Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G48640 - ( cyclin family protein )
57 Proteins interacs with AT5G48640Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G12580 | PredictedAffinity Capture-Western | FSW = 0.0161
| Unknown | HSP70 (HEAT SHOCK PROTEIN 70) ATP BINDING |
AT5G19740 | PredictedPhenotypic Suppression | FSW = 0.0492
| Unknown | PEPTIDASE M28 FAMILY PROTEIN |
AT1G30470 | PredictedPhenotypic Suppression | FSW = 0.0469
| Unknown | SIT4 PHOSPHATASE-ASSOCIATED FAMILY PROTEIN |
AT3G22110 | PredictedPhenotypic Enhancement | FSW = 0.0481
| Unknown | PAC1 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT5G13710 | PredictedPhenotypic Suppression | FSW = 0.0278
| Unknown | SMT1 (STEROL METHYLTRANSFERASE 1) STEROL 24-C-METHYLTRANSFERASE |
AT1G16030 | PredictedAffinity Capture-Western | FSW = 0.0199
| Unknown | HSP70B (HEAT SHOCK PROTEIN 70B) ATP BINDING |
AT5G43530 | PredictedPhenotypic Suppression | FSW = 0.1190
| Unknown | SNF2 DOMAIN-CONTAINING PROTEIN / HELICASE DOMAIN-CONTAINING PROTEIN / RING FINGER DOMAIN-CONTAINING PROTEIN |
AT3G11630 | PredictedPhenotypic Suppression | FSW = 0.0371
| Unknown | 2-CYS PEROXIREDOXIN CHLOROPLAST (BAS1) |
AT1G12520 | PredictedPhenotypic Suppression | FSW = 0.1340
| Unknown | ATCCS (COPPER CHAPERONE FOR SOD1) SUPEROXIDE DISMUTASE/ SUPEROXIDE DISMUTASE COPPER CHAPERONE |
AT5G58230 | PredictedPhenotypic Enhancement | FSW = 0.0562
| Unknown | MSI1 (MULTICOPY SUPRESSOR OF IRA1) PROTEIN BINDING |
AT4G26110 | PredictedPhenotypic Suppression | FSW = 0.0215
| Unknown | NAP11 (NUCLEOSOME ASSEMBLY PROTEIN11) DNA BINDING |
AT1G16970 | PredictedPhenotypic Enhancement | FSW = 0.0313
| Unknown | KU70 (ARABIDOPSIS THALIANA KU70 HOMOLOG) DOUBLE-STRANDED DNA BINDING / PROTEIN BINDING |
AT3G12480 | PredictedSynthetic Rescue | FSW = 0.0685
| Unknown | NF-YC11 (NUCLEAR FACTOR Y SUBUNIT C11) DNA BINDING / TRANSCRIPTION FACTOR |
AT3G44530 | PredictedPhenotypic Enhancement | FSW = 0.0866
| Unknown | HIRA (ARABIDOPSIS HOMOLOG OF HISTONE CHAPERONE HIRA) NUCLEOTIDE BINDING / PROTEIN BINDING |
AT5G08190 | PredictedSynthetic Rescue | FSW = 0.0756
| Unknown | NF-YB12 (NUCLEAR FACTOR Y SUBUNIT B12) DNA BINDING / TRANSCRIPTION FACTOR |
AT2G43810 | PredictedPhenotypic Enhancement | FSW = 0.1086
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN F PUTATIVE / U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN PUTATIVE / SM PROTEIN F PUTATIVE |
AT3G17590 | PredictedPhenotypic Suppression | FSW = 0.0857
| Unknown | BSH (BUSHY GROWTH) CHROMATIN BINDING / PROTEIN BINDING |
AT1G02740 | PredictedPhenotypic Enhancement | FSW = 0.1131
| Unknown | CHROMATIN BINDING |
AT2G13370 | PredictedPhenotypic Enhancement | FSW = 0.0806
| Unknown | CHR5 (CHROMATIN REMODELING 5) ATP BINDING / DNA BINDING / CHROMATIN BINDING / HELICASE/ NUCLEIC ACID BINDING |
AT2G18760 | PredictedPhenotypic Suppression | FSW = 0.0143
| Unknown | CHR8 (CHROMATIN REMODELING 8) ATP BINDING / DNA BINDING / HELICASE/ NUCLEIC ACID BINDING |
AT2G38560 | PredictedPhenotypic Suppression | FSW = 0.1375
| Unknown | TFIIS (TRANSCRIPT ELONGATION FACTOR IIS) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION ELONGATION FACTOR/ TRANSCRIPTION FACTOR |
AT5G08630 | PredictedPhenotypic Suppression | FSW = 0.0794
| Unknown | DDT DOMAIN-CONTAINING PROTEIN |
AT5G41150 | PredictedPhenotypic Enhancement | FSW = 0.0456
| Unknown | UVH1 (ULTRAVIOLET HYPERSENSITIVE 1) SINGLE-STRANDED DNA SPECIFIC ENDODEOXYRIBONUCLEASE |
AT5G66130 | PredictedPhenotypic Suppression | FSW = 0.0943
| Unknown | ATRAD17 (ARABIDOPSIS THALIANA RADIATION SENSITIVE) |
AT5G19910 | PredictedPhenotypic Suppression | FSW = 0.1839
| Unknown | SOH1 FAMILY PROTEIN |
AT2G22310 | PredictedPhenotypic Suppression | FSW = 0.0682
| Unknown | ATUBP4 (ARABIDOPSIS THALIANA UBIQUITIN-SPECIFIC PROTEASE 4) UBIQUITIN-SPECIFIC PROTEASE |
AT1G02080 | PredictedAffinity Capture-Western | FSW = 0.0294
| Unknown | TRANSCRIPTIONAL REGULATOR-RELATED |
AT1G05910 | PredictedPhenotypic Enhancement | FSW = 0.1504
| Unknown | CELL DIVISION CYCLE PROTEIN 48-RELATED / CDC48-RELATED |
AT1G07705 | PredictedAffinity Capture-Western | FSW = 0.1209
| Unknown | TRANSCRIPTION REGULATOR |
AT1G34150 | PredictedPhenotypic Suppression | FSW = 0.0834
| Unknown | TRNA PSEUDOURIDINE SYNTHASE FAMILY PROTEIN |
AT1G51310 | PredictedPhenotypic Suppression | FSW = 0.0718
| Unknown | TRNA (5-METHYLAMINOMETHYL-2-THIOURIDYLATE)-METHYLTRANSFERASE |
AT1G51710 | PredictedPhenotypic Enhancement | FSW = 0.0941
| Unknown | UBP6 (UBIQUITIN-SPECIFIC PROTEASE 6) CALMODULIN BINDING / UBIQUITIN-SPECIFIC PROTEASE |
AT1G64550 | PredictedPhenotypic Enhancement | FSW = 0.0120
| Unknown | ATGCN3 TRANSPORTER |
AT2G18600 | PredictedPhenotypic Suppression | FSW = 0.0611
| Unknown | RUB1-CONJUGATING ENZYME PUTATIVE |
AT2G44150 | PredictedPhenotypic Enhancement | FSW = 0.1081
| Unknown | ASHH3 (HISTONE-LYSINE N-METHYLTRANSFERASE ASHH3) HISTONE-LYSINE N-METHYLTRANSFERASE |
AT3G01090 | PredictedAffinity Capture-WesternPhenotypic Suppressiontwo hybridSynthetic Rescue | FSW = 0.0648
| Unknown | AKIN10 (ARABIDOPSIS SNF1 KINASE HOMOLOG 10) PROTEIN BINDING / PROTEIN KINASE |
AT3G06580 | Predictedinterologs mapping | FSW = 0.0311
| Unknown | GALK ATP BINDING / GALACTOKINASE |
AT3G11910 | PredictedPhenotypic Enhancement | FSW = 0.0128
| Unknown | UBP13 (UBIQUITIN-SPECIFIC PROTEASE 13) UBIQUITIN THIOLESTERASE/ UBIQUITIN-SPECIFIC PROTEASE |
AT3G22480 | PredictedPhenotypic Suppression | FSW = 0.1236
| Unknown | PREFOLDIN-RELATED KE2 FAMILY PROTEIN |
AT4G38630 | PredictedPhenotypic Suppression | FSW = 0.0632
| Unknown | RPN10 (REGULATORY PARTICLE NON-ATPASE 10) PEPTIDE RECEPTOR |
AT1G15780 | PredictedPhenotypic Suppression | FSW = 0.0645
| Unknown | UNKNOWN PROTEIN |
AT1G52740 | PredictedPhenotypic Enhancement | FSW = 0.1555
| Unknown | HTA9 (HISTONE H2A PROTEIN 9) DNA BINDING |
AT1G54140 | PredictedSynthetic Lethality | FSW = 0.1486
| Unknown | TAFII21 (TATA BINDING PROTEIN ASSOCIATED FACTOR 21KDA SUBUNIT) DNA BINDING / TRANSCRIPTION INITIATION FACTOR |
AT1G67190 | PredictedSynthetic Lethality | FSW = 0.1414
| Unknown | F-BOX FAMILY PROTEIN |
AT2G18290 | Predictedtwo hybrid | FSW = 0.0397
| Unknown | ANAPHASE-PROMOTING COMPLEX SUBUNIT 10 FAMILY / APC10 FAMILY |
AT2G45000 | PredictedPhenotypic Suppression | FSW = 0.0563
| Unknown | EMB2766 (EMBRYO DEFECTIVE 2766) STRUCTURAL CONSTITUENT OF NUCLEAR PORE |
AT3G06670 | PredictedPhenotypic Enhancement | FSW = 0.0272
| Unknown | BINDING |
AT3G22590 | PredictedSynthetic LethalitySynthetic Lethality | FSW = 0.1721
| Unknown | RNA POL II ACCESSORY FACTOR CDC73 FAMILY PROTEIN |
AT3G42660 | Predictedsynthetic growth defectPhenotypic Enhancement | FSW = 0.1724
| Unknown | NUCLEOTIDE BINDING |
AT3G49660 | PredictedAffinity Capture-Western | FSW = 0.0866
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT5G26680 | Predictedsynthetic growth defect | FSW = 0.1390
| Unknown | ENDONUCLEASE PUTATIVE |
AT5G45600 | PredictedPhenotypic Enhancement | FSW = 0.1815
| Unknown | GAS41 PROTEIN BINDING |
AT5G58690 | PredictedSynthetic RescuePhenotypic Suppression | FSW = 0.0184
| Unknown | PHOSPHOINOSITIDE-SPECIFIC PHOSPHOLIPASE C FAMILY PROTEIN |
AT5G63610 | Predictedtwo hybridReconstituted Complextwo hybridtwo hybridAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternReconstituted Complextwo hybrid | FSW = 0.3756
| Unknown | CDKE1 (CYCLIN-DEPENDENT KINASE E1) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT5G49510 | PredictedPhenotypic Enhancement | FSW = 0.1218
| Unknown | PDF3 (PREFOLDIN 3) UNFOLDED PROTEIN BINDING |
AT5G63920 | PredictedPhenotypic Enhancement | FSW = 0.0919
| Unknown | DNA TOPOISOMERASE III ALPHA PUTATIVE |
AT5G48630 | PredictedGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.1642
| Unknown | CYCLIN FAMILY PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454