture-Western | FSW = 0.1361
| Unknown | PHOSPHOTYROSYL PHOSPHATASE ACTIVATOR (PTPA) FAMILY PROTEIN |
AT4G22140 | PredictedPhenotypic Enhancement | FSW = 0.0155
| Unknown | DNA BINDING / PROTEIN BINDING / ZINC ION BINDING |
AT4G38630 | PredictedPhenotypic Enhancement | FSW = 0.0719
| Unknown | RPN10 (REGULATORY PARTICLE NON-ATPASE 10) PEPTIDE RECEPTOR |
AT5G02310 | PredictedPhenotypic Enhancement | FSW = 0.0873
| Unknown | PRT6 (PROTEOLYSIS 6) UBIQUITIN-PROTEIN LIGASE |
AT5G23290 | PredictedPhenotypic Enhancement | FSW = 0.1626
| Unknown | PDF5 (PREFOLDIN 5) UNFOLDED PROTEIN BINDING |
AT5G27740 | PredictedPhenotypic Enhancement | FSW = 0.0810
| Unknown | EMB2775 (EMBRYO DEFECTIVE 2775) DNA BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING |
AT5G45600 | PredictedPhenotypic Enhancement | FSW = 0.1302
| Unknown | GAS41 PROTEIN BINDING |
AT5G49510 | PredictedPhenotypic Enhancement | FSW = 0.1615
| Unknown | PDF3 (PREFOLDIN 3) UNFOLDED PROTEIN BINDING |
AT5G66100 | PredictedPhenotypic Suppression | FSW = 0.0858
| Unknown | LA DOMAIN-CONTAINING PROTEIN |
AT3G54930 | PredictedGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.2940
| Unknown | SERINE/THREONINE PROTEIN PHOSPHATASE 2A (PP2A) REGULATORY SUBUNIT B PUTATIVE |
AT5G25510 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.3103
| Unknown | SERINE/THREONINE PROTEIN PHOSPHATASE 2A (PP2A) REGULATORY SUBUNIT B PUTATIVE |
AT1G13460 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.4379
| Unknown | SERINE/THREONINE PROTEIN PHOSPHATASE 2A (PP2A) REGULATORY SUBUNIT B PUTATIVE |
AT4G15415 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.2793
| Unknown | ATB GAMMA POLY(U) BINDING / PROTEIN PHOSPHATASE TYPE 2A REGULATOR |
AT3G09880 | PredictedGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.2508
| Unknown | ATB BETA PROTEIN PHOSPHATASE TYPE 2A REGULATOR |
AT3G21650 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.2427
| Unknown | SERINE/THREONINE PROTEIN PHOSPHATASE 2A (PP2A) REGULATORY SUBUNIT B PUTATIVE |
AT5G03470 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.2608
| Unknown | ATB ALPHA PROTEIN PHOSPHATASE TYPE 2A REGULATOR |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454