Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G52390 - ( tatD-related deoxyribonuclease family protein )
116 Proteins interacs with AT3G52390| Locus | Method | FSW  | Cellular Compartment Classification (C3) | Description |
|---|---|---|---|---|
AT4G32470
   | PredictedAffinity Capture-MS | FSW = 0.5732
| Unknown | UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX 14 KDA PROTEIN PUTATIVE |
| AT2G36160
| PredictedAffinity Capture-MS | FSW = 0.1618
| Unknown | 40S RIBOSOMAL PROTEIN S14 (RPS14A) |
| AT3G47520
| PredictedAffinity Capture-MS | FSW = 0.0232
| Unknown | MDH (MALATE DEHYDROGENASE) L-MALATE DEHYDROGENASE/ BINDING / CATALYTIC/ MALATE DEHYDROGENASE/ OXIDOREDUCTASE/ OXIDOREDUCTASE ACTING ON THE CH-OH GROUP OF DONORS NAD OR NADP AS ACCEPTOR |
| AT2G20450
| PredictedAffinity Capture-MS | FSW = 0.4698
| Unknown | 60S RIBOSOMAL PROTEIN L14 (RPL14A) |
| AT3G08710
| PredictedAffinity Capture-MS | FSW = 0.2300
| Unknown | ATH9 (THIOREDOXIN H-TYPE 9) |
| AT3G56190
| PredictedAffinity Capture-MS | FSW = 0.4159
| Unknown | ALPHA-SNAP2 (ALPHA-SOLUBLE NSF ATTACHMENT PROTEIN 2) BINDING / SOLUBLE NSF ATTACHMENT PROTEIN |
| AT3G62150
| PredictedAffinity Capture-MS | FSW = 0.1967
| Unknown | PGP21 (P-GLYCOPROTEIN 21) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES |
| AT1G22780
| PredictedAffinity Capture-MS | FSW = 0.5270
| Unknown | PFL (POINTED FIRST LEAVES) RNA BINDING / NUCLEIC ACID BINDING / STRUCTURAL CONSTITUENT OF RIBOSOME |
| AT1G07930 | PredictedAffinity Capture-MS | FSW = 0.6264
| Unknown | ELONGATION FACTOR 1-ALPHA / EF-1-ALPHA |
| AT3G08950
| PredictedAffinity Capture-MS | FSW = 0.6337
| Unknown | ELECTRON TRANSPORT SCO1/SENC FAMILY PROTEIN |
| AT2G19860
| PredictedAffinity Capture-MS | FSW = 0.5107
| Unknown | HXK2 (HEXOKINASE 2) ATP BINDING / FRUCTOKINASE/ GLUCOKINASE/ HEXOKINASE |
| AT4G01370
| Predictedbiochemical | FSW = 0.0078
| Unknown | ATMPK4 (ARABIDOPSIS THALIANA MAP KINASE 4) MAP KINASE/ KINASE |
| AT3G19980
| PredictedAffinity Capture-MS | FSW = 0.4767
| Unknown | ATFYPP3 (FLOWER-SPECIFIC PHYTOCHROME-ASSOCIATED PROTEIN PHOSPHATASE 3) PROTEIN BINDING / PROTEIN SERINE/THREONINE KINASE/ PROTEIN SERINE/THREONINE PHOSPHATASE |
| AT1G07890
| PredictedAffinity Capture-MS | FSW = 0.0315
| Unknown | APX1 (ASCORBATE PEROXIDASE 1) L-ASCORBATE PEROXIDASE |
| AT1G15210
| PredictedAffinity Capture-MS | FSW = 0.5877
| Unknown | PDR7 (PLEIOTROPIC DRUG RESISTANCE 7) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES |
| AT5G24400
| PredictedAffinity Capture-MS | FSW = 0.2904
| Unknown | EMB2024 (EMBRYO DEFECTIVE 2024) 6-PHOSPHOGLUCONOLACTONASE/ CATALYTIC |
| AT3G16950
| PredictedAffinity Capture-MS | FSW = 0.5830
| Unknown | LPD1 (LIPOAMIDE DEHYDROGENASE 1) DIHYDROLIPOYL DEHYDROGENASE |
| AT1G74710
| PredictedAffinity Capture-MS | FSW = 0.0111
| Unknown | ISOCHORISMATE SYNTHASE 1 (ICS1) / ISOCHORISMATE MUTASE |
| AT5G65430
| PredictedAffinity Capture-MS | FSW = 0.1560
| Unknown | GRF8 (GENERAL REGULATORY FACTOR 8) PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING |
| AT3G44610
| PredictedAffinity Capture-MS | FSW = 0.2551
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
| AT5G13050
| PredictedAffinity Capture-MS | FSW = 0.5650
| Unknown | 5-FCL (5-FORMYLTETRAHYDROFOLATE CYCLOLIGASE) 5-FORMYLTETRAHYDROFOLATE CYCLO-LIGASE |
| AT3G11630
| PredictedAffinity Capture-MS | FSW = 0.4064
| Unknown | 2-CYS PEROXIREDOXIN CHLOROPLAST (BAS1) |
| AT3G06040
| PredictedAffinity Capture-MS | FSW = 0.5954
| Unknown | RIBOSOMAL PROTEIN L12 FAMILY PROTEIN |
| AT5G60390
| PredictedAffinity Capture-MS | FSW = 0.3767
| Unknown | ELONGATION FACTOR 1-ALPHA / EF-1-ALPHA |
| AT5G45420
| PredictedAffinity Capture-MS | FSW = 0.5288
| Unknown | MYB FAMILY TRANSCRIPTION FACTOR |
| AT5G23740
| PredictedAffinity Capture-MS | FSW = 0.4622
| Unknown | RPS11-BETA (RIBOSOMAL PROTEIN S11-BETA) STRUCTURAL CONSTITUENT OF RIBOSOME |
| AT3G47370
| PredictedAffinity Capture-MS | FSW = 0.1168
| Unknown | 40S RIBOSOMAL PROTEIN S20 (RPS20B) |
| AT1G27970
| PredictedAffinity Capture-MS | FSW = 0.4374
| Unknown | NTF2B (NUCLEAR TRANSPORT FACTOR 2B) RAN GTPASE BINDING / PROTEIN TRANSPORTER |
| AT3G61430
| PredictedAffinity Capture-WesternAffinity Capture-MS | FSW = 0.2130
| Unknown | PIP1A (PLASMA MEMBRANE INTRINSIC PROTEIN 1A) WATER CHANNEL |
| AT4G28950
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2400
| Unknown | ROP9 (RHO-RELATED PROTEIN FROM PLANTS 9) GTP BINDING |
| AT3G13560
| PredictedAffinity Capture-MS | FSW = 0.0962
| Unknown | GLYCOSYL HYDROLASE FAMILY 17 PROTEIN |
| AT2G47160
| PredictedAffinity Capture-MS | FSW = 0.0459
| Unknown | BOR1 (REQUIRES HIGH BORON 1) ANION EXCHANGER/ BORON TRANSPORTER |
| AT1G50310
| PredictedAffinity Capture-MS | FSW = 0.2710
| Unknown | STP9 (SUGAR TRANSPORTER 9) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER |
| AT5G43370
| PredictedAffinity Capture-MS | FSW = 0.5765
| Unknown | APT1 (ARABIDOPSIS PHOSPHATE TRANSPORTER 1) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ INORGANIC PHOSPHATE TRANSMEMBRANE TRANSPORTER/ PHOSPHATE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER |
| AT5G12480
| Predictedbiochemical | FSW = 0.0014
| Unknown | CPK7 (CALMODULIN-DOMAIN PROTEIN KINASE 7) ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE |
| AT4G24400
| PredictedAffinity Capture-MS | FSW = 0.4933
| Unknown | CIPK8 (CBL-INTERACTING PROTEIN KINASE 8) KINASE/ PROTEIN KINASE |
| AT1G20760
| PredictedAffinity Capture-MS | FSW = 0.2207
| Unknown | CALCIUM-BINDING EF HAND FAMILY PROTEIN |
| AT4G36860
| PredictedAffinity Capture-MS | FSW = 0.5430
| Unknown | ZINC ION BINDING |
| AT1G09640
| PredictedAffinity Capture-MS | FSW = 0.4290
| Unknown | ELONGATION FACTOR 1B-GAMMA PUTATIVE / EEF-1B GAMMA PUTATIVE |
| AT2G35690
| PredictedAffinity Capture-MS | FSW = 0.4264
| Unknown | ACX5 (ACYL-COA OXIDASE 5) FAD BINDING / ACYL-COA DEHYDROGENASE/ ACYL-COA OXIDASE/ ELECTRON CARRIER/ OXIDOREDUCTASE/ OXIDOREDUCTASE ACTING ON THE CH-CH GROUP OF DONORS |
| AT2G45490
| Predictedbiochemical | FSW = 0.0027
| Unknown | ATAUR3 (ATAURORA3) ATP BINDING / HISTONE KINASE(H3-S10 SPECIFIC) / PROTEIN KINASE |
| AT4G26600
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1360
| Unknown | NUCLEOLAR PROTEIN PUTATIVE |
| AT3G13445
| PredictedAffinity Capture-MS | FSW = 0.1724
| Unknown | TBP1 (TATA BINDING PROTEIN 1) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR/ BINDING |
| AT5G59870
| PredictedAffinity Capture-MS | FSW = 0.5539
| Unknown | HTA6 DNA BINDING |
| AT5G44500
| PredictedAffinity Capture-MS | FSW = 0.4862
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN ASSOCIATED PROTEIN B PUTATIVE / SNRNP-B PUTATIVE / SM PROTEIN B PUTATIVE |
| AT4G31720
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0565
| Unknown | TAFII15 (TBP-ASSOCIATED FACTOR II 15) RNA POLYMERASE II TRANSCRIPTION FACTOR/ TRANSCRIPTION FACTOR |
| AT2G23460
| PredictedAffinity Capture-MS | FSW = 0.1917
| Unknown | XLG1 (EXTRA-LARGE G-PROTEIN 1) GUANYL NUCLEOTIDE BINDING / SIGNAL TRANSDUCER |
| AT2G37470
| PredictedAffinity Capture-MS | FSW = 0.4230
| Unknown | HISTONE H2B PUTATIVE |
| AT3G60500
| PredictedAffinity Capture-MS | FSW = 0.0058
| Unknown | CER7 (ECERIFERUM 7) 3-5-EXORIBONUCLEASE/ RNA BINDING |
| AT1G34065
| PredictedAffinity Capture-MS | FSW = 0.2256
| Unknown | SAMC2 (S-ADENOSYLMETHIONINE CARRIER 2) BINDING |
| AT2G18450
| PredictedAffinity Capture-MS | FSW = 0.2740
| Unknown | SDH1-2 SUCCINATE DEHYDROGENASE |
| AT2G13650
| PredictedAffinity Capture-MS | FSW = 0.5232
| Unknown | GONST1 (GOLGI NUCLEOTIDE SUGAR TRANSPORTER 1) GDP-MANNOSE TRANSMEMBRANE TRANSPORTER/ NUCLEOTIDE-SUGAR TRANSMEMBRANE TRANSPORTER |
| AT4G30990
| PredictedAffinity Capture-MS | FSW = 0.5337
| Unknown | BINDING |
| AT3G52580
| PredictedAffinity Capture-MS | FSW = 0.6651
| Unknown | 40S RIBOSOMAL PROTEIN S14 (RPS14C) |
| AT5G41480
| PredictedAffinity Capture-MS | FSW = 0.6024
| Unknown | GLA1 (GLOBULAR ARREST1) DIHYDROFOLATE SYNTHASE |
| AT2G24040
| PredictedAffinity Capture-MS | FSW = 0.6286
| Unknown | HYDROPHOBIC PROTEIN PUTATIVE / LOW TEMPERATURE AND SALT RESPONSIVE PROTEIN PUTATIVE |
| AT3G12530
| PredictedAffinity Capture-MS | FSW = 0.6931
| Unknown | PSF2 |
| AT5G53360
| Predictedtwo hybrid | FSW = 0.0027
| Unknown | SEVEN IN ABSENTIA (SINA) FAMILY PROTEIN |
| AT3G22880
| PredictedAffinity Capture-MS | FSW = 0.1591
| Unknown | DMC1 (DISRUPTION OF MEIOTIC CONTROL 1) ATP BINDING / DNA BINDING / DNA-DEPENDENT ATPASE/ DAMAGED DNA BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING |
| AT5G47880
| PredictedAffinity Capture-MS | FSW = 0.4885
| Unknown | ERF1-1 (EUKARYOTIC RELEASE FACTOR 1-1) TRANSLATION RELEASE FACTOR |
| AT1G05650
| PredictedAffinity Capture-MS | FSW = 0.3666
| Unknown | POLYGALACTURONASE PUTATIVE / PECTINASE PUTATIVE |
| AT1G05910
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1235
| Unknown | CELL DIVISION CYCLE PROTEIN 48-RELATED / CDC48-RELATED |
| AT1G11530
| PredictedAffinity Capture-MS | FSW = 0.4291
| Unknown | ATCXXS1 (C-TERMINAL CYSTEINE RESIDUE IS CHANGED TO A SERINE 1) PROTEIN DISULFIDE ISOMERASE |
| AT1G14310
| PredictedAffinity Capture-MS | FSW = 0.2678
| Unknown | HALOACID DEHALOGENASE-LIKE HYDROLASE FAMILY PROTEIN |
| AT1G20696
| PredictedAffinity Capture-MS | FSW = 0.4397
| Unknown | HMGB3 (HIGH MOBILITY GROUP B 3) DNA BINDING / CHROMATIN BINDING / STRUCTURAL CONSTITUENT OF CHROMATIN / TRANSCRIPTION FACTOR |
| AT1G20920
| PredictedAffinity Capture-MS | FSW = 0.4469
| Unknown | DEAD BOX RNA HELICASE PUTATIVE |
| AT1G24706
| PredictedAffinity Capture-MS | FSW = 0.2141
| Unknown | UNKNOWN PROTEIN |
| AT1G33110
| PredictedAffinity Capture-MS | FSW = 0.5371
| Unknown | MATE EFFLUX FAMILY PROTEIN |
| AT1G34580
| PredictedAffinity Capture-MS | FSW = 0.1616
| Unknown | MONOSACCHARIDE TRANSPORTER PUTATIVE |
| AT1G51770
| PredictedAffinity Capture-MS | FSW = 0.5881
| Unknown | UNKNOWN PROTEIN |
| AT1G55730
| PredictedAffinity Capture-MS | FSW = 0.4628
| Unknown | ATCAX5 CALCIUMCATION ANTIPORTER/ CATIONCATION ANTIPORTER |
| AT1G62880
| PredictedAffinity Capture-MS | FSW = 0.5588
| Unknown | CORNICHON FAMILY PROTEIN |
| AT1G64480
| PredictedAffinity Capture-MS | FSW = 0.5335
| Unknown | CBL8 (CALCINEURIN B-LIKE PROTEIN 8) CALCIUM ION BINDING |
| AT1G71280
| PredictedAffinity Capture-MS | FSW = 0.5173
| Unknown | DEAD/DEAH BOX HELICASE PUTATIVE |
| AT1G79210
| PredictedAffinity Capture-MS | FSW = 0.1253
| Unknown | 20S PROTEASOME ALPHA SUBUNIT B PUTATIVE |
| AT2G16740
| PredictedAffinity Capture-MS | FSW = 0.2550
| Unknown | UBC29 (UBIQUITIN-CONJUGATING ENZYME 29) UBIQUITIN-PROTEIN LIGASE |
| AT2G21250
| PredictedAffinity Capture-MS | FSW = 0.4051
| Unknown | MANNOSE 6-PHOSPHATE REDUCTASE (NADPH-DEPENDENT) PUTATIVE |
| AT2G29390
| PredictedAffinity Capture-MS | FSW = 0.4488
| Unknown | SMO2-2 (STEROL 4-ALPHA-METHYL-OXIDASE 2-2) 4-ALPHA-METHYL-DELTA7-STEROL-4ALPHA-METHYL OXIDASE/ C-4 METHYLSTEROL OXIDASE |
| AT2G46860
| PredictedAffinity Capture-MS | FSW = 0.4862
| Unknown | ATPPA3 (ARABIDOPSIS THALIANA PYROPHOSPHORYLASE 3) INORGANIC DIPHOSPHATASE/ PYROPHOSPHATASE |
| AT2G47760
| PredictedAffinity Capture-MS | FSW = 0.1249
| Unknown | ALG3 ALPHA-13-MANNOSYLTRANSFERASE/ CATALYTIC |
| AT3G02000
| PredictedAffinity Capture-MS | FSW = 0.0656
| Unknown | ROXY1 DISULFIDE OXIDOREDUCTASE |
| AT3G05540
| PredictedAffinity Capture-MS | FSW = 0.2223
| Unknown | INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CYTOPLASM CONTAINS INTERPRO DOMAIN/S TRANSLATIONALLY CONTROLLED TUMOUR PROTEIN (INTERPROIPR018105) TRANSLATIONALLY CONTROLLED TUMOUR-ASSOCIATED TCTP (INTERPROIPR001983) MSS4/TRANSLATIONALLY CONTROLLED TUMOUR-ASSOCIATED TCTP (INTERPROIPR011323) TRANSLATIONALLY CONTROLLED TUMOUR PROTEIN CONSERVED SITE (INTERPROIPR018103) MSS4-LIKE (INTERPROIPR011057) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS TCTP (TRANSLATIONALLY CONTROLLED TUMOR PROTEIN) (TAIRAT3G166401) HAS 640 BLAST HITS TO 640 PROTEINS IN 231 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 343 FUNGI - 110 PLANTS - 105 VIRUSES - 0 OTHER EUKARYOTES - 82 (SOURCE NCBI BLINK) |
| AT3G05960
| PredictedAffinity Capture-MS | FSW = 0.4714
| Unknown | STP6 (SUGAR TRANSPORTER 6) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ MONOSACCHARIDE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER |
| AT3G12690
| PredictedAffinity Capture-MS | FSW = 0.5618
| Unknown | AGC15 (AGC KINASE 15) KINASE |
| AT3G47940
| PredictedAffinity Capture-MS | FSW = 0.1391
| Unknown | DNAJ HEAT SHOCK PROTEIN PUTATIVE |
| AT3G50880
| PredictedAffinity Capture-MS | FSW = 0.0753
| Unknown | HHH-GPD BASE EXCISION DNA REPAIR FAMILY PROTEIN |
| AT1G05785
| PredictedAffinity Capture-MS | FSW = 0.2029
| Unknown | GOT1-LIKE FAMILY PROTEIN |
| AT1G11660
| PredictedAffinity Capture-MS | FSW = 0.0336
| Unknown | HEAT SHOCK PROTEIN PUTATIVE |
| AT1G34460 | PredictedAffinity Capture-MS | FSW = 0.0988
| Unknown | CYCB15 (CYCLIN B15) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
| AT1G76720
| PredictedAffinity Capture-MS | FSW = 0.6036
| Unknown | GTP BINDING / GTPASE/ TRANSLATION INITIATION FACTOR |
| AT1G78970
| PredictedAffinity Capture-MS | FSW = 0.1198
| Unknown | LUP1 (LUPEOL SYNTHASE 1) BETA-AMYRIN SYNTHASE/ LUPEOL SYNTHASE |
| AT2G03040
| PredictedAffinity Capture-MS | FSW = 0.1802
| Unknown | TRANSMEMBRANE PROTEIN-RELATED |
| AT2G31020
| PredictedAffinity Capture-MS | FSW = 0.0960
| Unknown | ORP1A (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 1A) OXYSTEROL BINDING |
| AT2G37840
| Predictedbiochemical | FSW = 0.0069
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
| AT3G01090
| Predictedbiochemical | FSW = 0.0068
| Unknown | AKIN10 (ARABIDOPSIS SNF1 KINASE HOMOLOG 10) PROTEIN BINDING / PROTEIN KINASE |
| AT3G12200
| PredictedAffinity Capture-MS | FSW = 0.0664
| Unknown | ATNEK7 (NIMA-RELATED KINASE7) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE |
| AT3G23570
| PredictedAffinity Capture-MS | FSW = 0.6542
| Unknown | DIENELACTONE HYDROLASE FAMILY PROTEIN |
| AT3G53510
| PredictedAffinity Capture-MS | FSW = 0.3046
| Unknown | ABC TRANSPORTER FAMILY PROTEIN |
| AT3G53880
| PredictedCo-purification | FSW = 0.1074
| Unknown | ALDO/KETO REDUCTASE FAMILY PROTEIN |
| AT5G09390
| PredictedAffinity Capture-MS | FSW = 0.4008
| Unknown | CD2-BINDING PROTEIN-RELATED |
| AT5G46150
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3061
| Unknown | LEM3 (LIGAND-EFFECT MODULATOR 3) FAMILY PROTEIN / CDC50 FAMILY PROTEIN |
| AT5G54200
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.4074
| Unknown | WD-40 REPEAT FAMILY PROTEIN |
| AT5G67380
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2623
| Unknown | CKA1 (CASEIN KINASE ALPHA 1) KINASE |
| AT3G62770
| PredictedAffinity Capture-MS | FSW = 0.3908
| Unknown | ATATG18A |
| AT4G17770
| PredictedAffinity Capture-MS | FSW = 0.5532
| Unknown | ATTPS5 PROTEIN BINDING / TRANSFERASE TRANSFERRING GLYCOSYL GROUPS / TREHALOSE-PHOSPHATASE |
| AT4G26230
| PredictedAffinity Capture-MS | FSW = 0.3145
| Unknown | 60S RIBOSOMAL PROTEIN L31 (RPL31B) |
| AT4G36800
| PredictedAffinity Capture-MS | FSW = 0.1561
| Unknown | RCE1 (RUB1 CONJUGATING ENZYME 1) NEDD8 LIGASE/ SMALL CONJUGATING PROTEIN LIGASE |
| AT4G39330
| PredictedAffinity Capture-MS | FSW = 0.6213
| Unknown | CAD9 (CINNAMYL ALCOHOL DEHYDROGENASE 9) BINDING / CATALYTIC/ OXIDOREDUCTASE/ ZINC ION BINDING |
| AT5G06420
| PredictedAffinity Capture-MS | FSW = 0.2040
| Unknown | ZINC FINGER (CCCH-TYPE/C3HC4-TYPE RING FINGER) FAMILY PROTEIN |
| AT5G09630
| PredictedAffinity Capture-MS | FSW = 0.4536
| Unknown | PROTEIN BINDING / ZINC ION BINDING |
| AT5G19660
| PredictedAffinity Capture-MS | FSW = 0.4915
| Unknown | S1P (SITE-1 PROTEASE) ENDOPEPTIDASE/ SERINE-TYPE ENDOPEPTIDASE |
| AT5G19820
| PredictedAffinity Capture-MS | FSW = 0.3710
| Unknown | EMB2734 (EMBRYO DEFECTIVE 2734) BINDING / LYASE |
| AT5G41190
| PredictedAffinity Capture-MS | FSW = 0.6151
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 21 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S NIN ONE BINDING (NOB1) ZN-RIBBON LIKE (INTERPROIPR014881) D-SITE 20S PRE-RRNA NUCLEASE (INTERPROIPR017117) HAS 855 BLAST HITS TO 653 PROTEINS IN 196 SPECIES ARCHAE - 53 BACTERIA - 16 METAZOA - 335 FUNGI - 168 PLANTS - 29 VIRUSES - 10 OTHER EUKARYOTES - 244 (SOURCE NCBI BLINK) |
| AT3G12990
| PredictedAffinity Capture-MS | FSW = 0.0103
| Unknown | RRP45A (RIBONUCLEASE PH45A) 3-5-EXORIBONUCLEASE/ RNA BINDING |
| AT2G41980
| Predictedtwo hybrid | FSW = 0.0058
| Unknown | SEVEN IN ABSENTIA (SINA) FAMILY PROTEIN |
| AT1G63230
| PredictedGene fusion method | FSW = 0.0064
| Unknown | PENTATRICOPEPTIDE (PPR) REPEAT-CONTAINING PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
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