Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G44740 - ( POLH (Y-FAMILT DNA POLYMERASE H) DNA-directed DNA polymerase )
53 Proteins interacs with AT5G44740Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT1G07370 | Experimentalpull downtwo hybrid | FSW = 0.0456
| Unknown | PCNA1 (PROLIFERATING CELLULAR NUCLEAR ANTIGEN) DNA BINDING / DNA POLYMERASE PROCESSIVITY FACTOR/ PROTEIN BINDING |
AT2G29570 | Experimentalpull downtwo hybrid | FSW = 0.0220
| Unknown | PCNA2 (PROLIFERATING CELL NUCLEAR ANTIGEN 2) DNA BINDING / DNA POLYMERASE PROCESSIVITY FACTOR |
YBR088C | Experimentaltwo hybrid | FSW = 0.0714
| Unknown | PCNA2 (PROLIFERATING CELL NUCLEAR ANTIGEN 2) DNA BINDING / DNA POLYMERASE PROCESSIVITY FACTOR |
AT4G01840 | PredictedAffinity Capture-MS | FSW = 0.0514
| Unknown | KCO5 (CA2+ ACTIVATED OUTWARD RECTIFYING K+ CHANNEL 5) OUTWARD RECTIFIER POTASSIUM CHANNEL |
AT3G62870 | Predictedsynthetic growth defect | FSW = 0.0116
| Unknown | 60S RIBOSOMAL PROTEIN L7A (RPL7AB) |
AT4G28390 | Predictedbiochemical | FSW = 0.0092
| Unknown | AAC3 (ADP/ATP CARRIER 3) ATPADP ANTIPORTER/ BINDING |
AT3G48170 | Predictedbiochemicalbiochemical | FSW = 0.0085
| Unknown | ALDH10A9 3-CHLOROALLYL ALDEHYDE DEHYDROGENASE/ OXIDOREDUCTASE |
AT1G48850 | Predictedbiochemical | FSW = 0.0130
| Unknown | EMB1144 (EMBRYO DEFECTIVE 1144) CHORISMATE SYNTHASE |
AT5G47690 | Predictedtwo hybridSynthetic Rescue | FSW = 0.0613
| Unknown | BINDING |
AT3G56160 | Predictedbiochemical | FSW = 0.0257
| Unknown | BILE ACIDSODIUM SYMPORTER |
AT1G10070 | PredictedPhenotypic Enhancement | FSW = 0.0230
| Unknown | ATBCAT-2 (ARABIDOPSIS THALIANA BRANCHED-CHAIN AMINO ACID TRANSAMINASE 2) BRANCHED-CHAIN-AMINO-ACID TRANSAMINASE/ CATALYTIC |
AT3G29320 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0332
| Unknown | GLUCAN PHOSPHORYLASE PUTATIVE |
AT3G06530 | Predictedbiochemical | FSW = 0.0093
| Unknown | BINDING |
AT2G20360 | Predictedtwo hybridtwo hybrid | FSW = 0.0317
| Unknown | BINDING / CATALYTIC/ COENZYME BINDING |
AT4G36490 | Predictedbiochemical | FSW = 0.0197
| Unknown | SFH12 (SEC14-LIKE 12) PHOSPHATIDYLINOSITOL TRANSPORTER/ TRANSPORTER |
AT3G19960 | Predictedbiochemical | FSW = 0.0168
| Unknown | ATM1 (ARABIDOPSIS THALIANA MYOSIN 1) MOTOR |
AT1G16890 | PredictedPhenotypic Enhancement | FSW = 0.0730
| Unknown | UBIQUITIN-CONJUGATING ENZYME PUTATIVE |
AT3G47960 | PredictedAffinity Capture-MS | FSW = 0.0180
| Unknown | PROTON-DEPENDENT OLIGOPEPTIDE TRANSPORT (POT) FAMILY PROTEIN |
AT2G30260 | Predictedbiochemical | FSW = 0.0099
| Unknown | U2B (U2 SMALL NUCLEAR RIBONUCLEOPROTEIN B) RNA BINDING / NUCLEIC ACID BINDING / NUCLEOTIDE BINDING |
AT5G19310 | Predictedbiochemical | FSW = 0.0030
| Unknown | HOMEOTIC GENE REGULATOR PUTATIVE |
AT4G02070 | Predictedinterologs mapping | FSW = 0.0533
| Unknown | MSH6 (MUTS HOMOLOG 6) DAMAGED DNA BINDING |
AT5G22750 | PredictedPhenotypic Enhancement | FSW = 0.0779
| Unknown | RAD5 ATP BINDING / ATP-DEPENDENT HELICASE/ DNA BINDING / HELICASE/ HYDROLASE ACTING ON ACID ANHYDRIDES IN PHOSPHORUS-CONTAINING ANHYDRIDES / NUCLEIC ACID BINDING / PROTEIN BINDING / ZINC ION BINDING |
AT1G28460 | Predictedinterologs mapping | FSW = 0.0162
| Unknown | AGL59 (AGAMOUS-LIKE 59) DNA BINDING / TRANSCRIPTION FACTOR |
AT4G12590 | Predictedbiochemical | FSW = 0.0150
| Unknown | UNKNOWN PROTEIN |
AT2G03120 | Predictedbiochemical | FSW = 0.0235
| Unknown | ATSPP (ARABIDOPSIS SIGNAL PEPTIDE PEPTIDASE) ASPARTIC-TYPE ENDOPEPTIDASE |
AT5G05490 | PredictedSynthetic Lethality | FSW = 0.1500
| Unknown | SYN1 (SYNAPTIC 1) |
AT3G25980 | PredictedSynthetic Rescue | FSW = 0.0114
| Unknown | MITOTIC SPINDLE CHECKPOINT PROTEIN PUTATIVE (MAD2) |
AT1G02970 | Predictedbiochemical | FSW = 0.0130
| Unknown | WEE1 (ARABIDOPSIS WEE1 KINASE HOMOLOG) KINASE/ PROTEIN KINASE |
AT1G11530 | Predictedbiochemical | FSW = 0.0037
| Unknown | ATCXXS1 (C-TERMINAL CYSTEINE RESIDUE IS CHANGED TO A SERINE 1) PROTEIN DISULFIDE ISOMERASE |
AT1G15240 | Predictedbiochemical | FSW = 0.0119
| Unknown | PHOX (PX) DOMAIN-CONTAINING PROTEIN |
AT1G55060 | Predictedtwo hybridAffinity Capture-Western | FSW = 0.0115
| Unknown | UBQ12 (UBIQUITIN 12) PROTEIN BINDING |
AT1G55810 | Predictedbiochemical | FSW = 0.0041
| Unknown | URACIL PHOSPHORIBOSYLTRANSFERASE PUTATIVE / UMP PYROPHOSPHORYLASE PUTATIVE / UPRTASE PUTATIVE |
AT1G72320 | Predictedbiochemical | FSW = 0.0297
| Unknown | APUM23 (ARABIDOPSIS PUMILIO 23) RNA BINDING / BINDING |
AT2G03690 | Predictedbiochemical | FSW = 0.0197
| Unknown | COENZYME Q BIOSYNTHESIS COQ4 FAMILY PROTEIN / UBIQUINONE BIOSYNTHESIS COQ4 FAMILY PROTEIN |
AT2G05790 | Predictedbiochemical | FSW = 0.0357
| Unknown | GLYCOSYL HYDROLASE FAMILY 17 PROTEIN |
AT2G21250 | Predictedbiochemical | FSW = 0.0058
| Unknown | MANNOSE 6-PHOSPHATE REDUCTASE (NADPH-DEPENDENT) PUTATIVE |
AT2G25100 | Predictedbiochemical | FSW = 0.0110
| Unknown | RIBONUCLEASE HII FAMILY PROTEIN |
AT2G32220 | Predictedbiochemical | FSW = 0.0180
| Unknown | 60S RIBOSOMAL PROTEIN L27 (RPL27A) |
AT2G36060 | Predictedbiochemical | FSW = 0.0545
| Unknown | UBIQUITIN-CONJUGATING ENZYME FAMILY PROTEIN |
AT3G03340 | Predictedtwo hybridtwo hybridAffinity Capture-WesternReconstituted Complex | FSW = 0.0216
| Unknown | UNE6 (UNFERTILIZED EMBRYO SAC 6) |
AT5G17000 | Predictedbiochemical | FSW = 0.0027
| Unknown | NADP-DEPENDENT OXIDOREDUCTASE PUTATIVE |
AT2G27120 | PredictedSynthetic Rescue | FSW = 0.0243
| Unknown | TIL2 (TILTED 2) DNA BINDING / DNA-DIRECTED DNA POLYMERASE/ NUCLEIC ACID BINDING / NUCLEOTIDE BINDING / ZINC ION BINDING |
AT5G15540 | PredictedSynthetic Lethality | FSW = 0.0770
| Unknown | EMB2773 (EMBRYO DEFECTIVE 2773) BINDING / PROTEIN BINDING / ZINC ION BINDING |
AT4G16970 | Predictedsynthetic growth defect | FSW = 0.0393
| Unknown | ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT3G01090 | PredictedAffinity Capture-MS | FSW = 0.0093
| Unknown | AKIN10 (ARABIDOPSIS SNF1 KINASE HOMOLOG 10) PROTEIN BINDING / PROTEIN KINASE |
AT4G12600 | PredictedAffinity Capture-MS | FSW = 0.0234
| Unknown | RIBOSOMAL PROTEIN L7AE/L30E/S12E/GADD45 FAMILY PROTEIN |
AT4G16360 | PredictedAffinity Capture-MS | FSW = 0.0453
| Unknown | AMP-ACTIVATED PROTEIN KINASE |
AT1G09020 | PredictedAffinity Capture-MS | FSW = 0.0249
| Unknown | SNF4 (HOMOLOG OF YEAST SUCROSE NONFERMENTING 4) PROTEIN KINASE ACTIVATOR |
AT4G02460 | Predictedinterologs mapping | FSW = 0.0480
| Unknown | PMS1 (POSTMEIOTIC SEGREGATION 1) ATP BINDING / MISMATCHED DNA BINDING |
AT1G67500 | PredictedPhenotypic EnhancementPhenotypic EnhancementPhenotypic Enhancement | FSW = 0.0700
| Unknown | ATREV3 (ARABIDOPSIS THALIANA RECOVERY PROTEIN 3) DNA BINDING / DNA-DIRECTED DNA POLYMERASE |
AT1G23260 | PredictedPhenotypic EnhancementPhenotypic EnhancementPhenotypic Enhancement | FSW = 0.0898
| Unknown | MMZ1 (MMS ZWEI HOMOLOGUE 1) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
AT4G25120 | PredictedPhenotypic Enhancement | FSW = 0.0306
| Unknown | ATP BINDING / ATP-DEPENDENT DNA HELICASE/ DNA BINDING / HYDROLASE |
AT1G21710 | PredictedPhenotypic EnhancementPhenotypic Enhancement | FSW = 0.0409
| Unknown | OGG1 (8-OXOGUANINE-DNA GLYCOSYLASE 1) OXIDIZED PURINE BASE LESION DNA N-GLYCOSYLASE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454