Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT4G31720 - ( TAFII15 (TBP-ASSOCIATED FACTOR II 15) RNA polymerase II transcription factor/ transcription factor )

91 Proteins interacs with AT4G31720
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT4G37650

Experimental

FSW = 0.0379

Class A:

nucleus

Class B:

cytosol

Class D:

cytosol (p = 0.67)

SHR (SHORT ROOT) PROTEIN BINDING / SEQUENCE-SPECIFIC DNA BINDING / TRANSCRIPTION FACTOR
AT1G17440

Experimental

two hybrid

FSW = 0.1634

Class A:

nucleus

Class D:

nucleus (p = 0.78)

EER4 (ENHANCED ETHYLENE RESPONSE 4) DNA BINDING / TRANSCRIPTION INITIATION FACTOR
AT3G13445

Experimental

two hybrid

FSW = 0.0912

Class A:

nucleus

Class D:

nucleus (p = 0.78)

TBP1 (TATA BINDING PROTEIN 1) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR/ BINDING
AT5G25150

Experimental

two hybrid

FSW = 0.2055

Class A:

nucleus

Class D:

nucleus (p = 0.78)

TAF5 (TBP-ASSOCIATED FACTOR 5) NUCLEOTIDE BINDING / TRANSCRIPTION REGULATOR
AT1G55520

Experimental

two hybrid

FSW = 0.0928

Class A:

nucleus

Class D:

nucleus (p = 0.78)

TBP2 (TATA BINDING PROTEIN 2) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR/ TATA-BINDING PROTEIN BINDING
AT1G02680

Experimental

two hybrid

FSW = 0.1006

Class A:

nucleus

Class D:

cytosol (p = 0.67)

TAF13 (TBP-ASSOCIATED FACTOR 13) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR
AT1G32750

Experimental

two hybrid

FSW = 0.1931

Unknown

HAF01 DNA BINDING / HISTONE ACETYLTRANSFERASE
AT1G27720

Experimental

two hybrid

FSW = 0.1024

Unknown

TAF4B (TBP-ASSOCIATED FACTOR 4B) TRANSCRIPTION INITIATION FACTOR
AT4G20280

Experimental

two hybrid

FSW = 0.0522

Unknown

TAF11 (TBP-ASSOCIATED FACTOR 11) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR/ TRANSCRIPTION INITIATION FACTOR
AT3G10070

Experimental

two hybrid

FSW = 0.1773

Unknown

TAF12 (TBP-ASSOCIATED FACTOR 12) DNA BINDING / TRANSCRIPTION INITIATION FACTOR
AT5G43130

Experimental

two hybrid

FSW = 0.1678

Unknown

TAF4 (TBP-ASSOCIATED FACTOR 4) TRANSCRIPTION INITIATION FACTOR
AT4G34340

Experimental

two hybrid

FSW = 0.2550

Unknown

TAF8 (TBP-ASSOCIATED FACTOR 8) DNA BINDING
AT1G73960

Experimental

two hybrid

FSW = 0.1424

Unknown

TAF2 (TBP-ASSOCIATED FACTOR 2) METALLOPEPTIDASE/ ZINC ION BINDING
AT3G51920

Experimental

protein array

FSW = 0.0026

Unknown

CAM9 (CALMODULIN 9) CALCIUM ION BINDING
AT1G54140

Experimental

two hybrid

FSW = 0.1494

Unknown

TAFII21 (TATA BINDING PROTEIN ASSOCIATED FACTOR 21KDA SUBUNIT) DNA BINDING / TRANSCRIPTION INITIATION FACTOR
AT5G62880

Predicted

Affinity Capture-MS

FSW = 0.0156

Class C:

nucleus

ARAC10 GTP BINDING
AT3G10330

Predicted

Affinity Capture-MS

FSW = 0.0428

Class C:

nucleus

TRANSCRIPTION INITIATION FACTOR IIB-2 / GENERAL TRANSCRIPTION FACTOR TFIIB-2 (TFIIB2)
AT2G41630

Predicted

Affinity Capture-MS

FSW = 0.0316

Class C:

nucleus

TFIIB (TRANSCRIPTION FACTOR II B) RNA POLYMERASE II TRANSCRIPTION FACTOR/ PROTEIN BINDING / TRANSCRIPTION REGULATOR/ TRANSLATION INITIATION FACTOR/ ZINC ION BINDING
AT1G17790

Predicted

Affinity Capture-MS

FSW = 0.0533

Class C:

nucleus

DNA-BINDING BROMODOMAIN-CONTAINING PROTEIN
AT1G79020

Predicted

Affinity Capture-MS

FSW = 0.0516

Class C:

nucleus

TRANSCRIPTION FACTOR-RELATED
AT3G54610

Predicted

interaction prediction

Co-purification

Affinity Capture-Western

Affinity Capture-Western

Affinity Capture-Western

Affinity Capture-Western

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

interologs mapping

FSW = 0.1152

Class C:

nucleus

GCN5 DNA BINDING / H3 HISTONE ACETYLTRANSFERASE/ HISTONE ACETYLTRANSFERASE
AT2G34440

Predicted

Affinity Capture-MS

FSW = 0.0317

Class C:

nucleus

AGL29 (AGAMOUS-LIKE 29) TRANSCRIPTION FACTOR
AT2G37470

Predicted

Affinity Capture-MS

FSW = 0.0571

Class C:

nucleus

HISTONE H2B PUTATIVE
AT2G13370

Predicted

Affinity Capture-MS

FSW = 0.1140

Class C:

nucleus

CHR5 (CHROMATIN REMODELING 5) ATP BINDING / DNA BINDING / CHROMATIN BINDING / HELICASE/ NUCLEIC ACID BINDING
AT1G06230

Predicted

Affinity Capture-MS

FSW = 0.0445

Class C:

nucleus

GTE4 (GLOBAL TRANSCRIPTION FACTOR GROUP E 4) DNA BINDING
AT4G37940

Predicted

interaction prediction

FSW = 0.0102

Class C:

nucleus

AGL21 TRANSCRIPTION FACTOR
AT2G06210

Predicted

Affinity Capture-MS

FSW = 0.0199

Class C:

nucleus

ELF8 (EARLY FLOWERING 8) BINDING
AT1G12360

Predicted

Synthetic Lethality

FSW = 0.0131

Unknown

KEU (KEULE) PROTEIN TRANSPORTER
AT3G20390

Predicted

Affinity Capture-MS

FSW = 0.0320

Unknown

ENDORIBONUCLEASE L-PSP FAMILY PROTEIN
AT4G35800

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0655

Unknown

NRPB1 (RNA POLYMERASE II LARGE SUBUNIT) DNA BINDING / DNA-DIRECTED RNA POLYMERASE
AT5G15680

Predicted

interaction prediction

FSW = 0.0190

Unknown

BINDING
AT1G50310

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0173

Unknown

STP9 (SUGAR TRANSPORTER 9) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER
AT3G26560

Predicted

interaction prediction

FSW = 0.0095

Unknown

ATP-DEPENDENT RNA HELICASE PUTATIVE
AT1G34065

Predicted

Affinity Capture-MS

FSW = 0.0388

Unknown

SAMC2 (S-ADENOSYLMETHIONINE CARRIER 2) BINDING
AT5G02730

Predicted

Affinity Capture-MS

FSW = 0.0334

Unknown

ALLERGEN V5/TPX-1-RELATED FAMILY PROTEIN
AT4G16420

Predicted

interaction prediction

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-Western

Affinity Capture-Western

Affinity Capture-MS

Affinity Capture-Western

Affinity Capture-MS

Co-purification

interologs mapping

FSW = 0.0940

Unknown

ADA2B (HOMOLOG OF YEAST ADA2 2B) DNA BINDING / TRANSCRIPTION COACTIVATOR/ TRANSCRIPTION FACTOR
AT4G21710

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0288

Unknown

NRPB2 DNA BINDING / DNA-DIRECTED RNA POLYMERASE
AT3G52580

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0284

Unknown

40S RIBOSOMAL PROTEIN S14 (RPS14C)
AT3G22880

Predicted

Affinity Capture-MS

FSW = 0.0188

Unknown

DMC1 (DISRUPTION OF MEIOTIC CONTROL 1) ATP BINDING / DNA BINDING / DNA-DEPENDENT ATPASE/ DAMAGED DNA BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING
AT1G63800

Predicted

two hybrid

two hybrid

FSW = 0.0131

Unknown

UBC5 (UBIQUITIN-CONJUGATING ENZYME 5) UBIQUITIN-PROTEIN LIGASE
AT5G38050

Predicted

two hybrid

FSW = 0.0111

Unknown

UNKNOWN PROTEIN
AT5G41340

Predicted

two hybrid

FSW = 0.0278

Unknown

UBC4 (UBIQUITIN CONJUGATING ENZYME 4) UBIQUITIN-PROTEIN LIGASE
AT5G51940

Predicted

two hybrid

FSW = 0.0294

Unknown

NRPB6A DNA BINDING / DNA-DIRECTED RNA POLYMERASE
AT5G11900

Predicted

two hybrid

FSW = 0.0061

Unknown

EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1 FAMILY PROTEIN
AT5G15570

Predicted

two hybrid

FSW = 0.0104

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 23 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S BROMODOMAIN TRANSCRIPTION FACTOR (INTERPROIPR006565) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS DNA BINDING (TAIRAT3G021601) HAS 143 BLAST HITS TO 143 PROTEINS IN 37 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 85 FUNGI - 0 PLANTS - 50 VIRUSES - 0 OTHER EUKARYOTES - 8 (SOURCE NCBI BLINK)
AT1G04950

Predicted

Co-purification

Affinity Capture-Western

Affinity Capture-Western

Affinity Capture-Western

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Colocalization

Affinity Capture-MS

interologs mapping

interaction prediction

FSW = 0.2207

Unknown

TAF6 (TBP-ASSOCIATED FACTOR 6) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR/ TRANSCRIPTION INITIATION FACTOR
AT1G07430

Predicted

Affinity Capture-MS

FSW = 0.0053

Unknown

PROTEIN PHOSPHATASE 2C PUTATIVE / PP2C PUTATIVE
AT1G20920

Predicted

Affinity Capture-MS

FSW = 0.0495

Unknown

DEAD BOX RNA HELICASE PUTATIVE
AT1G55300

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-Western

Colocalization

Co-purification

FSW = 0.0775

Unknown

TAF7 (TBP-ASSOCIATED FACTOR 7) GENERAL RNA POLYMERASE II TRANSCRIPTION FACTOR
AT1G79730

Predicted

Affinity Capture-MS

FSW = 0.0184

Unknown

ELF7 (EARLY FLOWERING 7)
AT2G03690

Predicted

Affinity Capture-MS

FSW = 0.0303

Unknown

COENZYME Q BIOSYNTHESIS COQ4 FAMILY PROTEIN / UBIQUINONE BIOSYNTHESIS COQ4 FAMILY PROTEIN
AT2G39590

Predicted

Affinity Capture-MS

FSW = 0.0334

Unknown

40S RIBOSOMAL PROTEIN S15A (RPS15AC)
AT3G22590

Predicted

Affinity Capture-MS

FSW = 0.0395

Unknown

RNA POL II ACCESSORY FACTOR CDC73 FAMILY PROTEIN
AT3G23570

Predicted

Affinity Capture-MS

FSW = 0.0689

Unknown

DIENELACTONE HYDROLASE FAMILY PROTEIN
AT3G52390

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0565

Unknown

TATD-RELATED DEOXYRIBONUCLEASE FAMILY PROTEIN
AT4G29640

Predicted

Synthetic Lethality

Affinity Capture-MS

FSW = 0.0683

Unknown

CYTIDINE DEAMINASE PUTATIVE / CYTIDINE AMINOHYDROLASE PUTATIVE
AT1G09270

Predicted

Affinity Capture-MS

FSW = 0.0113

Unknown

IMPA-4 (IMPORTIN ALPHA ISOFORM 4) BINDING / PROTEIN TRANSPORTER
AT1G14310

Predicted

Affinity Capture-MS

FSW = 0.0408

Unknown

HALOACID DEHALOGENASE-LIKE HYDROLASE FAMILY PROTEIN
AT1G63370

Predicted

Affinity Capture-MS

FSW = 0.0441

Unknown

FLAVIN-CONTAINING MONOOXYGENASE FAMILY PROTEIN / FMO FAMILY PROTEIN
AT2G24960

Predicted

Affinity Capture-MS

FSW = 0.0215

Unknown

UNKNOWN PROTEIN
AT2G31020

Predicted

Affinity Capture-MS

FSW = 0.0303

Unknown

ORP1A (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 1A) OXYSTEROL BINDING
AT2G43190

Predicted

two hybrid

FSW = 0.0028

Unknown

RIBONUCLEASE P FAMILY PROTEIN
AT2G45000

Predicted

Phenotypic Suppression

FSW = 0.0047

Unknown

EMB2766 (EMBRYO DEFECTIVE 2766) STRUCTURAL CONSTITUENT OF NUCLEAR PORE
AT3G09640

Predicted

Affinity Capture-MS

FSW = 0.0247

Unknown

APX2 (ASCORBATE PEROXIDASE 2) L-ASCORBATE PEROXIDASE
AT3G43250

Predicted

Affinity Capture-MS

FSW = 0.0122

Unknown

CELL CYCLE CONTROL PROTEIN-RELATED
AT3G53880

Predicted

Co-purification

FSW = 0.0065

Unknown

ALDO/KETO REDUCTASE FAMILY PROTEIN
AT3G56640

Predicted

Synthetic Lethality

FSW = 0.0082

Unknown

EXOCYST COMPLEX SUBUNIT SEC15-LIKE FAMILY PROTEIN
AT4G04885

Predicted

Affinity Capture-MS

FSW = 0.0508

Unknown

PCFS4 (PCF11P-SIMILAR PROTEIN 4) ZINC ION BINDING
AT4G04955

Predicted

Affinity Capture-MS

FSW = 0.0085

Unknown

ATALN (ARABIDOPSIS ALLANTOINASE) ALLANTOINASE/ HYDROLASE
AT4G14670

Predicted

Affinity Capture-MS

FSW = 0.0279

Unknown

CLPB2 ATP BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING
AT4G16440

Predicted

Affinity Capture-MS

FSW = 0.0303

Unknown

FERREDOXIN HYDROGENASE
AT4G25150

Predicted

Affinity Capture-MS

FSW = 0.0208

Unknown

ACID PHOSPHATASE PUTATIVE
AT5G10790

Predicted

Affinity Capture-Western

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.1394

Unknown

UBP22 (UBIQUITIN-SPECIFIC PROTEASE 22) UBIQUITIN THIOLESTERASE/ UBIQUITIN-SPECIFIC PROTEASE/ ZINC ION BINDING
AT5G16170

Predicted

synthetic growth defect

FSW = 0.0098

Unknown

UNKNOWN PROTEIN
AT5G54800

Predicted

interologs mapping

Synthetic Lethality

FSW = 0.0267

Unknown

GPT1 ANTIPORTER/ GLUCOSE-6-PHOSPHATE TRANSMEMBRANE TRANSPORTER
AT5G57330

Predicted

Affinity Capture-MS

FSW = 0.0185

Unknown

ALDOSE 1-EPIMERASE FAMILY PROTEIN
AT5G67380

Predicted

Affinity Capture-MS

FSW = 0.0390

Unknown

CKA1 (CASEIN KINASE ALPHA 1) KINASE
AT4G36080Predicted

Affinity Capture-MS

Co-purification

FSW = 0.1231

Unknown

FAT DOMAIN-CONTAINING PROTEIN / PHOSPHATIDYLINOSITOL 3- AND 4-KINASE FAMILY PROTEIN
AT5G03220

Predicted

Affinity Capture-MS

FSW = 0.0521

Unknown

TRANSCRIPTIONAL CO-ACTIVATOR-RELATED
AT5G45140

Predicted

Affinity Capture-MS

FSW = 0.0264

Unknown

NRPC2 DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ RIBONUCLEOSIDE BINDING
AT3G07740

Predicted

Affinity Capture-Western

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-Western

Co-purification

FSW = 0.1108

Unknown

ADA2A (HOMOLOG OF YEAST ADA2 2A) DNA BINDING / TRANSCRIPTION FACTOR
AT1G26665

Predicted

Affinity Capture-MS

FSW = 0.0271

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 24 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS RNA POLYMERASE II MEDIATOR COMPLEX PROTEIN-RELATED (TAIRAT5G419101) HAS 223 BLAST HITS TO 223 PROTEINS IN 105 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 112 FUNGI - 83 PLANTS - 24 VIRUSES - 0 OTHER EUKARYOTES - 4 (SOURCE NCBI BLINK)
AT2G10440

Predicted

interaction prediction

Affinity Capture-Western

Affinity Capture-Western

Affinity Capture-Western

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-Western

Co-purification

interologs mapping

FSW = 0.2805

Unknown

UNKNOWN PROTEIN
AT2G17930

Predicted

Affinity Capture-MS

Co-purification

interologs mapping

interaction prediction

FSW = 0.1259

Unknown

BINDING / INOSITOL OR PHOSPHATIDYLINOSITOL KINASE/ PHOSPHOTRANSFERASE ALCOHOL GROUP AS ACCEPTOR
AT1G43900

Predicted

Affinity Capture-MS

FSW = 0.0074

Unknown

PROTEIN PHOSPHATASE 2C PUTATIVE / PP2C PUTATIVE
AT1G02010

Predicted

Synthetic Lethality

FSW = 0.0196

Unknown

SEC1A (SIMILAR TO ELECTRON CAREER 1A) PROTEIN TRANSPORTER
AT4G38900

Predicted

interaction prediction

FSW = 0.0233

Unknown

BZIP PROTEIN
AT3G19670Predicted

interaction prediction

FSW = 0.0086

Unknown

PROTEIN BINDING
AT3G04680

Predicted

interaction prediction

FSW = 0.0152

Unknown

CLPS3 (CLP-SIMILAR PROTEIN 3) BINDING
AT5G24940

Predicted

interaction prediction

FSW = 0.0113

Unknown

PROTEIN PHOSPHATASE 2C PUTATIVE / PP2C PUTATIVE
AT1G02080Predicted

interaction prediction

FSW = 0.0449

Unknown

TRANSCRIPTIONAL REGULATOR-RELATED

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Fasta sequences:

Proteins

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454