Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT4G30990 - ( binding )
108 Proteins interacs with AT4G30990Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT4G28950 | PredictedAffinity Capture-MS | FSW = 0.1904
| Class C:golgi | ROP9 (RHO-RELATED PROTEIN FROM PLANTS 9) GTP BINDING |
AT2G13650 | PredictedAffinity Capture-MS | FSW = 0.4281
| Class C:golgi | GONST1 (GOLGI NUCLEOTIDE SUGAR TRANSPORTER 1) GDP-MANNOSE TRANSMEMBRANE TRANSPORTER/ NUCLEOTIDE-SUGAR TRANSMEMBRANE TRANSPORTER |
AT4G32470 | PredictedAffinity Capture-MS | FSW = 0.4624
| Unknown | UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX 14 KDA PROTEIN PUTATIVE |
AT1G07660 | PredictedAffinity Capture-MS | FSW = 0.0046
| Unknown | HISTONE H4 |
AT2G20450 | PredictedAffinity Capture-MS | FSW = 0.3766
| Unknown | 60S RIBOSOMAL PROTEIN L14 (RPL14A) |
AT1G22780 | PredictedAffinity Capture-MS | FSW = 0.4617
| Unknown | PFL (POINTED FIRST LEAVES) RNA BINDING / NUCLEIC ACID BINDING / STRUCTURAL CONSTITUENT OF RIBOSOME |
AT1G54270 | PredictedAffinity Capture-MS | FSW = 0.0936
| Unknown | EIF4A-2 ATP-DEPENDENT HELICASE/ TRANSLATION INITIATION FACTOR |
AT3G08710 | PredictedAffinity Capture-MS | FSW = 0.1771
| Unknown | ATH9 (THIOREDOXIN H-TYPE 9) |
AT1G07930 | PredictedAffinity Capture-MS | FSW = 0.4746
| Unknown | ELONGATION FACTOR 1-ALPHA / EF-1-ALPHA |
AT3G20390 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3051
| Unknown | ENDORIBONUCLEASE L-PSP FAMILY PROTEIN |
AT3G08950 | PredictedAffinity Capture-MS | FSW = 0.5316
| Unknown | ELECTRON TRANSPORT SCO1/SENC FAMILY PROTEIN |
AT2G19860 | PredictedAffinity Capture-MS | FSW = 0.3994
| Unknown | HXK2 (HEXOKINASE 2) ATP BINDING / FRUCTOKINASE/ GLUCOKINASE/ HEXOKINASE |
AT3G19980 | PredictedAffinity Capture-MS | FSW = 0.3891
| Unknown | ATFYPP3 (FLOWER-SPECIFIC PHYTOCHROME-ASSOCIATED PROTEIN PHOSPHATASE 3) PROTEIN BINDING / PROTEIN SERINE/THREONINE KINASE/ PROTEIN SERINE/THREONINE PHOSPHATASE |
AT5G24400 | PredictedAffinity Capture-MS | FSW = 0.2539
| Unknown | EMB2024 (EMBRYO DEFECTIVE 2024) 6-PHOSPHOGLUCONOLACTONASE/ CATALYTIC |
AT3G03920 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0332
| Unknown | GAR1 RNA-BINDING REGION FAMILY PROTEIN |
AT5G65430 | PredictedAffinity Capture-MS | FSW = 0.0917
| Unknown | GRF8 (GENERAL REGULATORY FACTOR 8) PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING |
AT3G16950 | PredictedAffinity Capture-MS | FSW = 0.4984
| Unknown | LPD1 (LIPOAMIDE DEHYDROGENASE 1) DIHYDROLIPOYL DEHYDROGENASE |
AT3G19160 | PredictedAffinity Capture-MS | FSW = 0.1790
| Unknown | ATIPT8 (ATP/ADP ISOPENTENYLTRANSFERASES) ADENYLATE DIMETHYLALLYLTRANSFERASE |
AT3G44610 | PredictedAffinity Capture-MS | FSW = 0.2050
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
AT5G13050 | PredictedAffinity Capture-MS | FSW = 0.4940
| Unknown | 5-FCL (5-FORMYLTETRAHYDROFOLATE CYCLOLIGASE) 5-FORMYLTETRAHYDROFOLATE CYCLO-LIGASE |
AT3G11630 | PredictedAffinity Capture-MS | FSW = 0.3249
| Unknown | 2-CYS PEROXIREDOXIN CHLOROPLAST (BAS1) |
AT3G06040 | PredictedAffinity Capture-MS | FSW = 0.3948
| Unknown | RIBOSOMAL PROTEIN L12 FAMILY PROTEIN |
AT5G45420 | PredictedAffinity Capture-MS | FSW = 0.4760
| Unknown | MYB FAMILY TRANSCRIPTION FACTOR |
AT1G27970 | PredictedAffinity Capture-MS | FSW = 0.4177
| Unknown | NTF2B (NUCLEAR TRANSPORT FACTOR 2B) RAN GTPASE BINDING / PROTEIN TRANSPORTER |
AT3G09740 | PredictedAffinity Capture-MS | FSW = 0.1482
| Unknown | SYP71 (SYNTAXIN OF PLANTS 71) PROTEIN TRANSPORTER |
AT5G52640 | PredictedAffinity Capture-MS | FSW = 0.0126
| Unknown | ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING |
AT1G20760 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2336
| Unknown | CALCIUM-BINDING EF HAND FAMILY PROTEIN |
AT4G36860 | PredictedAffinity Capture-MS | FSW = 0.4362
| Unknown | ZINC ION BINDING |
AT5G62300 | PredictedAffinity Capture-MS | FSW = 0.3454
| Unknown | 40S RIBOSOMAL PROTEIN S20 (RPS20C) |
AT5G43370 | PredictedAffinity Capture-MS | FSW = 0.4712
| Unknown | APT1 (ARABIDOPSIS PHOSPHATE TRANSPORTER 1) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ INORGANIC PHOSPHATE TRANSMEMBRANE TRANSPORTER/ PHOSPHATE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER |
AT4G24400 | PredictedAffinity Capture-MS | FSW = 0.4054
| Unknown | CIPK8 (CBL-INTERACTING PROTEIN KINASE 8) KINASE/ PROTEIN KINASE |
AT1G09640 | PredictedAffinity Capture-MS | FSW = 0.4281
| Unknown | ELONGATION FACTOR 1B-GAMMA PUTATIVE / EEF-1B GAMMA PUTATIVE |
AT1G12920 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0111
| Unknown | ERF1-2 (EUKARYOTIC RELEASE FACTOR 1-2) TRANSLATION RELEASE FACTOR |
AT4G00520 | PredictedAffinity Capture-MS | FSW = 0.0807
| Unknown | ACYL-COA THIOESTERASE FAMILY PROTEIN |
AT5G04600 | PredictedAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.0637
| Unknown | RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN |
AT3G13445 | PredictedAffinity Capture-MS | FSW = 0.1251
| Unknown | TBP1 (TATA BINDING PROTEIN 1) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR/ BINDING |
AT5G59870 | PredictedAffinity Capture-MS | FSW = 0.4628
| Unknown | HTA6 DNA BINDING |
AT1G72440 | PredictedAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.0126
| Unknown | EDA25 (EMBRYO SAC DEVELOPMENT ARREST 25) |
AT5G44500 | PredictedAffinity Capture-MS | FSW = 0.4379
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN ASSOCIATED PROTEIN B PUTATIVE / SNRNP-B PUTATIVE / SM PROTEIN B PUTATIVE |
AT3G05060 | PredictedAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.0367
| Unknown | SAR DNA-BINDING PROTEIN PUTATIVE |
AT2G37470 | PredictedAffinity Capture-MS | FSW = 0.4057
| Unknown | HISTONE H2B PUTATIVE |
AT5G12840 | PredictedPhenotypic Enhancement | FSW = 0.0134
| Unknown | NF-YA1 (NUCLEAR FACTOR Y SUBUNIT A1) TRANSCRIPTION FACTOR |
AT4G05410 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.0989
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT5G66540 | PredictedAffinity Capture-MSAffinity Capture-Western | FSW = 0.0931
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN RRNA PROCESSING LOCATED IN CYTOSOL NUCLEOLUS NUCLEUS EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 12 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S U3 SMALL NUCLEOLAR RIBONUCLEOPROTEIN COMPLEX SUBUNIT MPP10P (INTERPROIPR012173) MPP10 PROTEIN (INTERPROIPR007151) HAS 76240 BLAST HITS TO 38667 PROTEINS IN 1479 SPECIES ARCHAE - 252 BACTERIA - 6537 METAZOA - 31185 FUNGI - 9935 PLANTS - 3937 VIRUSES - 750 OTHER EUKARYOTES - 23644 (SOURCE NCBI BLINK) |
AT1G63810 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.0613
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 21 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S NRAP PROTEIN (INTERPROIPR005554) HAS 268 BLAST HITS TO 263 PROTEINS IN 124 SPECIES ARCHAE - 3 BACTERIA - 0 METAZOA - 116 FUNGI - 89 PLANTS - 17 VIRUSES - 0 OTHER EUKARYOTES - 43 (SOURCE NCBI BLINK) |
AT1G19120 | PredictedAffinity Capture-MS | FSW = 0.0042
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE |
AT4G18040 | Predictedinteraction prediction | FSW = 0.0061
| Unknown | EIF4E (EUKARYOTIC TRANSLATION INITATION FACTOR 4E) RNA BINDING / RNA CAP BINDING / PROTEIN BINDING / TRANSLATION INITIATION FACTOR |
AT3G17465 | PredictedAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.0189
| Unknown | RPL3P (RIBOSOMAL PROTEIN L3 PLASTID) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT1G34065 | PredictedAffinity Capture-MS | FSW = 0.2239
| Unknown | SAMC2 (S-ADENOSYLMETHIONINE CARRIER 2) BINDING |
AT2G18450 | PredictedAffinity Capture-MS | FSW = 0.2342
| Unknown | SDH1-2 SUCCINATE DEHYDROGENASE |
AT3G12530 | PredictedAffinity Capture-MS | FSW = 0.4783
| Unknown | PSF2 |
AT3G52580 | PredictedAffinity Capture-MS | FSW = 0.4974
| Unknown | 40S RIBOSOMAL PROTEIN S14 (RPS14C) |
AT5G41480 | PredictedAffinity Capture-MS | FSW = 0.5196
| Unknown | GLA1 (GLOBULAR ARREST1) DIHYDROFOLATE SYNTHASE |
AT5G22100 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0754
| Unknown | RNA CYCLASE FAMILY PROTEIN |
AT2G24040 | PredictedAffinity Capture-MS | FSW = 0.5465
| Unknown | HYDROPHOBIC PROTEIN PUTATIVE / LOW TEMPERATURE AND SALT RESPONSIVE PROTEIN PUTATIVE |
AT1G56590 | Predictedtwo hybrid | FSW = 0.0090
| Unknown | CLATHRIN ADAPTOR COMPLEXES MEDIUM SUBUNIT FAMILY PROTEIN |
AT1G05910 | PredictedAffinity Capture-MS | FSW = 0.0885
| Unknown | CELL DIVISION CYCLE PROTEIN 48-RELATED / CDC48-RELATED |
AT1G11530 | PredictedAffinity Capture-MS | FSW = 0.3864
| Unknown | ATCXXS1 (C-TERMINAL CYSTEINE RESIDUE IS CHANGED TO A SERINE 1) PROTEIN DISULFIDE ISOMERASE |
AT1G20920 | PredictedAffinity Capture-MS | FSW = 0.4570
| Unknown | DEAD BOX RNA HELICASE PUTATIVE |
AT1G24706 | PredictedAffinity Capture-MS | FSW = 0.1863
| Unknown | UNKNOWN PROTEIN |
AT1G51770 | PredictedAffinity Capture-MS | FSW = 0.4587
| Unknown | UNKNOWN PROTEIN |
AT1G55730 | PredictedAffinity Capture-MS | FSW = 0.4863
| Unknown | ATCAX5 CALCIUMCATION ANTIPORTER/ CATIONCATION ANTIPORTER |
AT1G62880 | PredictedAffinity Capture-MS | FSW = 0.4708
| Unknown | CORNICHON FAMILY PROTEIN |
AT1G64480 | PredictedAffinity Capture-MS | FSW = 0.4791
| Unknown | CBL8 (CALCINEURIN B-LIKE PROTEIN 8) CALCIUM ION BINDING |
AT1G71280 | PredictedAffinity Capture-MS | FSW = 0.4229
| Unknown | DEAD/DEAH BOX HELICASE PUTATIVE |
AT2G16740 | PredictedAffinity Capture-MS | FSW = 0.2274
| Unknown | UBC29 (UBIQUITIN-CONJUGATING ENZYME 29) UBIQUITIN-PROTEIN LIGASE |
AT2G19910 | PredictedAffinity Capture-MS | FSW = 0.2637
| Unknown | RNA-DEPENDENT RNA POLYMERASE FAMILY PROTEIN |
AT2G21250 | PredictedAffinity Capture-MS | FSW = 0.4032
| Unknown | MANNOSE 6-PHOSPHATE REDUCTASE (NADPH-DEPENDENT) PUTATIVE |
AT2G37540 | PredictedAffinity Capture-MS | FSW = 0.1240
| Unknown | SHORT-CHAIN DEHYDROGENASE/REDUCTASE (SDR) FAMILY PROTEIN |
AT2G46860 | PredictedAffinity Capture-MS | FSW = 0.4076
| Unknown | ATPPA3 (ARABIDOPSIS THALIANA PYROPHOSPHORYLASE 3) INORGANIC DIPHOSPHATASE/ PYROPHOSPHATASE |
AT2G47760 | PredictedAffinity Capture-MS | FSW = 0.1105
| Unknown | ALG3 ALPHA-13-MANNOSYLTRANSFERASE/ CATALYTIC |
AT3G05960 | PredictedAffinity Capture-MS | FSW = 0.4241
| Unknown | STP6 (SUGAR TRANSPORTER 6) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ MONOSACCHARIDE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER |
AT3G12690 | PredictedAffinity Capture-MS | FSW = 0.4601
| Unknown | AGC15 (AGC KINASE 15) KINASE |
AT3G19940 | PredictedAffinity Capture-MS | FSW = 0.3963
| Unknown | SUGAR TRANSPORTER PUTATIVE |
AT3G20650 | PredictedAffinity Capture-MS | FSW = 0.3272
| Unknown | MRNA CAPPING ENZYME FAMILY PROTEIN |
AT3G30842 | PredictedAffinity Capture-MS | FSW = 0.3434
| Unknown | PDR10 (PLEIOTROPIC DRUG RESISTANCE 10) ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING |
AT3G52390 | PredictedAffinity Capture-MS | FSW = 0.5337
| Unknown | TATD-RELATED DEOXYRIBONUCLEASE FAMILY PROTEIN |
AT3G62770 | PredictedAffinity Capture-MS | FSW = 0.3795
| Unknown | ATATG18A |
AT4G17770 | PredictedAffinity Capture-MS | FSW = 0.4300
| Unknown | ATTPS5 PROTEIN BINDING / TRANSFERASE TRANSFERRING GLYCOSYL GROUPS / TREHALOSE-PHOSPHATASE |
AT4G26230 | PredictedAffinity Capture-MS | FSW = 0.2660
| Unknown | 60S RIBOSOMAL PROTEIN L31 (RPL31B) |
AT1G76720 | PredictedAffinity Capture-MS | FSW = 0.4339
| Unknown | GTP BINDING / GTPASE/ TRANSLATION INITIATION FACTOR |
AT2G03040 | PredictedAffinity Capture-MS | FSW = 0.1493
| Unknown | TRANSMEMBRANE PROTEIN-RELATED |
AT2G31020 | PredictedAffinity Capture-MS | FSW = 0.0649
| Unknown | ORP1A (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 1A) OXYSTEROL BINDING |
AT3G23570 | PredictedAffinity Capture-MS | FSW = 0.5102
| Unknown | DIENELACTONE HYDROLASE FAMILY PROTEIN |
AT3G59540 | PredictedPhenotypic Enhancement | FSW = 0.0060
| Unknown | 60S RIBOSOMAL PROTEIN L38 (RPL38B) |
AT5G67380 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1902
| Unknown | CKA1 (CASEIN KINASE ALPHA 1) KINASE |
AT4G39330 | PredictedAffinity Capture-MS | FSW = 0.5186
| Unknown | CAD9 (CINNAMYL ALCOHOL DEHYDROGENASE 9) BINDING / CATALYTIC/ OXIDOREDUCTASE/ ZINC ION BINDING |
AT5G09630 | PredictedAffinity Capture-MS | FSW = 0.4266
| Unknown | PROTEIN BINDING / ZINC ION BINDING |
AT5G17000 | PredictedAffinity Capture-MS | FSW = 0.1262
| Unknown | NADP-DEPENDENT OXIDOREDUCTASE PUTATIVE |
AT5G19820 | PredictedAffinity Capture-MS | FSW = 0.3267
| Unknown | EMB2734 (EMBRYO DEFECTIVE 2734) BINDING / LYASE |
AT5G41190 | PredictedAffinity Capture-MS | FSW = 0.4525
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 21 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S NIN ONE BINDING (NOB1) ZN-RIBBON LIKE (INTERPROIPR014881) D-SITE 20S PRE-RRNA NUCLEASE (INTERPROIPR017117) HAS 855 BLAST HITS TO 653 PROTEINS IN 196 SPECIES ARCHAE - 53 BACTERIA - 16 METAZOA - 335 FUNGI - 168 PLANTS - 29 VIRUSES - 10 OTHER EUKARYOTES - 244 (SOURCE NCBI BLINK) |
AT5G54200 | PredictedAffinity Capture-MS | FSW = 0.4278
| Unknown | WD-40 REPEAT FAMILY PROTEIN |
AT2G36930 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0149
| Unknown | ZINC FINGER (C2H2 TYPE) FAMILY PROTEIN |
AT1G17280 | PredictedAffinity Capture-MS | FSW = 0.0090
| Unknown | UBC34 (UBIQUITIN-CONJUGATING ENZYME 34) UBIQUITIN-PROTEIN LIGASE |
AT5G08420 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.0449
| Unknown | RNA BINDING |
AT4G28200 | PredictedAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.0768
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN RNA PROCESSING LOCATED IN INTRACELLULAR EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S RNA-PROCESSING PROTEIN HAT HELIX (INTERPROIPR003107) U3 SMALL NUCLEOLAR RNA-ASSOCIATED PROTEIN 6 (INTERPROIPR013949) HAS 352 BLAST HITS TO 342 PROTEINS IN 144 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 111 FUNGI - 130 PLANTS - 24 VIRUSES - 0 OTHER EUKARYOTES - 87 (SOURCE NCBI BLINK) |
AT3G12990 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.0189
| Unknown | RRP45A (RIBONUCLEASE PH45A) 3-5-EXORIBONUCLEASE/ RNA BINDING |
AT3G10530 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.0749
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT2G21440 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.0241
| Unknown | RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN |
AT2G17250 | PredictedAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.0923
| Unknown | EMB2762 (EMBRYO DEFECTIVE 2762) |
AT1G69070 | PredictedAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.0919
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 23 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S NOP14-LIKE PROTEIN (INTERPROIPR007276) HAS 64668 BLAST HITS TO 30830 PROTEINS IN 1152 SPECIES ARCHAE - 207 BACTERIA - 18692 METAZOA - 20758 FUNGI - 6782 PLANTS - 2177 VIRUSES - 523 OTHER EUKARYOTES - 15529 (SOURCE NCBI BLINK) |
AT1G31660 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.0613
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 21 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S BYSTIN (INTERPROIPR007955) HAS 370 BLAST HITS TO 362 PROTEINS IN 156 SPECIES ARCHAE - 0 BACTERIA - 7 METAZOA - 139 FUNGI - 93 PLANTS - 32 VIRUSES - 0 OTHER EUKARYOTES - 99 (SOURCE NCBI BLINK) |
AT1G15440 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.0582
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT5G64670 | PredictedAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.0096
| Unknown | RIBOSOMAL PROTEIN L15 FAMILY PROTEIN |
AT2G28820 | PredictedAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.0202
| Unknown | RIBOSOMAL PROTEIN L15 FAMILY PROTEIN |
AT1G29550 | PredictedAffinity Capture-MS | FSW = 0.0082
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR 4E PUTATIVE / EIF-4E PUTATIVE / EIF4E PUTATIVE / MRNA CAP-BINDING PROTEIN PUTATIVE |
AT5G50430 | Predictedinteraction prediction | FSW = 0.0146
| Unknown | UBC33 (UBIQUITIN-CONJUGATING ENZYME 33) UBIQUITIN-PROTEIN LIGASE |
AT5G13010 | Predictedinteraction prediction | FSW = 0.0023
| Unknown | EMB3011 (EMBRYO DEFECTIVE 3011) ATP BINDING / RNA HELICASE/ HELICASE/ NUCLEIC ACID BINDING |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454