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AT1G72440 - ( EDA25 (embryo sac development arrest 25) )

92 Proteins interacs with AT1G72440

Locus	Method	FSW	Cellular Compartment Classification (C3)	Description
AT2G18220	Experimental two hybrid	FSW = 0.5074	Unknown	INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S UNCHARACTERISED PROTEIN FAMILY UPF0120 (INTERPROIPR005343) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS RBL (REBELOTE) (TAIRAT3G555101) HAS 4846 BLAST HITS TO 3236 PROTEINS IN 249 SPECIES ARCHAE - 2 BACTERIA - 127 METAZOA - 2049 FUNGI - 594 PLANTS - 200 VIRUSES - 69 OTHER EUKARYOTES - 1805 (SOURCE NCBI BLINK)
AT3G25520	Predicted Affinity Capture-MS	FSW = 0.1896	Class C: nucleus	ATL5 (A THALIANA RIBOSOMAL PROTEIN L5) 5S RRNA BINDING / STRUCTURAL CONSTITUENT OF RIBOSOME
AT3G49910	Predicted Affinity Capture-MS	FSW = 0.1894	Class C: nucleus	60S RIBOSOMAL PROTEIN L26 (RPL26A)
AT3G09630	Predicted Affinity Capture-MS	FSW = 0.2576	Class C: nucleus	60S RIBOSOMAL PROTEIN L4/L1 (RPL4A)
AT2G42740	Predicted Affinity Capture-MS Co-expression	FSW = 0.2818	Class C: nucleus	RPL16A STRUCTURAL CONSTITUENT OF RIBOSOME
AT2G47610	Predicted Affinity Capture-MS Co-expression	FSW = 0.3392	Class C: nucleus	60S RIBOSOMAL PROTEIN L7A (RPL7AA)
AT3G49010	Predicted Affinity Capture-MS	FSW = 0.2841	Class C: nucleus	ATBBC1 (ARABIDOPSIS THALIANA BREAST BASIC CONSERVED 1) STRUCTURAL CONSTITUENT OF RIBOSOME
AT1G43170	Predicted Affinity Capture-MS Co-expression	FSW = 0.1578	Class C: nucleus	ARP1 (ARABIDOPSIS RIBOSOMAL PROTEIN 1) STRUCTURAL CONSTITUENT OF RIBOSOME
AT3G07110	Predicted Affinity Capture-MS	FSW = 0.0818	Class C: nucleus	60S RIBOSOMAL PROTEIN L13A (RPL13AA)
AT5G22440	Predicted Affinity Capture-MS	FSW = 0.3585	Class C: nucleus	60S RIBOSOMAL PROTEIN L10A (RPL10AC)
AT3G01610	Predicted Affinity Capture-MS	FSW = 0.3974	Class C: nucleus	CDC48C ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING
AT2G27710	Predicted Affinity Capture-MS Affinity Capture-MS interaction prediction	FSW = 0.2198	Class C: nucleus	60S ACIDIC RIBOSOMAL PROTEIN P2 (RPP2B)
AT3G11964	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Co-expression	FSW = 0.3694	Class C: nucleus	RNA BINDING
AT3G11510	Predicted Affinity Capture-MS	FSW = 0.2057	Class C: nucleus	40S RIBOSOMAL PROTEIN S14 (RPS14B)
AT5G39740	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.3787	Class C: nucleus	60S RIBOSOMAL PROTEIN L5 (RPL5B)
AT2G37190	Predicted Affinity Capture-MS	FSW = 0.2493	Class C: nucleus	60S RIBOSOMAL PROTEIN L12 (RPL12A)
AT5G04600	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS interaction prediction Co-expression	FSW = 0.4925	Class C: nucleus	RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN
AT4G25630	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS interaction prediction Co-expression	FSW = 0.2793	Class C: nucleus	FIB2 (FIBRILLARIN 2) SNORNA BINDING
AT1G74060	Predicted Affinity Capture-MS	FSW = 0.1934	Class C: nucleus	60S RIBOSOMAL PROTEIN L6 (RPL6B)
AT4G26600	Predicted Affinity Capture-MS Affinity Capture-MS Co-expression	FSW = 0.2108	Class C: nucleus	NUCLEOLAR PROTEIN PUTATIVE
AT5G47670	Predicted in vitro two hybrid	FSW = 0.0114	Class C: nucleus	NF-YB6 (NUCLEAR FACTOR Y SUBUNIT B6) TRANSCRIPTION ACTIVATOR/ TRANSCRIPTION ACTIVATOR BINDING / TRANSCRIPTION FACTOR
AT3G23620	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS interaction prediction Co-expression	FSW = 0.4467	Class C: nucleus	BRIX DOMAIN-CONTAINING PROTEIN
AT4G17390	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.3614	Class C: nucleus	60S RIBOSOMAL PROTEIN L15 (RPL15B)
AT4G14540	Predicted in vitro two hybrid	FSW = 0.0112	Class C: nucleus	NF-YB3 (NUCLEAR FACTOR Y SUBUNIT B3) TRANSCRIPTION FACTOR
AT5G54910	Predicted Affinity Capture-MS Co-expression	FSW = 0.0977	Class C: nucleus	DEAD/DEAH BOX HELICASE PUTATIVE
AT5G55920	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS interaction prediction Co-expression	FSW = 0.3972	Class C: nucleus	NUCLEOLAR PROTEIN PUTATIVE
AT3G16810	Predicted Affinity Capture-MS	FSW = 0.5009	Class C: nucleus	APUM24 (ARABIDOPSIS PUMILIO 24) RNA BINDING / BINDING
AT3G58660	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS interaction prediction Co-expression	FSW = 0.4381	Class C: nucleus	60S RIBOSOMAL PROTEIN-RELATED
AT3G62310	Predicted Affinity Capture-MS	FSW = 0.1869	Class C: nucleus	RNA HELICASE PUTATIVE
AT3G18600	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Co-expression	FSW = 0.1861	Class C: nucleus	DEAD/DEAH BOX HELICASE PUTATIVE
AT3G55620	Predicted Affinity Capture-Western	FSW = 0.3556	Class C: nucleus	EMB1624 (EMBRYO DEFECTIVE 1624) RIBOSOME BINDING / TRANSLATION INITIATION FACTOR
AT1G23290	Predicted Affinity Capture-MS	FSW = 0.0661	Class C: nucleus	RPL27AB STRUCTURAL CONSTITUENT OF RIBOSOME
AT4G22380	Predicted Affinity Capture-MS	FSW = 0.0883	Class C: nucleus	RIBOSOMAL PROTEIN L7AE/L30E/S12E/GADD45 FAMILY PROTEIN
AT5G15550	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS interaction prediction Co-expression	FSW = 0.4221	Class C: nucleus	TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT5G20160	Predicted interaction prediction Co-expression	FSW = 0.0264	Class C: nucleus	RIBOSOMAL PROTEIN L7AE/L30E/S12E/GADD45 FAMILY PROTEIN
AT2G36160	Predicted Affinity Capture-MS Co-expression	FSW = 0.0446	Unknown	40S RIBOSOMAL PROTEIN S14 (RPS14A)
AT2G01250	Predicted Affinity Capture-MS	FSW = 0.0672	Unknown	60S RIBOSOMAL PROTEIN L7 (RPL7B)
AT1G22780	Predicted Affinity Capture-MS	FSW = 0.0233	Unknown	PFL (POINTED FIRST LEAVES) RNA BINDING / NUCLEIC ACID BINDING / STRUCTURAL CONSTITUENT OF RIBOSOME
AT1G07770	Predicted Affinity Capture-MS	FSW = 0.2260	Unknown	RPS15A (RIBOSOMAL PROTEIN S15A) STRUCTURAL CONSTITUENT OF RIBOSOME
AT5G27850	Predicted Affinity Capture-MS	FSW = 0.1668	Unknown	60S RIBOSOMAL PROTEIN L18 (RPL18C)
AT1G34030	Predicted Affinity Capture-MS	FSW = 0.0878	Unknown	40S RIBOSOMAL PROTEIN S18 (RPS18B)
AT1G18540	Predicted Affinity Capture-MS Co-expression	FSW = 0.0424	Unknown	60S RIBOSOMAL PROTEIN L6 (RPL6A)
AT3G06530	Predicted Affinity Capture-MS	FSW = 0.1160	Unknown	BINDING
AT1G29900	Predicted Affinity Capture-MS	FSW = 0.0061	Unknown	CARB (CARBAMOYL PHOSPHATE SYNTHETASE B) ATP BINDING / CARBAMOYL-PHOSPHATE SYNTHASE/ CATALYTIC
AT3G13580	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.4163	Unknown	60S RIBOSOMAL PROTEIN L7 (RPL7D)
AT1G06380	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Co-expression	FSW = 0.3819	Unknown	RIBOSOMAL PROTEIN-RELATED
AT1G70600	Predicted Affinity Capture-MS	FSW = 0.2541	Unknown	STRUCTURAL CONSTITUENT OF RIBOSOME
AT1G76810	Predicted Affinity Capture-MS	FSW = 0.1523	Unknown	EUKARYOTIC TRANSLATION INITIATION FACTOR 2 FAMILY PROTEIN / EIF-2 FAMILY PROTEIN
AT1G41880	Predicted Affinity Capture-MS	FSW = 0.1438	Unknown	60S RIBOSOMAL PROTEIN L35A (RPL35AB)
AT2G37600	Predicted Affinity Capture-MS	FSW = 0.3091	Unknown	60S RIBOSOMAL PROTEIN L36 (RPL36A)
AT3G53430	Predicted Affinity Capture-MS	FSW = 0.1135	Unknown	60S RIBOSOMAL PROTEIN L12 (RPL12B)
AT2G19740	Predicted Affinity Capture-MS	FSW = 0.0563	Unknown	60S RIBOSOMAL PROTEIN L31 (RPL31A)
AT2G40360	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS interaction prediction Co-expression	FSW = 0.3556	Unknown	TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT4G30990	Predicted Affinity Capture-MS Affinity Capture-MS interaction prediction Co-expression	FSW = 0.0126	Unknown	BINDING
AT1G50920	Predicted Affinity Capture-MS	FSW = 0.4348	Unknown	GTP-BINDING PROTEIN-RELATED
AT3G22660	Predicted Affinity Capture-MS	FSW = 0.3777	Unknown	RRNA PROCESSING PROTEIN-RELATED
AT5G18380	Predicted Affinity Capture-MS	FSW = 0.0247	Unknown	40S RIBOSOMAL PROTEIN S16 (RPS16C)
AT1G61580	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.4431	Unknown	RPL3B (R-PROTEIN L3 B) STRUCTURAL CONSTITUENT OF RIBOSOME
AT5G56710	Predicted Affinity Capture-MS	FSW = 0.2406	Unknown	60S RIBOSOMAL PROTEIN L31 (RPL31C)
AT1G59760	Predicted Affinity Capture-MS	FSW = 0.1035	Unknown	ATP-DEPENDENT RNA HELICASE PUTATIVE
AT1G72320	Predicted Affinity Capture-MS	FSW = 0.1110	Unknown	APUM23 (ARABIDOPSIS PUMILIO 23) RNA BINDING / BINDING
AT2G21440	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS interaction prediction Co-expression	FSW = 0.5435	Unknown	RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN
AT2G40700	Predicted Affinity Capture-MS Co-expression	FSW = 0.1258	Unknown	DEAD/DEAH BOX HELICASE PUTATIVE (RH17)
AT3G15460	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS interaction prediction Co-expression	FSW = 0.4229	Unknown	BRIX DOMAIN-CONTAINING PROTEIN
AT3G16840	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS interaction prediction Co-expression	FSW = 0.3681	Unknown	ATP BINDING / ATP-DEPENDENT HELICASE/ HELICASE/ NUCLEIC ACID BINDING
AT5G14520	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS interaction prediction Co-expression	FSW = 0.4020	Unknown	PESCADILLO-RELATED
AT5G20600	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.3484	Unknown	FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN RRNA PROCESSING LOCATED IN PRERIBOSOME SMALL SUBUNIT PRECURSOR EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S NUCLEOLAR NOP52 (INTERPROIPR010301) HAS 444 BLAST HITS TO 431 PROTEINS IN 151 SPECIES ARCHAE - 0 BACTERIA - 10 METAZOA - 196 FUNGI - 114 PLANTS - 27 VIRUSES - 0 OTHER EUKARYOTES - 97 (SOURCE NCBI BLINK)
AT5G61770	Predicted Affinity Capture-MS Affinity Capture-MS interaction prediction Co-expression	FSW = 0.3087	Unknown	PPAN (PETER PAN-LIKE PROTEIN)
AT1G79150	Predicted co-fractionation Co-fractionation co-fractionation Co-fractionation Affinity Capture-MS Co-expression	FSW = 0.3447	Unknown	BINDING
AT2G17250	Predicted co-fractionation Co-fractionation co-fractionation Co-fractionation Co-expression	FSW = 0.0802	Unknown	EMB2762 (EMBRYO DEFECTIVE 2762)
AT2G34357	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS interaction prediction Co-expression	FSW = 0.2728	Unknown	BINDING
AT3G18740	Predicted Affinity Capture-MS	FSW = 0.3190	Unknown	60S RIBOSOMAL PROTEIN L30 (RPL30C)
AT3G24830	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.3009	Unknown	60S RIBOSOMAL PROTEIN L13A (RPL13AB)
AT3G46960	Predicted Phenotypic Suppression Phenotypic Suppression interaction prediction Co-expression	FSW = 0.1097	Unknown	ATP BINDING / ATP-DEPENDENT HELICASE/ HELICASE/ HYDROLASE ACTING ON ACID ANHYDRIDES IN PHOSPHORUS-CONTAINING ANHYDRIDES / NUCLEIC ACID BINDING
AT3G61620	Predicted Phenotypic Suppression interaction prediction Co-expression	FSW = 0.0373	Unknown	RRP41 3-5-EXORIBONUCLEASE/ RNA BINDING
AT4G01560	Predicted Affinity Capture-MS	FSW = 0.4567	Unknown	MEE49 (MATERNAL EFFECT EMBRYO ARREST 49)
AT4G15770	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS interaction prediction Co-expression	FSW = 0.3525	Unknown	RNA BINDING / PROTEIN BINDING
AT4G16630	Predicted Affinity Capture-MS	FSW = 0.4440	Unknown	DEAD/DEAH BOX HELICASE PUTATIVE (RH28)
AT4G30991	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.0716	Unknown	DEAD/DEAH BOX HELICASE PUTATIVE (RH28)
AT4G34910	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS interaction prediction Co-expression	FSW = 0.2700	Unknown	DEAD/DEAH BOX HELICASE PUTATIVE (RH16)
AT5G05450	Predicted Affinity Capture-MS	FSW = 0.4178	Unknown	DEAD/DEAH BOX HELICASE PUTATIVE (RH18)
AT5G13570	Predicted Affinity Capture-MS interaction prediction	FSW = 0.0249	Unknown	DCP2 (DECAPPING 2) HYDROLASE/ M7G(5)PPPN DIPHOSPHATASE/ MRNA BINDING / PROTEIN HOMODIMERIZATION
AT5G38890	Predicted Phenotypic Suppression	FSW = 0.0219	Unknown	EXORIBONUCLEASE-RELATED
AT5G46840	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS interaction prediction	FSW = 0.3605	Unknown	RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN
AT5G65900	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS interaction prediction Co-expression	FSW = 0.4476	Unknown	DEAD/DEAH BOX HELICASE PUTATIVE
AT1G21160	Predicted Affinity Capture-MS	FSW = 0.1773	Unknown	GTP BINDING / GTPASE/ TRANSLATION INITIATION FACTOR
AT1G52930	Predicted Affinity Capture-MS Affinity Capture-MS Co-expression	FSW = 0.3550	Unknown	BRIX DOMAIN-CONTAINING PROTEIN
AT3G48960	Predicted Affinity Capture-MS	FSW = 0.0618	Unknown	60S RIBOSOMAL PROTEIN L13 (RPL13C)
AT1G36240	Predicted Affinity Capture-MS	FSW = 0.0676	Unknown	60S RIBOSOMAL PROTEIN L30 (RPL30A)
AT1G07070	Predicted Affinity Capture-MS	FSW = 0.0314	Unknown	60S RIBOSOMAL PROTEIN L35A (RPL35AA)
AT1G29965	Predicted Affinity Capture-MS	FSW = 0.1678	Unknown	60S RIBOSOMAL PROTEIN L18A (RPL18AA)
AT4G12600	Predicted Affinity Capture-MS Co-expression	FSW = 0.0792	Unknown	RIBOSOMAL PROTEIN L7AE/L30E/S12E/GADD45 FAMILY PROTEIN

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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from

Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment

Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment

Class C: Same as Class A but the PPI is predicted

Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB

Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454

Welcome to AtPIN

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AT1G72440 - ( EDA25 (embryo sac development arrest 25) )

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