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AT1G02680 - ( TAF13 (TBP-ASSOCIATED FACTOR 13) DNA binding / RNA polymerase II transcription factor )

121 Proteins interacs with AT1G02680

Locus	Method	FSW	Cellular Compartment Classification (C3)	Description
AT4G14340	Experimental protein array	FSW = 0.0092	Class A: nucleus Class B: cytosol	CKI1 (CASEIN KINASE I) KINASE/ PROTEIN SERINE/THREONINE KINASE
AT2G24840	Experimental protein array	FSW = 0.0267	Class A: nucleus Class D: plastid (p = 0.78) mitochondrion (p = 0.82)	AGL61 (AGAMOUS-LIKE 61) DNA BINDING / TRANSCRIPTION FACTOR
AT1G17440	Experimental two hybrid	FSW = 0.1456	Class A: nucleus Class D: plastid (p = 0.78)	EER4 (ENHANCED ETHYLENE RESPONSE 4) DNA BINDING / TRANSCRIPTION INITIATION FACTOR
AT5G23260	Experimental protein array	FSW = 0.0046	Class A: nucleus Class D: plastid (p = 0.78)	TT16 (TRANSPARENT TESTA16) TRANSCRIPTION FACTOR
AT5G41920	Experimental protein array	FSW = 0.0143	Class A: nucleus Class D: mitochondrion (p = 0.82) cytosol (p = 0.67)	SCARECROW TRANSCRIPTION FACTOR FAMILY PROTEIN
AT5G48670	Experimental protein array	FSW = 0.0222	Class A: nucleus Class D: mitochondrion (p = 0.82)	AGL80 (AGAMOUS-LIKE 80) DNA BINDING / TRANSCRIPTION FACTOR
AT5G27050	Experimental protein array	FSW = 0.0099	Class A: nucleus Class D: cytosol (p = 0.67)	AGL101 TRANSCRIPTION FACTOR
AT4G31720	Experimental two hybrid	FSW = 0.1006	Class A: nucleus Class D: cytosol (p = 0.67)	TAFII15 (TBP-ASSOCIATED FACTOR II 15) RNA POLYMERASE II TRANSCRIPTION FACTOR/ TRANSCRIPTION FACTOR
AT5G25150	Experimental	FSW = 0.1532	Class A: nucleus	TAF5 (TBP-ASSOCIATED FACTOR 5) NUCLEOTIDE BINDING / TRANSCRIPTION REGULATOR
AT5G56030	Experimental protein array	FSW = 0.0093	Class B: plasma membrane peroxisome nucleus mitochondrion cytosol Class D: cytosol (p = 0.67)	HSP81-2 (HEAT SHOCK PROTEIN 81-2) ATP BINDING
AT1G54610	Experimental protein array	FSW = 0.0099	Class B: plasma membrane nucleus Class D: plastid (p = 0.78) mitochondrion (p = 0.82)	PROTEIN KINASE FAMILY PROTEIN
AT5G13790	Experimental protein array	FSW = 0.0061	Class B: plasma membrane nucleus Class D: plastid (p = 0.78)	AGL15 (AGAMOUS-LIKE 15) DNA BINDING / TRANSCRIPTION FACTOR
AT1G34300	Experimental protein array	FSW = 0.0258	Class B: plasma membrane nucleus Class D: cytosol (p = 0.67)	LECTIN PROTEIN KINASE FAMILY PROTEIN
AT5G60910	Experimental protein array	FSW = 0.0081	Class D: mitochondrion (p = 0.82)	AGL8 (AGAMOUS-LIKE 8) TRANSCRIPTION FACTOR
AT5G35410	Experimental protein array	FSW = 0.0035	Unknown	SOS2 (SALT OVERLY SENSITIVE 2) KINASE/ PROTEIN KINASE
AT4G30960	Experimental protein array	FSW = 0.0072	Unknown	SIP3 (SOS3-INTERACTING PROTEIN 3) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
AT1G20930	Experimental protein array	FSW = 0.0043	Unknown	CDKB22 (CYCLIN-DEPENDENT KINASE B22) CYCLIN-DEPENDENT PROTEIN KINASE/ KINASE
AT3G59150	Experimental protein array	FSW = 0.0117	Unknown	F-BOX FAMILY PROTEIN
AT3G20110	Experimental protein array	FSW = 0.0076	Unknown	CYP705A20 ELECTRON CARRIER/ HEME BINDING / IRON ION BINDING / MONOOXYGENASE/ OXYGEN BINDING
AT4G08980	Experimental protein array	FSW = 0.0076	Unknown	F-BOX FAMILY PROTEIN (FBW2)
AT4G24390	Experimental protein array	FSW = 0.0108	Unknown	F-BOX FAMILY PROTEIN (FBX14)
AT4G02410	Experimental protein array	FSW = 0.0117	Unknown	LECTIN PROTEIN KINASE FAMILY PROTEIN
AT3G04430	Experimental protein array	FSW = 0.0184	Unknown	ANAC049 (ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 49) TRANSCRIPTION FACTOR
AT1G60040	Experimental protein array	FSW = 0.0092	Unknown	AGL49 (AGAMOUS-LIKE 49) TRANSCRIPTION FACTOR
AT5G39810	Experimental protein array	FSW = 0.0108	Unknown	AGL98 (AGAMOUS-LIKE 98) TRANSCRIPTION FACTOR
AT5G26870	Experimental protein array	FSW = 0.0143	Unknown	AGL26 TRANSCRIPTION FACTOR
AT5G41200	Experimental protein array	FSW = 0.0143	Unknown	AGL75 (AGAMOUS-LIKE 75) DNA BINDING / TRANSCRIPTION FACTOR
AT1G10210	Experimental protein array	FSW = 0.0055	Unknown	ATMPK1 (MITOGEN-ACTIVATED PROTEIN KINASE 1) MAP KINASE/ KINASE
AT1G53510	Experimental protein array	FSW = 0.0117	Unknown	ATMPK18 MAP KINASE
ATMG00870	Experimental protein array	FSW = 0.0129	Unknown	HYPOTHETICAL PROTEIN
AT3G10070	Experimental two hybrid	FSW = 0.2216	Unknown	TAF12 (TBP-ASSOCIATED FACTOR 12) DNA BINDING / TRANSCRIPTION INITIATION FACTOR
AT5G45600	Experimental two hybrid	FSW = 0.1728	Unknown	GAS41 PROTEIN BINDING
AT5G43130	Experimental two hybrid	FSW = 0.1482	Unknown	TAF4 (TBP-ASSOCIATED FACTOR 4) TRANSCRIPTION INITIATION FACTOR
AT4G20280	Experimental two hybrid	FSW = 0.0495	Unknown	TAF11 (TBP-ASSOCIATED FACTOR 11) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR/ TRANSCRIPTION INITIATION FACTOR
AT2G18000	Experimental two hybrid	FSW = 0.1313	Unknown	TAF14 (TBP-ASSOCIATED FACTOR 14)
AT4G34340	Experimental two hybrid	FSW = 0.1988	Unknown	TAF8 (TBP-ASSOCIATED FACTOR 8) DNA BINDING
AT5G02500	Predicted Affinity Capture-MS	FSW = 0.0060	Class C: nucleus	HSC70-1 (HEAT SHOCK COGNATE PROTEIN 70-1) ATP BINDING
AT5G59690	Predicted Phenotypic Enhancement	FSW = 0.0590	Class C: nucleus	HISTONE H4
AT5G43530	Predicted Phenotypic Enhancement	FSW = 0.0394	Class C: nucleus	SNF2 DOMAIN-CONTAINING PROTEIN / HELICASE DOMAIN-CONTAINING PROTEIN / RING FINGER DOMAIN-CONTAINING PROTEIN
AT5G62880	Predicted Affinity Capture-MS co-fractionation Co-fractionation two hybrid two hybrid Reconstituted Complex Affinity Capture-Western Affinity Capture-Western Affinity Capture-Western Affinity Capture-MS Affinity Capture-MS two hybrid Affinity Capture-Western Affinity Capture-MS Affinity Capture-MS Affinity Capture-Western two hybrid Co-purification interologs mapping co-fractionation Co-fractionation	FSW = 0.0792	Class C: nucleus	ARAC10 GTP BINDING
AT1G16970	Predicted Phenotypic Enhancement	FSW = 0.0111	Class C: nucleus	KU70 (ARABIDOPSIS THALIANA KU70 HOMOLOG) DOUBLE-STRANDED DNA BINDING / PROTEIN BINDING
AT2G43810	Predicted Phenotypic Enhancement	FSW = 0.1107	Class C: nucleus	SMALL NUCLEAR RIBONUCLEOPROTEIN F PUTATIVE / U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN PUTATIVE / SM PROTEIN F PUTATIVE
AT3G12810	Predicted Phenotypic Enhancement	FSW = 0.1340	Class C: nucleus	PIE1 (PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1) ATP BINDING / DNA BINDING / HELICASE/ NUCLEIC ACID BINDING
AT3G13445	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-Western in vitro two hybrid Affinity Capture-Western Colocalization	FSW = 0.0864	Class C: nucleus	TBP1 (TATA BINDING PROTEIN 1) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR/ BINDING
AT5G35910	Predicted Phenotypic Enhancement	FSW = 0.0448	Class C: nucleus	3-5 EXONUCLEASE DOMAIN-CONTAINING PROTEIN / HELICASE AND RNASE D C-TERMINAL DOMAIN-CONTAINING PROTEIN / HRDC DOMAIN-CONTAINING PROTEIN
AT1G05120	Predicted Phenotypic Suppression	FSW = 0.0287	Class C: nucleus	SNF2 DOMAIN-CONTAINING PROTEIN / HELICASE DOMAIN-CONTAINING PROTEIN / RING FINGER DOMAIN-CONTAINING PROTEIN
AT1G21700	Predicted Phenotypic Suppression	FSW = 0.0174	Class C: nucleus	ATSWI3C (SWITCH/SUCROSE NONFERMENTING 3C) DNA BINDING
AT1G07480	Predicted two hybrid	FSW = 0.0267	Class C: nucleus	TRANSCRIPTION FACTOR IIA LARGE SUBUNIT / TFIIA LARGE SUBUNIT (TFIIA-L)
AT5G59230	Predicted two hybrid	FSW = 0.0086	Class C: nucleus	TRANSCRIPTION FACTOR-RELATED
AT1G55520	Predicted two hybrid in vitro Affinity Capture-Western Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-Western	FSW = 0.0729	Class C: nucleus	TBP2 (TATA BINDING PROTEIN 2) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR/ TATA-BINDING PROTEIN BINDING
AT3G20010	Predicted Phenotypic Enhancement	FSW = 0.0390	Class C: nucleus	SNF2 DOMAIN-CONTAINING PROTEIN / HELICASE DOMAIN-CONTAINING PROTEIN / RING FINGER DOMAIN-CONTAINING PROTEIN
AT4G39160	Predicted Affinity Capture-MS	FSW = 0.0317	Class C: nucleus	DNA BINDING / TRANSCRIPTION FACTOR
AT3G19210	Predicted Phenotypic Enhancement	FSW = 0.0614	Class C: nucleus	ATRAD54 (ARABIDOPSIS HOMOLOG OF RAD54) ATP BINDING / DNA BINDING / HELICASE/ NUCLEIC ACID BINDING
AT5G08630	Predicted Phenotypic Suppression	FSW = 0.0505	Class C: nucleus	DDT DOMAIN-CONTAINING PROTEIN
AT1G07470	Predicted two hybrid	FSW = 0.0469	Class C: nucleus	TRANSCRIPTION FACTOR IIA LARGE SUBUNIT PUTATIVE / TFIIA LARGE SUBUNIT PUTATIVE
AT3G08710	Predicted Affinity Capture-MS	FSW = 0.0316	Unknown	ATH9 (THIOREDOXIN H-TYPE 9)
AT5G19740	Predicted Phenotypic Enhancement	FSW = 0.0489	Unknown	PEPTIDASE M28 FAMILY PROTEIN
AT1G30470	Predicted Phenotypic Suppression	FSW = 0.0231	Unknown	SIT4 PHOSPHATASE-ASSOCIATED FAMILY PROTEIN
AT1G18640	Predicted Phenotypic Enhancement	FSW = 0.0597	Unknown	PSP (3-PHOSPHOSERINE PHOSPHATASE) PHOSPHOSERINE PHOSPHATASE
AT5G58230	Predicted Phenotypic Enhancement	FSW = 0.0285	Unknown	MSI1 (MULTICOPY SUPRESSOR OF IRA1) PROTEIN BINDING
AT3G13560	Predicted Affinity Capture-MS co-fractionation Co-fractionation Affinity Capture-Western Affinity Capture-Western Affinity Capture-Western Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-Western Affinity Capture-MS Affinity Capture-Western Reconstituted Complex co-fractionation Co-fractionation	FSW = 0.0739	Unknown	GLYCOSYL HYDROLASE FAMILY 17 PROTEIN
AT5G23630	Predicted Phenotypic Enhancement	FSW = 0.0229	Unknown	ATPASE E1-E2 TYPE FAMILY PROTEIN / HALOACID DEHALOGENASE-LIKE HYDROLASE FAMILIY PROTEIN
AT2G18180	Predicted Affinity Capture-Western Affinity Capture-Western	FSW = 0.0294	Unknown	SEC14 CYTOSOLIC FACTOR PUTATIVE / PHOSPHOGLYCERIDE TRANSFER PROTEIN PUTATIVE
AT1G13320	Predicted Affinity Capture-MS	FSW = 0.0462	Unknown	PP2AA3 (PROTEIN PHOSPHATASE 2A SUBUNIT A3) BINDING / PROTEIN PHOSPHATASE TYPE 2A REGULATOR
AT3G18524	Predicted Phenotypic Suppression	FSW = 0.0259	Unknown	MSH2 (MUTS HOMOLOG 2) ATP BINDING / DAMAGED DNA BINDING / MISMATCHED DNA BINDING / PROTEIN BINDING
AT1G69850	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.0090	Unknown	ATNRT12 (ARABIDOPSIS THALIANA NITRATE TRANSPORTER 12) CALCIUM ION BINDING / TRANSPORTER
AT4G00520	Predicted Affinity Capture-MS Affinity Capture-Western	FSW = 0.0728	Unknown	ACYL-COA THIOESTERASE FAMILY PROTEIN
AT1G59900	Predicted Phenotypic Enhancement	FSW = 0.0480	Unknown	AT-E1 ALPHA OXIDOREDUCTASE ACTING ON THE ALDEHYDE OR OXO GROUP OF DONORS DISULFIDE AS ACCEPTOR / PYRUVATE DEHYDROGENASE (ACETYL-TRANSFERRING)
AT4G25780	Predicted Affinity Capture-MS	FSW = 0.0489	Unknown	PATHOGENESIS-RELATED PROTEIN PUTATIVE
AT5G18380	Predicted Affinity Capture-MS co-fractionation Co-fractionation Affinity Capture-Western Affinity Capture-MS Affinity Capture-Western Reconstituted Complex co-fractionation Co-fractionation	FSW = 0.0399	Unknown	40S RIBOSOMAL PROTEIN S16 (RPS16C)
AT5G57450	Predicted Phenotypic Enhancement	FSW = 0.0365	Unknown	XRCC3 ATP BINDING / DAMAGED DNA BINDING / PROTEIN BINDING / SINGLE-STRANDED DNA BINDING
AT5G48580	Predicted Phenotypic Suppression	FSW = 0.0083	Unknown	FKBP15-2 FK506 BINDING / PEPTIDYL-PROLYL CIS-TRANS ISOMERASE
AT3G25980	Predicted Phenotypic Suppression	FSW = 0.0319	Unknown	MITOTIC SPINDLE CHECKPOINT PROTEIN PUTATIVE (MAD2)
AT5G51660	Predicted in vitro Co-expression	FSW = 0.0458	Unknown	CPSF160 NUCLEIC ACID BINDING
AT4G29430	Predicted co-fractionation Co-fractionation two hybrid Reconstituted Complex Affinity Capture-Western Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS two hybrid Affinity Capture-MS two hybrid Affinity Capture-Western interologs mapping	FSW = 0.1546	Unknown	RPS15AE (RIBOSOMAL PROTEIN S15A E) STRUCTURAL CONSTITUENT OF RIBOSOME
AT3G54820	Predicted Affinity Capture-MS	FSW = 0.0386	Unknown	PIP25 (PLASMA MEMBRANE INTRINSIC PROTEIN 25) WATER CHANNEL
AT4G10920	Predicted Affinity Capture-MS Affinity Capture-Western Affinity Capture-Western Affinity Capture-Western Affinity Capture-Western Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Co-purification co-fractionation Co-fractionation	FSW = 0.0908	Unknown	KELP DNA BINDING / TRANSCRIPTION COACTIVATOR/ TRANSCRIPTION REGULATOR
AT1G20000	Predicted in vitro in vitro Enriched domain pair	FSW = 0.0606	Unknown	TAF11B (TBP-ASSOCIATED FACTOR 11B) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR/ TRANSCRIPTION INITIATION FACTOR
AT1G04480	Predicted Affinity Capture-MS co-fractionation Co-fractionation	FSW = 0.0994	Unknown	60S RIBOSOMAL PROTEIN L23 (RPL23A)
AT1G04950	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS interaction prediction	FSW = 0.1753	Unknown	TAF6 (TBP-ASSOCIATED FACTOR 6) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR/ TRANSCRIPTION INITIATION FACTOR
AT1G15780	Predicted two hybrid	FSW = 0.0634	Unknown	UNKNOWN PROTEIN
AT1G32750	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Co-purification Affinity Capture-Western	FSW = 0.1895	Unknown	HAF01 DNA BINDING / HISTONE ACETYLTRANSFERASE
AT1G50490	Predicted Phenotypic Enhancement	FSW = 0.0180	Unknown	UBC20 (UBIQUITIN-CONJUGATING ENZYME 20) UBIQUITIN-PROTEIN LIGASE
AT1G54140	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS interaction prediction	FSW = 0.2222	Unknown	TAFII21 (TATA BINDING PROTEIN ASSOCIATED FACTOR 21KDA SUBUNIT) DNA BINDING / TRANSCRIPTION INITIATION FACTOR
AT1G55300	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS	FSW = 0.0862	Unknown	TAF7 (TBP-ASSOCIATED FACTOR 7) GENERAL RNA POLYMERASE II TRANSCRIPTION FACTOR
AT1G55730	Predicted Affinity Capture-MS	FSW = 0.0418	Unknown	ATCAX5 CALCIUMCATION ANTIPORTER/ CATIONCATION ANTIPORTER
AT1G59580	Predicted Affinity Capture-MS	FSW = 0.0160	Unknown	ATMPK2 (ARABIDOPSIS THALIANA MITOGEN-ACTIVATED PROTEIN KINASE HOMOLOG 2) MAP KINASE/ KINASE/ PROTEIN KINASE
AT1G59890	Predicted Phenotypic Enhancement	FSW = 0.0600	Unknown	SNL5 (SIN3-LIKE 5)
AT1G63370	Predicted Affinity Capture-Western Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-Western Co-purification co-fractionation Co-fractionation	FSW = 0.1241	Unknown	FLAVIN-CONTAINING MONOOXYGENASE FAMILY PROTEIN / FMO FAMILY PROTEIN
AT1G66740	Predicted interologs mapping	FSW = 0.1351	Unknown	SGA2
AT1G73960	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.1601	Unknown	TAF2 (TBP-ASSOCIATED FACTOR 2) METALLOPEPTIDASE/ ZINC ION BINDING
AT2G31020	Predicted Affinity Capture-MS	FSW = 0.0110	Unknown	ORP1A (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 1A) OXYSTEROL BINDING
AT3G06670	Predicted Phenotypic Enhancement	FSW = 0.0078	Unknown	BINDING
AT3G12490	Predicted Affinity Capture-MS	FSW = 0.0127	Unknown	CYSTEINE PROTEASE INHIBITOR PUTATIVE / CYSTATIN PUTATIVE
AT3G23570	Predicted Affinity Capture-MS	FSW = 0.0361	Unknown	DIENELACTONE HYDROLASE FAMILY PROTEIN
AT3G24030	Predicted Phenotypic Enhancement	FSW = 0.0414	Unknown	HYDROXYETHYLTHIAZOLE KINASE FAMILY PROTEIN
AT3G62760	Predicted Affinity Capture-MS	FSW = 0.0442	Unknown	ATGSTF13 GLUTATHIONE TRANSFERASE
AT5G27970	Predicted Phenotypic Enhancement	FSW = 0.0794	Unknown	BINDING
AT5G44750	Predicted Phenotypic Enhancement	FSW = 0.0358	Unknown	REV1 DNA-DIRECTED DNA POLYMERASE
AT5G50320	Predicted Phenotypic Enhancement	FSW = 0.0370	Unknown	ELO3 (ELONGATA 3) HISTONE ACETYLTRANSFERASE
AT1G05910	Predicted Phenotypic Enhancement Affinity Capture-MS	FSW = 0.0712	Unknown	CELL DIVISION CYCLE PROTEIN 48-RELATED / CDC48-RELATED
AT1G07705	Predicted two hybrid	FSW = 0.0866	Unknown	TRANSCRIPTION REGULATOR
AT1G34150	Predicted Phenotypic Suppression	FSW = 0.0514	Unknown	TRNA PSEUDOURIDINE SYNTHASE FAMILY PROTEIN
AT1G51710	Predicted Phenotypic Enhancement	FSW = 0.0625	Unknown	UBP6 (UBIQUITIN-SPECIFIC PROTEASE 6) CALMODULIN BINDING / UBIQUITIN-SPECIFIC PROTEASE
AT2G23070	Predicted Affinity Capture-MS	FSW = 0.0132	Unknown	CASEIN KINASE II ALPHA CHAIN PUTATIVE
AT2G33560	Predicted Phenotypic Enhancement	FSW = 0.0145	Unknown	SPINDLE CHECKPOINT PROTEIN-RELATED
AT2G44150	Predicted Phenotypic Enhancement	FSW = 0.0517	Unknown	ASHH3 (HISTONE-LYSINE N-METHYLTRANSFERASE ASHH3) HISTONE-LYSINE N-METHYLTRANSFERASE
AT2G44580	Predicted Phenotypic Enhancement	FSW = 0.0546	Unknown	PROTEIN BINDING / ZINC ION BINDING
AT3G18860	Predicted Phenotypic Enhancement	FSW = 0.1164	Unknown	TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT3G21060	Predicted Phenotypic Enhancement	FSW = 0.0556	Unknown	TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT3G45630	Predicted synthetic growth defect	FSW = 0.0479	Unknown	RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN
AT3G54380	Predicted Phenotypic Enhancement	FSW = 0.0603	Unknown	SAC3/GANP FAMILY PROTEIN
AT3G55080	Predicted Phenotypic Enhancement	FSW = 0.0083	Unknown	SET DOMAIN-CONTAINING PROTEIN
AT3G58560	Predicted two hybrid	FSW = 0.0597	Unknown	ENDONUCLEASE/EXONUCLEASE/PHOSPHATASE FAMILY PROTEIN
AT5G10260	Predicted Phenotypic Enhancement	FSW = 0.0543	Unknown	ATRABH1E (ARABIDOPSIS RAB GTPASE HOMOLOG H1E) GTP BINDING
AT5G18230	Predicted two hybrid synthetic growth defect Reconstituted Complex	FSW = 0.0896	Unknown	TRANSCRIPTION REGULATOR NOT2/NOT3/NOT5 FAMILY PROTEIN
AT5G26680	Predicted Phenotypic Enhancement	FSW = 0.0609	Unknown	ENDONUCLEASE PUTATIVE
AT5G63920	Predicted Phenotypic Enhancement	FSW = 0.0318	Unknown	DNA TOPOISOMERASE III ALPHA PUTATIVE
AT2G10440	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS interaction prediction	FSW = 0.0749	Unknown	UNKNOWN PROTEIN
AT4G30890	Predicted Affinity Capture-MS	FSW = 0.0212	Unknown	UBP24 (UBIQUITIN-SPECIFIC PROTEASE 24) UBIQUITIN THIOLESTERASE/ UBIQUITIN-SPECIFIC PROTEASE
AT2G23080	Predicted Affinity Capture-MS	FSW = 0.0087	Unknown	CASEIN KINASE II ALPHA CHAIN PUTATIVE

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Proteins

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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from

Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment

Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment

Class C: Same as Class A but the PPI is predicted

Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB

Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454

Welcome to AtPIN

AtPIN will be upgraded. Please send your suggestions here

AT1G02680 - ( TAF13 (TBP-ASSOCIATED FACTOR 13) DNA binding / RNA polymerase II transcription factor )

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