Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G08630 - ( DDT domain-containing protein )
30 Proteins interacs with AT5G08630Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT5G59690 | PredictedColocalization | FSW = 0.1556
| Class C:nucleus | HISTONE H4 |
AT2G24490 | PredictedPhenotypic Suppression | FSW = 0.0947
| Class C:nucleus | RPA2 (REPLICON PROTEIN A2) PROTEIN BINDING |
AT1G07980 | PredictedCo-purificationAffinity Capture-Western | FSW = 0.2032
| Class C:nucleus | NF-YC10 (NUCLEAR FACTOR Y SUBUNIT C10) TRANSCRIPTION FACTOR |
AT3G54280 | PredictedAffinity Capture-MS | FSW = 0.0973
| Class C:nucleus | RGD3 (ROOT GROWTH DEFECTIVE 3) ATP BINDING / DNA BINDING / BINDING / HELICASE/ NUCLEIC ACID BINDING |
AT2G35670 | PredictedPhenotypic Enhancement | FSW = 0.0118
| Class C:nucleus | FIS2 (FERTILIZATION INDEPENDENT SEED 2) TRANSCRIPTION FACTOR |
AT2G47620 | PredictedAffinity Capture-MS | FSW = 0.1397
| Class C:nucleus | ATSWI3A (SWITCH/SUCROSE NONFERMENTING 3A) DNA BINDING |
AT2G27470 | PredictedAffinity Capture-Western | FSW = 0.2058
| Class C:nucleus | NF-YB11 (NUCLEAR FACTOR Y SUBUNIT B11) TRANSCRIPTION FACTOR |
AT2G13370 | Predictedsynthetic growth defect | FSW = 0.2150
| Class C:nucleus | CHR5 (CHROMATIN REMODELING 5) ATP BINDING / DNA BINDING / CHROMATIN BINDING / HELICASE/ NUCLEIC ACID BINDING |
AT1G65470 | PredictedPhenotypic Enhancement | FSW = 0.1209
| Class C:nucleus | FAS1 (FASCIATA 1) HISTONE BINDING |
AT2G37470 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0509
| Class C:nucleus | HISTONE H2B PUTATIVE |
AT3G19210 | PredictedPhenotypic Enhancement | FSW = 0.0802
| Class C:nucleus | ATRAD54 (ARABIDOPSIS HOMOLOG OF RAD54) ATP BINDING / DNA BINDING / HELICASE/ NUCLEIC ACID BINDING |
AT1G02680 | PredictedPhenotypic Suppression | FSW = 0.0505
| Class C:nucleus | TAF13 (TBP-ASSOCIATED FACTOR 13) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR |
AT2G03870 | PredictedPhenotypic Enhancement | FSW = 0.0333
| Class C:nucleus | SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE |
AT5G18620 | Predictedin vivoin vitroAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternReconstituted Complexco-fractionationCo-fractionationCo-purificationReconstituted ComplexAffinity Capture-WesternCo-purificationAffinity Capture-WesternCo-purificationCo-purificationReconstituted ComplexReconstituted ComplexAffinity Capture-Westernco-fractionationCo-fractionationAffinity Capture-MSPhenotypic Enhancementin vitroin vivoCo-expression | FSW = 0.3490
| Class C:nucleus | CHR17 (CHROMATIN REMODELING FACTOR17) ATP BINDING / DNA BINDING / DNA-DEPENDENT ATPASE/ HELICASE/ HYDROLASE ACTING ON ACID ANHYDRIDES IN PHOSPHORUS-CONTAINING ANHYDRIDES / NUCLEIC ACID BINDING / NUCLEOSOME BINDING |
AT5G52640 | Predictedsynthetic growth defect | FSW = 0.0112
| Unknown | ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING |
AT5G63860 | PredictedAffinity Capture-MS | FSW = 0.0955
| Unknown | UVR8 (UVB-RESISTANCE 8) CHROMATIN BINDING / GUANYL-NUCLEOTIDE EXCHANGE FACTOR |
AT4G16144 | Predictedtwo hybrid | FSW = 0.0441
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN CONTAINS INTERPRO DOMAIN/S MOV34/MPN/PAD-1 (INTERPROIPR000555) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS MOV34 FAMILY PROTEIN (TAIRAT1G487901) HAS 622 BLAST HITS TO 459 PROTEINS IN 132 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 326 FUNGI - 156 PLANTS - 82 VIRUSES - 0 OTHER EUKARYOTES - 58 (SOURCE NCBI BLINK) |
AT1G34150 | PredictedPhenotypic Enhancement | FSW = 0.1152
| Unknown | TRNA PSEUDOURIDINE SYNTHASE FAMILY PROTEIN |
AT1G79730 | PredictedPhenotypic Enhancement | FSW = 0.0352
| Unknown | ELF7 (EARLY FLOWERING 7) |
AT3G01090 | PredictedPhenotypic Enhancement | FSW = 0.0231
| Unknown | AKIN10 (ARABIDOPSIS SNF1 KINASE HOMOLOG 10) PROTEIN BINDING / PROTEIN KINASE |
AT3G10070 | PredictedPhenotypic Suppression | FSW = 0.0835
| Unknown | TAF12 (TBP-ASSOCIATED FACTOR 12) DNA BINDING / TRANSCRIPTION INITIATION FACTOR |
AT3G46320 | PredictedColocalization | FSW = 0.0880
| Unknown | HISTONE H4 |
AT1G05910 | PredictedPhenotypic Suppression | FSW = 0.1477
| Unknown | CELL DIVISION CYCLE PROTEIN 48-RELATED / CDC48-RELATED |
AT1G54140 | PredictedPhenotypic Suppression | FSW = 0.0893
| Unknown | TAFII21 (TATA BINDING PROTEIN ASSOCIATED FACTOR 21KDA SUBUNIT) DNA BINDING / TRANSCRIPTION INITIATION FACTOR |
AT3G18520 | PredictedPhenotypic Enhancement | FSW = 0.0487
| Unknown | HDA15 HISTONE DEACETYLASE |
AT4G22140 | PredictedPhenotypic Suppression | FSW = 0.0976
| Unknown | DNA BINDING / PROTEIN BINDING / ZINC ION BINDING |
AT5G13680 | PredictedPhenotypic Enhancement | FSW = 0.0441
| Unknown | ABO1 (ABA-OVERLY SENSITIVE 1) TRANSCRIPTION ELONGATION REGULATOR |
AT5G41880 | PredictedPhenotypic Suppression | FSW = 0.0781
| Unknown | POLA3 DNA PRIMASE |
AT5G43500 | PredictedPhenotypic Enhancement | FSW = 0.0526
| Unknown | ATARP9 (ACTIN-RELATED PROTEIN 9) DNA BINDING / PROTEIN BINDING |
AT5G48640 | PredictedPhenotypic Suppression | FSW = 0.0794
| Unknown | CYCLIN FAMILY PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454