Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT4G12600 - ( ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein )
23 Proteins interacs with AT4G12600Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT4G16720 | PredictedEnriched domain pairGene neighbors methodCo-expression | FSW = 0.0847
| Unknown | 60S RIBOSOMAL PROTEIN L15 (RPL15A) |
AT1G20960 | PredictedCo-purificationAffinity Capture-MSCo-purification | FSW = 0.0415
| Unknown | EMB1507 (EMBRYO DEFECTIVE 1507) ATP BINDING / ATP-DEPENDENT HELICASE/ HELICASE/ NUCLEIC ACID BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING |
AT4G25630 | Predictedtwo hybridCo-expression | FSW = 0.1069
| Unknown | FIB2 (FIBRILLARIN 2) SNORNA BINDING |
AT2G41500 | PredictedAffinity Capture-MS | FSW = 0.1275
| Unknown | EMB2776 NUCLEOTIDE BINDING |
AT1G72440 | PredictedAffinity Capture-MSCo-expression | FSW = 0.0792
| Unknown | EDA25 (EMBRYO SAC DEVELOPMENT ARREST 25) |
AT5G08180 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.1739
| Unknown | RIBOSOMAL PROTEIN L7AE/L30E/S12E/GADD45 FAMILY PROTEIN |
AT4G17390 | PredictedEnriched domain pairGene neighbors methodCo-expression | FSW = 0.0533
| Unknown | 60S RIBOSOMAL PROTEIN L15 (RPL15B) |
AT3G05060 | PredictedAffinity Capture-MStwo hybridCo-expression | FSW = 0.0596
| Unknown | SAR DNA-BINDING PROTEIN PUTATIVE |
AT1G56110 | PredictedAffinity Capture-MSAffinity Capture-Westerntwo hybridCo-expression | FSW = 0.1143
| Unknown | NOP56 (ARABIDOPSIS HOMOLOG OF NUCLEOLAR PROTEIN NOP56) |
AT1G04510 | PredictedCo-purificationCo-expression | FSW = 0.0345
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT4G22380 | PredictedGene fusion methodGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.5528
| Unknown | RIBOSOMAL PROTEIN L7AE/L30E/S12E/GADD45 FAMILY PROTEIN |
AT5G20160 | PredictedGene fusion methodPhylogenetic profile methodCo-expression | FSW = 0.1326
| Unknown | RIBOSOMAL PROTEIN L7AE/L30E/S12E/GADD45 FAMILY PROTEIN |
AT5G44740 | PredictedAffinity Capture-MS | FSW = 0.0234
| Unknown | POLH (Y-FAMILT DNA POLYMERASE H) DNA-DIRECTED DNA POLYMERASE |
AT5G27740 | PredictedAffinity Capture-MS | FSW = 0.0212
| Unknown | EMB2775 (EMBRYO DEFECTIVE 2775) DNA BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING |
AT5G13780 | PredictedAffinity Capture-MSCo-expression | FSW = 0.0191
| Unknown | GCN5-RELATED N-ACETYLTRANSFERASE PUTATIVE |
AT4G26070 | PredictedAffinity Capture-MS | FSW = 0.0476
| Unknown | MEK1 (MAP KINASE/ ERK KINASE 1) MAP KINASE KINASE/ KINASE/ PROTEIN BINDING |
AT3G46960 | PredictedAffinity Capture-MS | FSW = 0.1091
| Unknown | ATP BINDING / ATP-DEPENDENT HELICASE/ HELICASE/ HYDROLASE ACTING ON ACID ANHYDRIDES IN PHOSPHORUS-CONTAINING ANHYDRIDES / NUCLEIC ACID BINDING |
AT3G11910 | PredictedAffinity Capture-MS | FSW = 0.0486
| Unknown | UBP13 (UBIQUITIN-SPECIFIC PROTEASE 13) UBIQUITIN THIOLESTERASE/ UBIQUITIN-SPECIFIC PROTEASE |
AT2G22425 | PredictedAffinity Capture-MS | FSW = 0.0147
| Unknown | PEPTIDASE |
AT1G37150 | PredictedAffinity Capture-MS | FSW = 0.0615
| Unknown | HCS2 (HOLOCARBOXYLASE SYNTHETASE 2) BIOTIN-[ACETYL-COA-CARBOXYLASE] LIGASE/ CATALYTIC |
AT1G31970 | PredictedAffinity Capture-MS | FSW = 0.1500
| Unknown | STRS1 (STRESS RESPONSE SUPPRESSOR 1) ATP BINDING / ATP-DEPENDENT HELICASE/ HELICASE/ NUCLEIC ACID BINDING |
AT5G02530 | PredictedAffinity Capture-MS | FSW = 0.0295
| Unknown | RNA AND EXPORT FACTOR-BINDING PROTEIN PUTATIVE |
AT1G72320 | PredictedAffinity Capture-MS | FSW = 0.1610
| Unknown | APUM23 (ARABIDOPSIS PUMILIO 23) RNA BINDING / BINDING |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454