Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT4G31720 - ( TAFII15 (TBP-ASSOCIATED FACTOR II 15) RNA polymerase II transcription factor/ transcription factor )
91 Proteins interacs with AT4G31720Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT4G37650 | Experimental | FSW = 0.0379
| Class A:nucleusClass B:cytosolClass D:cytosol (p = 0.67) | SHR (SHORT ROOT) PROTEIN BINDING / SEQUENCE-SPECIFIC DNA BINDING / TRANSCRIPTION FACTOR |
AT1G17440 | Experimentaltwo hybrid | FSW = 0.1634
| Class A:nucleusClass D:nucleus (p = 0.78) | EER4 (ENHANCED ETHYLENE RESPONSE 4) DNA BINDING / TRANSCRIPTION INITIATION FACTOR |
AT3G13445 | Experimentaltwo hybrid | FSW = 0.0912
| Class A:nucleusClass D:nucleus (p = 0.78) | TBP1 (TATA BINDING PROTEIN 1) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR/ BINDING |
AT5G25150 | Experimentaltwo hybrid | FSW = 0.2055
| Class A:nucleusClass D:nucleus (p = 0.78) | TAF5 (TBP-ASSOCIATED FACTOR 5) NUCLEOTIDE BINDING / TRANSCRIPTION REGULATOR |
AT1G55520 | Experimentaltwo hybrid | FSW = 0.0928
| Class A:nucleusClass D:nucleus (p = 0.78) | TBP2 (TATA BINDING PROTEIN 2) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR/ TATA-BINDING PROTEIN BINDING |
AT1G02680 | Experimentaltwo hybrid | FSW = 0.1006
| Class A:nucleusClass D:cytosol (p = 0.67) | TAF13 (TBP-ASSOCIATED FACTOR 13) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR |
AT1G32750 | Experimentaltwo hybrid | FSW = 0.1931
| Unknown | HAF01 DNA BINDING / HISTONE ACETYLTRANSFERASE |
AT1G27720 | Experimentaltwo hybrid | FSW = 0.1024
| Unknown | TAF4B (TBP-ASSOCIATED FACTOR 4B) TRANSCRIPTION INITIATION FACTOR |
AT4G20280 | Experimentaltwo hybrid | FSW = 0.0522
| Unknown | TAF11 (TBP-ASSOCIATED FACTOR 11) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR/ TRANSCRIPTION INITIATION FACTOR |
AT3G10070 | Experimentaltwo hybrid | FSW = 0.1773
| Unknown | TAF12 (TBP-ASSOCIATED FACTOR 12) DNA BINDING / TRANSCRIPTION INITIATION FACTOR |
AT5G43130 | Experimentaltwo hybrid | FSW = 0.1678
| Unknown | TAF4 (TBP-ASSOCIATED FACTOR 4) TRANSCRIPTION INITIATION FACTOR |
AT4G34340 | Experimentaltwo hybrid | FSW = 0.2550
| Unknown | TAF8 (TBP-ASSOCIATED FACTOR 8) DNA BINDING |
AT1G73960 | Experimentaltwo hybrid | FSW = 0.1424
| Unknown | TAF2 (TBP-ASSOCIATED FACTOR 2) METALLOPEPTIDASE/ ZINC ION BINDING |
AT3G51920 | Experimentalprotein array | FSW = 0.0026
| Unknown | CAM9 (CALMODULIN 9) CALCIUM ION BINDING |
AT1G54140 | Experimentaltwo hybrid | FSW = 0.1494
| Unknown | TAFII21 (TATA BINDING PROTEIN ASSOCIATED FACTOR 21KDA SUBUNIT) DNA BINDING / TRANSCRIPTION INITIATION FACTOR |
AT5G62880 | PredictedAffinity Capture-MS | FSW = 0.0156
| Class C:nucleus | ARAC10 GTP BINDING |
AT3G10330 | PredictedAffinity Capture-MS | FSW = 0.0428
| Class C:nucleus | TRANSCRIPTION INITIATION FACTOR IIB-2 / GENERAL TRANSCRIPTION FACTOR TFIIB-2 (TFIIB2) |
AT2G41630 | PredictedAffinity Capture-MS | FSW = 0.0316
| Class C:nucleus | TFIIB (TRANSCRIPTION FACTOR II B) RNA POLYMERASE II TRANSCRIPTION FACTOR/ PROTEIN BINDING / TRANSCRIPTION REGULATOR/ TRANSLATION INITIATION FACTOR/ ZINC ION BINDING |
AT1G17790 | PredictedAffinity Capture-MS | FSW = 0.0533
| Class C:nucleus | DNA-BINDING BROMODOMAIN-CONTAINING PROTEIN |
AT1G79020 | PredictedAffinity Capture-MS | FSW = 0.0516
| Class C:nucleus | TRANSCRIPTION FACTOR-RELATED |
AT3G54610 | Predictedinteraction predictionCo-purificationAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinterologs mapping | FSW = 0.1152
| Class C:nucleus | GCN5 DNA BINDING / H3 HISTONE ACETYLTRANSFERASE/ HISTONE ACETYLTRANSFERASE |
AT2G34440 | PredictedAffinity Capture-MS | FSW = 0.0317
| Class C:nucleus | AGL29 (AGAMOUS-LIKE 29) TRANSCRIPTION FACTOR |
AT2G37470 | PredictedAffinity Capture-MS | FSW = 0.0571
| Class C:nucleus | HISTONE H2B PUTATIVE |
AT2G13370 | PredictedAffinity Capture-MS | FSW = 0.1140
| Class C:nucleus | CHR5 (CHROMATIN REMODELING 5) ATP BINDING / DNA BINDING / CHROMATIN BINDING / HELICASE/ NUCLEIC ACID BINDING |
AT1G06230 | PredictedAffinity Capture-MS | FSW = 0.0445
| Class C:nucleus | GTE4 (GLOBAL TRANSCRIPTION FACTOR GROUP E 4) DNA BINDING |
AT4G37940 | Predictedinteraction prediction | FSW = 0.0102
| Class C:nucleus | AGL21 TRANSCRIPTION FACTOR |
AT2G06210 | PredictedAffinity Capture-MS | FSW = 0.0199
| Class C:nucleus | ELF8 (EARLY FLOWERING 8) BINDING |
AT1G12360 | PredictedSynthetic Lethality | FSW = 0.0131
| Unknown | KEU (KEULE) PROTEIN TRANSPORTER |
AT3G20390 | PredictedAffinity Capture-MS | FSW = 0.0320
| Unknown | ENDORIBONUCLEASE L-PSP FAMILY PROTEIN |
AT4G35800 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0655
| Unknown | NRPB1 (RNA POLYMERASE II LARGE SUBUNIT) DNA BINDING / DNA-DIRECTED RNA POLYMERASE |
AT5G15680 | Predictedinteraction prediction | FSW = 0.0190
| Unknown | BINDING |
AT1G50310 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0173
| Unknown | STP9 (SUGAR TRANSPORTER 9) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER |
AT3G26560 | Predictedinteraction prediction | FSW = 0.0095
| Unknown | ATP-DEPENDENT RNA HELICASE PUTATIVE |
AT1G34065 | PredictedAffinity Capture-MS | FSW = 0.0388
| Unknown | SAMC2 (S-ADENOSYLMETHIONINE CARRIER 2) BINDING |
AT5G02730 | PredictedAffinity Capture-MS | FSW = 0.0334
| Unknown | ALLERGEN V5/TPX-1-RELATED FAMILY PROTEIN |
AT4G16420 | Predictedinteraction predictionAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-MSAffinity Capture-WesternAffinity Capture-MSCo-purificationinterologs mapping | FSW = 0.0940
| Unknown | ADA2B (HOMOLOG OF YEAST ADA2 2B) DNA BINDING / TRANSCRIPTION COACTIVATOR/ TRANSCRIPTION FACTOR |
AT4G21710 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0288
| Unknown | NRPB2 DNA BINDING / DNA-DIRECTED RNA POLYMERASE |
AT3G52580 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0284
| Unknown | 40S RIBOSOMAL PROTEIN S14 (RPS14C) |
AT3G22880 | PredictedAffinity Capture-MS | FSW = 0.0188
| Unknown | DMC1 (DISRUPTION OF MEIOTIC CONTROL 1) ATP BINDING / DNA BINDING / DNA-DEPENDENT ATPASE/ DAMAGED DNA BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING |
AT1G63800 | Predictedtwo hybridtwo hybrid | FSW = 0.0131
| Unknown | UBC5 (UBIQUITIN-CONJUGATING ENZYME 5) UBIQUITIN-PROTEIN LIGASE |
AT5G38050 | Predictedtwo hybrid | FSW = 0.0111
| Unknown | UNKNOWN PROTEIN |
AT5G41340 | Predictedtwo hybrid | FSW = 0.0278
| Unknown | UBC4 (UBIQUITIN CONJUGATING ENZYME 4) UBIQUITIN-PROTEIN LIGASE |
AT5G51940 | Predictedtwo hybrid | FSW = 0.0294
| Unknown | NRPB6A DNA BINDING / DNA-DIRECTED RNA POLYMERASE |
AT5G11900 | Predictedtwo hybrid | FSW = 0.0061
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1 FAMILY PROTEIN |
AT5G15570 | Predictedtwo hybrid | FSW = 0.0104
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 23 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S BROMODOMAIN TRANSCRIPTION FACTOR (INTERPROIPR006565) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS DNA BINDING (TAIRAT3G021601) HAS 143 BLAST HITS TO 143 PROTEINS IN 37 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 85 FUNGI - 0 PLANTS - 50 VIRUSES - 0 OTHER EUKARYOTES - 8 (SOURCE NCBI BLINK) |
AT1G04950 | PredictedCo-purificationAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSColocalizationAffinity Capture-MSinterologs mappinginteraction prediction | FSW = 0.2207
| Unknown | TAF6 (TBP-ASSOCIATED FACTOR 6) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR/ TRANSCRIPTION INITIATION FACTOR |
AT1G07430 | PredictedAffinity Capture-MS | FSW = 0.0053
| Unknown | PROTEIN PHOSPHATASE 2C PUTATIVE / PP2C PUTATIVE |
AT1G20920 | PredictedAffinity Capture-MS | FSW = 0.0495
| Unknown | DEAD BOX RNA HELICASE PUTATIVE |
AT1G55300 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternColocalizationCo-purification | FSW = 0.0775
| Unknown | TAF7 (TBP-ASSOCIATED FACTOR 7) GENERAL RNA POLYMERASE II TRANSCRIPTION FACTOR |
AT1G79730 | PredictedAffinity Capture-MS | FSW = 0.0184
| Unknown | ELF7 (EARLY FLOWERING 7) |
AT2G03690 | PredictedAffinity Capture-MS | FSW = 0.0303
| Unknown | COENZYME Q BIOSYNTHESIS COQ4 FAMILY PROTEIN / UBIQUINONE BIOSYNTHESIS COQ4 FAMILY PROTEIN |
AT2G39590 | PredictedAffinity Capture-MS | FSW = 0.0334
| Unknown | 40S RIBOSOMAL PROTEIN S15A (RPS15AC) |
AT3G22590 | PredictedAffinity Capture-MS | FSW = 0.0395
| Unknown | RNA POL II ACCESSORY FACTOR CDC73 FAMILY PROTEIN |
AT3G23570 | PredictedAffinity Capture-MS | FSW = 0.0689
| Unknown | DIENELACTONE HYDROLASE FAMILY PROTEIN |
AT3G52390 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0565
| Unknown | TATD-RELATED DEOXYRIBONUCLEASE FAMILY PROTEIN |
AT4G29640 | PredictedSynthetic LethalityAffinity Capture-MS | FSW = 0.0683
| Unknown | CYTIDINE DEAMINASE PUTATIVE / CYTIDINE AMINOHYDROLASE PUTATIVE |
AT1G09270 | PredictedAffinity Capture-MS | FSW = 0.0113
| Unknown | IMPA-4 (IMPORTIN ALPHA ISOFORM 4) BINDING / PROTEIN TRANSPORTER |
AT1G14310 | PredictedAffinity Capture-MS | FSW = 0.0408
| Unknown | HALOACID DEHALOGENASE-LIKE HYDROLASE FAMILY PROTEIN |
AT1G63370 | PredictedAffinity Capture-MS | FSW = 0.0441
| Unknown | FLAVIN-CONTAINING MONOOXYGENASE FAMILY PROTEIN / FMO FAMILY PROTEIN |
AT2G24960 | PredictedAffinity Capture-MS | FSW = 0.0215
| Unknown | UNKNOWN PROTEIN |
AT2G31020 | PredictedAffinity Capture-MS | FSW = 0.0303
| Unknown | ORP1A (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 1A) OXYSTEROL BINDING |
AT2G43190 | Predictedtwo hybrid | FSW = 0.0028
| Unknown | RIBONUCLEASE P FAMILY PROTEIN |
AT2G45000 | PredictedPhenotypic Suppression | FSW = 0.0047
| Unknown | EMB2766 (EMBRYO DEFECTIVE 2766) STRUCTURAL CONSTITUENT OF NUCLEAR PORE |
AT3G09640 | PredictedAffinity Capture-MS | FSW = 0.0247
| Unknown | APX2 (ASCORBATE PEROXIDASE 2) L-ASCORBATE PEROXIDASE |
AT3G43250 | PredictedAffinity Capture-MS | FSW = 0.0122
| Unknown | CELL CYCLE CONTROL PROTEIN-RELATED |
AT3G53880 | PredictedCo-purification | FSW = 0.0065
| Unknown | ALDO/KETO REDUCTASE FAMILY PROTEIN |
AT3G56640 | PredictedSynthetic Lethality | FSW = 0.0082
| Unknown | EXOCYST COMPLEX SUBUNIT SEC15-LIKE FAMILY PROTEIN |
AT4G04885 | PredictedAffinity Capture-MS | FSW = 0.0508
| Unknown | PCFS4 (PCF11P-SIMILAR PROTEIN 4) ZINC ION BINDING |
AT4G04955 | PredictedAffinity Capture-MS | FSW = 0.0085
| Unknown | ATALN (ARABIDOPSIS ALLANTOINASE) ALLANTOINASE/ HYDROLASE |
AT4G14670 | PredictedAffinity Capture-MS | FSW = 0.0279
| Unknown | CLPB2 ATP BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING |
AT4G16440 | PredictedAffinity Capture-MS | FSW = 0.0303
| Unknown | FERREDOXIN HYDROGENASE |
AT4G25150 | PredictedAffinity Capture-MS | FSW = 0.0208
| Unknown | ACID PHOSPHATASE PUTATIVE |
AT5G10790 | PredictedAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.1394
| Unknown | UBP22 (UBIQUITIN-SPECIFIC PROTEASE 22) UBIQUITIN THIOLESTERASE/ UBIQUITIN-SPECIFIC PROTEASE/ ZINC ION BINDING |
AT5G16170 | Predictedsynthetic growth defect | FSW = 0.0098
| Unknown | UNKNOWN PROTEIN |
AT5G54800 | Predictedinterologs mappingSynthetic Lethality | FSW = 0.0267
| Unknown | GPT1 ANTIPORTER/ GLUCOSE-6-PHOSPHATE TRANSMEMBRANE TRANSPORTER |
AT5G57330 | PredictedAffinity Capture-MS | FSW = 0.0185
| Unknown | ALDOSE 1-EPIMERASE FAMILY PROTEIN |
AT5G67380 | PredictedAffinity Capture-MS | FSW = 0.0390
| Unknown | CKA1 (CASEIN KINASE ALPHA 1) KINASE |
AT4G36080 | PredictedAffinity Capture-MSCo-purification | FSW = 0.1231
| Unknown | FAT DOMAIN-CONTAINING PROTEIN / PHOSPHATIDYLINOSITOL 3- AND 4-KINASE FAMILY PROTEIN |
AT5G03220 | PredictedAffinity Capture-MS | FSW = 0.0521
| Unknown | TRANSCRIPTIONAL CO-ACTIVATOR-RELATED |
AT5G45140 | PredictedAffinity Capture-MS | FSW = 0.0264
| Unknown | NRPC2 DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ RIBONUCLEOSIDE BINDING |
AT3G07740 | PredictedAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternCo-purification | FSW = 0.1108
| Unknown | ADA2A (HOMOLOG OF YEAST ADA2 2A) DNA BINDING / TRANSCRIPTION FACTOR |
AT1G26665 | PredictedAffinity Capture-MS | FSW = 0.0271
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 24 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS RNA POLYMERASE II MEDIATOR COMPLEX PROTEIN-RELATED (TAIRAT5G419101) HAS 223 BLAST HITS TO 223 PROTEINS IN 105 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 112 FUNGI - 83 PLANTS - 24 VIRUSES - 0 OTHER EUKARYOTES - 4 (SOURCE NCBI BLINK) |
AT2G10440 | Predictedinteraction predictionAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternCo-purificationinterologs mapping | FSW = 0.2805
| Unknown | UNKNOWN PROTEIN |
AT2G17930 | PredictedAffinity Capture-MSCo-purificationinterologs mappinginteraction prediction | FSW = 0.1259
| Unknown | BINDING / INOSITOL OR PHOSPHATIDYLINOSITOL KINASE/ PHOSPHOTRANSFERASE ALCOHOL GROUP AS ACCEPTOR |
AT1G43900 | PredictedAffinity Capture-MS | FSW = 0.0074
| Unknown | PROTEIN PHOSPHATASE 2C PUTATIVE / PP2C PUTATIVE |
AT1G02010 | PredictedSynthetic Lethality | FSW = 0.0196
| Unknown | SEC1A (SIMILAR TO ELECTRON CAREER 1A) PROTEIN TRANSPORTER |
AT4G38900 | Predictedinteraction prediction | FSW = 0.0233
| Unknown | BZIP PROTEIN |
AT3G19670 | Predictedinteraction prediction | FSW = 0.0086
| Unknown | PROTEIN BINDING |
AT3G04680 | Predictedinteraction prediction | FSW = 0.0152
| Unknown | CLPS3 (CLP-SIMILAR PROTEIN 3) BINDING |
AT5G24940 | Predictedinteraction prediction | FSW = 0.0113
| Unknown | PROTEIN PHOSPHATASE 2C PUTATIVE / PP2C PUTATIVE |
AT1G02080 | Predictedinteraction prediction | FSW = 0.0449
| Unknown | TRANSCRIPTIONAL REGULATOR-RELATED |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454