Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT2G13370 - ( CHR5 (chromatin remodeling 5) ATP binding / DNA binding / chromatin binding / helicase/ nucleic acid binding )

75 Proteins interacs with AT2G13370
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT2G06510

Predicted

Phenotypic Enhancement

FSW = 0.0347

Class C:

nucleus

 RPA1A (REPLICATION PROTEIN A 1A) DNA BINDING / NUCLEIC ACID BINDING
AT5G59690Predicted

Affinity Capture-MS

FSW = 0.1875

Class C:

nucleus

 HISTONE H4
AT5G22330

Predicted

Affinity Capture-MS

FSW = 0.0986

Class C:

nucleus

 RIN1 (RESISTANCE TO PSEUDOMONAS SYRINGAE PV MACULICOLA INTERACTOR 1) PROTEIN BINDING
AT3G11964Predicted

Affinity Capture-MS

FSW = 0.0323

Class C:

nucleus

 RNA BINDING
AT2G44680

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

FSW = 0.2264

Class C:

nucleus

 CKB4 (CASEIN KINASE II BETA SUBUNIT 4) PROTEIN SERINE/THREONINE KINASE
AT5G67270

Predicted

synthetic growth defect

FSW = 0.1061

Class C:

nucleus

 ATEB1C (MICROTUBULE END BINDING PROTEIN 1) MICROTUBULE BINDING
AT2G24490

Predicted

Phenotypic Enhancement

FSW = 0.1021

Class C:

nucleus

 RPA2 (REPLICON PROTEIN A2) PROTEIN BINDING
AT5G19310

Predicted

Synthetic Lethality

Phenotypic Enhancement

FSW = 0.0623

Class C:

nucleus

 HOMEOTIC GENE REGULATOR PUTATIVE
AT2G18510

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0148

Class C:

nucleus

 EMB2444 (EMBRYO DEFECTIVE 2444) RNA BINDING / NUCLEIC ACID BINDING / NUCLEOTIDE BINDING
AT3G54610

Predicted

Affinity Capture-MS

synthetic growth defect

FSW = 0.1919

Class C:

nucleus

 GCN5 DNA BINDING / H3 HISTONE ACETYLTRANSFERASE/ HISTONE ACETYLTRANSFERASE
AT4G25630

Predicted

Affinity Capture-MS

FSW = 0.0163

Class C:

nucleus

 FIB2 (FIBRILLARIN 2) SNORNA BINDING
AT4G30860

Predicted

Synthetic Rescue

FSW = 0.0163

Class C:

nucleus

 SDG4 (SET DOMAIN GROUP 4) HISTONE METHYLTRANSFERASE
AT3G13445

Predicted

Synthetic Rescue

FSW = 0.0663

Class C:

nucleus

 TBP1 (TATA BINDING PROTEIN 1) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR/ BINDING
AT3G13940

Predicted

Phenotypic Suppression

FSW = 0.0713

Class C:

nucleus

 DNA BINDING / DNA-DIRECTED RNA POLYMERASE
AT4G10710

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Synthetic Rescue

synthetic growth defect

FSW = 0.2250

Class C:

nucleus

 SPT16 (GLOBAL TRANSCRIPTION FACTOR C)
AT3G23620

Predicted

Affinity Capture-MS

FSW = 0.0101

Class C:

nucleus

 BRIX DOMAIN-CONTAINING PROTEIN
AT3G57150

Predicted

Affinity Capture-MS

FSW = 0.0321

Class C:

nucleus

 NAP57 (ARABIDOPSIS THALIANA HOMOLOGUE OF NAP57) PSEUDOURIDINE SYNTHASE
AT4G10670

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.1726

Class C:

nucleus

 GTC2
AT2G47620

Predicted

Phenotypic Enhancement

FSW = 0.1904

Class C:

nucleus

 ATSWI3A (SWITCH/SUCROSE NONFERMENTING 3A) DNA BINDING
AT4G31720

Predicted

Affinity Capture-MS

FSW = 0.1140

Class C:

nucleus

 TAFII15 (TBP-ASSOCIATED FACTOR II 15) RNA POLYMERASE II TRANSCRIPTION FACTOR/ TRANSCRIPTION FACTOR
AT1G07370

Predicted

Phenotypic Enhancement

FSW = 0.1229

Class C:

nucleus

 PCNA1 (PROLIFERATING CELLULAR NUCLEAR ANTIGEN) DNA BINDING / DNA POLYMERASE PROCESSIVITY FACTOR/ PROTEIN BINDING
AT1G65470

Predicted

Phenotypic Enhancement

FSW = 0.1355

Class C:

nucleus

 FAS1 (FASCIATA 1) HISTONE BINDING
AT2G15430

Predicted

Phenotypic Suppression

FSW = 0.0868

Class C:

nucleus

 NRPB3 DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ PROTEIN DIMERIZATION
AT4G08350

Predicted

Affinity Capture-Western

Synthetic Rescue

FSW = 0.1369

Class C:

nucleus

 GTA2 (GLOBAL TRANSCRIPTION FACTOR GROUP A2) STRUCTURAL CONSTITUENT OF RIBOSOME / TRANSCRIPTION ELONGATION REGULATOR/ TRANSCRIPTION FACTOR
AT5G08630

Predicted

synthetic growth defect

FSW = 0.2150

Class C:

nucleus

 DDT DOMAIN-CONTAINING PROTEIN
AT2G24500

Predicted

Phenotypic Suppression

FSW = 0.0930

Class C:

nucleus

 FZF TRANSCRIPTION FACTOR
AT5G25150

Predicted

Affinity Capture-MS

FSW = 0.1172

Class C:

nucleus

 TAF5 (TBP-ASSOCIATED FACTOR 5) NUCLEOTIDE BINDING / TRANSCRIPTION REGULATOR
AT2G34210

Predicted

Affinity Capture-Western

Synthetic Rescue

FSW = 0.1462

Class C:

nucleus

 STRUCTURAL CONSTITUENT OF RIBOSOME / TRANSCRIPTION ELONGATION REGULATOR/ TRANSCRIPTION INITIATION FACTOR
AT2G03870

Predicted

Phenotypic Enhancement

FSW = 0.0785

Class C:

nucleus

 SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE
AT3G06010

Predicted

Synthetic Lethality

FSW = 0.0747

Class C:

nucleus

 ATCHR12 ATP BINDING / DNA BINDING / HELICASE/ NUCLEIC ACID BINDING
AT5G18620

Predicted

Affinity Capture-MS

synthetic growth defect

synthetic growth defect

Affinity Capture-MS

FSW = 0.1169

Class C:

nucleus

 CHR17 (CHROMATIN REMODELING FACTOR17) ATP BINDING / DNA BINDING / DNA-DEPENDENT ATPASE/ HELICASE/ HYDROLASE ACTING ON ACID ANHYDRIDES IN PHOSPHORUS-CONTAINING ANHYDRIDES / NUCLEIC ACID BINDING / NUCLEOSOME BINDING
AT3G06400

Predicted

synthetic growth defect

Affinity Capture-MS

Affinity Capture-MS

synthetic growth defect

interaction prediction

FSW = 0.0282

Class C:

nucleus

 CHR11 (CHROMATIN-REMODELING PROTEIN 11) ATP BINDING / DNA BINDING / DNA-DEPENDENT ATPASE/ HELICASE/ HYDROLASE ACTING ON ACID ANHYDRIDES IN PHOSPHORUS-CONTAINING ANHYDRIDES / NUCLEIC ACID BINDING / NUCLEOSOME BINDING
AT1G07660Predicted

Affinity Capture-MS

FSW = 0.0831

Unknown

 HISTONE H4
AT3G22110

Predicted

Phenotypic Enhancement

FSW = 0.0813

Unknown

 PAC1 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE
AT5G52640

Predicted

synthetic growth defect

FSW = 0.0247

Unknown

 ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING
AT3G47690

Predicted

synthetic growth defect

FSW = 0.0783

Unknown

 ATEB1A MICROTUBULE BINDING
AT4G16420

Predicted

Affinity Capture-MS

FSW = 0.0767

Unknown

 ADA2B (HOMOLOG OF YEAST ADA2 2B) DNA BINDING / TRANSCRIPTION COACTIVATOR/ TRANSCRIPTION FACTOR
AT3G28730

Predicted

Synthetic Rescue

Affinity Capture-Western

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Synthetic Rescue

FSW = 0.2230

Unknown

 ATHMG (ARABIDOPSIS THALIANA HIGH MOBILITY GROUP) TRANSCRIPTION FACTOR
AT3G07880

Predicted

Phenotypic Enhancement

FSW = 0.0147

Unknown

 RHO GDP-DISSOCIATION INHIBITOR FAMILY PROTEIN
AT1G04950

Predicted

Affinity Capture-MS

FSW = 0.1938

Unknown

 TAF6 (TBP-ASSOCIATED FACTOR 6) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR/ TRANSCRIPTION INITIATION FACTOR
AT1G54140

Predicted

Affinity Capture-MS

FSW = 0.1516

Unknown

 TAFII21 (TATA BINDING PROTEIN ASSOCIATED FACTOR 21KDA SUBUNIT) DNA BINDING / TRANSCRIPTION INITIATION FACTOR
AT1G04730Predicted

synthetic growth defect

Phenotypic Enhancement

FSW = 0.1355

Unknown

 AAA-TYPE ATPASE FAMILY PROTEIN
AT1G05910

Predicted

Phenotypic Enhancement

FSW = 0.2067

Unknown

 CELL DIVISION CYCLE PROTEIN 48-RELATED / CDC48-RELATED
AT1G08780

Predicted

Phenotypic Suppression

FSW = 0.1769

Unknown

 AIP3 (ABI3-INTERACTING PROTEIN 3) UNFOLDED PROTEIN BINDING
AT1G29990

Predicted

Phenotypic Suppression

FSW = 0.1280

Unknown

 PDF6 (PREFOLDIN 6) UNFOLDED PROTEIN BINDING
AT1G32130

Predicted

Phenotypic Suppression

FSW = 0.1073

Unknown

 FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 25 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S TFIIS N-TERMINAL (INTERPROIPR017923) IWS1 C-TERMINAL (INTERPROIPR008654) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS IWS1 C-TERMINUS FAMILY PROTEIN (TAIRAT4G190001) HAS 907 BLAST HITS TO 871 PROTEINS IN 182 SPECIES ARCHAE - 4 BACTERIA - 14 METAZOA - 417 FUNGI - 195 PLANTS - 42 VIRUSES - 8 OTHER EUKARYOTES - 227 (SOURCE NCBI BLINK)
AT1G61040

Predicted

two hybrid

Affinity Capture-Western

Affinity Capture-Western

two hybrid

FSW = 0.2133

Unknown

 VIP5 (VERNALIZATION INDEPENDENCE 5) DNA BINDING
AT2G23070

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

FSW = 0.1302

Unknown

 CASEIN KINASE II ALPHA CHAIN PUTATIVE
AT2G44150

Predicted

synthetic growth defect

FSW = 0.2154

Unknown

 ASHH3 (HISTONE-LYSINE N-METHYLTRANSFERASE ASHH3) HISTONE-LYSINE N-METHYLTRANSFERASE
AT2G44580

Predicted

Synthetic Lethality

synthetic growth defect

interaction prediction

FSW = 0.1190

Unknown

 PROTEIN BINDING / ZINC ION BINDING
AT3G22590

Predicted

Phenotypic Suppression

FSW = 0.1599

Unknown

 RNA POL II ACCESSORY FACTOR CDC73 FAMILY PROTEIN
AT3G26020

Predicted

Phenotypic Enhancement

FSW = 0.0927

Unknown

 SERINE/THREONINE PROTEIN PHOSPHATASE 2A (PP2A) REGULATORY SUBUNIT B PUTATIVE
AT3G42660

Predicted

Synthetic Lethality

synthetic growth defect

interaction prediction

FSW = 0.1907

Unknown

 NUCLEOTIDE BINDING
AT5G10260

Predicted

Phenotypic Enhancement

FSW = 0.0801

Unknown

 ATRABH1E (ARABIDOPSIS RAB GTPASE HOMOLOG H1E) GTP BINDING
AT5G22010

Predicted

Phenotypic Enhancement

FSW = 0.0677

Unknown

 ATRFC1 (REPLICATION FACTOR C 1) ATP BINDING / DNA BINDING / DNA CLAMP LOADER/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING
AT5G23290

Predicted

Phenotypic Suppression

FSW = 0.1173

Unknown

 PDF5 (PREFOLDIN 5) UNFOLDED PROTEIN BINDING
AT5G27970Predicted

Phenotypic Enhancement

FSW = 0.0618

Unknown

 BINDING
AT5G41880

Predicted

Phenotypic Enhancement

FSW = 0.0853

Unknown

 POLA3 DNA PRIMASE
AT5G48640

Predicted

Phenotypic Enhancement

FSW = 0.0806

Unknown

 CYCLIN FAMILY PROTEIN
AT5G61150

Predicted

Phenotypic Suppression

FSW = 0.1716

Unknown

 VIP4 (VERNALIZATION INDEPENDENCE 4) PROTEIN BINDING
AT5G63610

Predicted

Phenotypic Enhancement

FSW = 0.0889

Unknown

 CDKE1 (CYCLIN-DEPENDENT KINASE E1) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
AT2G22690

Predicted

Phenotypic Suppression

FSW = 0.0588

Unknown

 PROTEIN BINDING / ZINC ION BINDING
AT3G10070

Predicted

Affinity Capture-MS

FSW = 0.1796

Unknown

 TAF12 (TBP-ASSOCIATED FACTOR 12) DNA BINDING / TRANSCRIPTION INITIATION FACTOR
AT3G22480

Predicted

Phenotypic Suppression

FSW = 0.1355

Unknown

 PREFOLDIN-RELATED KE2 FAMILY PROTEIN
AT3G46320Predicted

Affinity Capture-MS

FSW = 0.1009

Unknown

 HISTONE H4
AT3G54380

Predicted

Phenotypic Enhancement

FSW = 0.1345

Unknown

 SAC3/GANP FAMILY PROTEIN
AT4G36080Predicted

Affinity Capture-MS

FSW = 0.1651

Unknown

 FAT DOMAIN-CONTAINING PROTEIN / PHOSPHATIDYLINOSITOL 3- AND 4-KINASE FAMILY PROTEIN
AT5G10790

Predicted

Affinity Capture-MS

FSW = 0.3769

Unknown

 UBP22 (UBIQUITIN-SPECIFIC PROTEASE 22) UBIQUITIN THIOLESTERASE/ UBIQUITIN-SPECIFIC PROTEASE/ ZINC ION BINDING
AT5G45140

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0317

Unknown

 NRPC2 DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ RIBONUCLEOSIDE BINDING
AT5G67320

Predicted

Phenotypic Enhancement

FSW = 0.0915

Unknown

 HOS15 (HIGH EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 15)
AT2G10440

Predicted

Affinity Capture-MS

FSW = 0.1818

Unknown

 UNKNOWN PROTEIN
AT3G07740

Predicted

Affinity Capture-MS

FSW = 0.1135

Unknown

 ADA2A (HOMOLOG OF YEAST ADA2 2A) DNA BINDING / TRANSCRIPTION FACTOR
AT2G17930

Predicted

Affinity Capture-MS

FSW = 0.1688

Unknown

 BINDING / INOSITOL OR PHOSPHATIDYLINOSITOL KINASE/ PHOSPHOTRANSFERASE ALCOHOL GROUP AS ACCEPTOR
AT2G23080

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0767

Unknown

 CASEIN KINASE II ALPHA CHAIN PUTATIVE
AT5G67380

Predicted

interaction prediction

FSW = 0.0341

Unknown

 CKA1 (CASEIN KINASE ALPHA 1) KINASE

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Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

Learn more

How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454

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