Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G21710 - ( OGG1 (8-OXOGUANINE-DNA GLYCOSYLASE 1) oxidized purine base lesion DNA N-glycosylase )
22 Proteins interacs with AT1G21710Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G11630 | PredictedPhenotypic EnhancementPhenotypic Enhancement | FSW = 0.0753
| Unknown | 2-CYS PEROXIREDOXIN CHLOROPLAST (BAS1) |
AT5G53480 | PredictedAffinity Capture-MS | FSW = 0.0250
| Unknown | IMPORTIN BETA-2 PUTATIVE |
AT3G18524 | PredictedPhenotypic EnhancementCo-expression | FSW = 0.0871
| Unknown | MSH2 (MUTS HOMOLOG 2) ATP BINDING / DAMAGED DNA BINDING / MISMATCHED DNA BINDING / PROTEIN BINDING |
AT4G02070 | PredictedPhenotypic EnhancementPhenotypic EnhancementPhenotypic EnhancementCo-expression | FSW = 0.1757
| Unknown | MSH6 (MUTS HOMOLOG 6) DAMAGED DNA BINDING |
AT4G30220 | PredictedAffinity Capture-MS | FSW = 0.0382
| Unknown | RUXF (SMALL NUCLEAR RIBONUCLEOPROTEIN F) |
AT3G06720 | PredictedAffinity Capture-MS | FSW = 0.0488
| Unknown | IMPA-1 (IMPORTIN ALPHA ISOFORM 1) BINDING / PROTEIN TRANSPORTER |
AT1G05055 | PredictedPhenotypic Enhancement | FSW = 0.0364
| Unknown | GTF2H2 (GENERAL TRANSCRIPTION FACTOR IIH 2) GENERAL RNA POLYMERASE II TRANSCRIPTION FACTOR |
AT1G07370 | PredictedPhenotypic Suppression | FSW = 0.0885
| Unknown | PCNA1 (PROLIFERATING CELLULAR NUCLEAR ANTIGEN) DNA BINDING / DNA POLYMERASE PROCESSIVITY FACTOR/ PROTEIN BINDING |
AT5G22100 | Predictedtwo hybridinteraction prediction | FSW = 0.0278
| Unknown | RNA CYCLASE FAMILY PROTEIN |
AT1G80420 | PredictedReconstituted Complextwo hybrid | FSW = 0.0395
| Unknown | DNA REPAIR PROTEIN PUTATIVE (XRCC1) |
AT1G04020 | PredictedPhenotypic Enhancement | FSW = 0.0769
| Unknown | BARD1 (BREAST CANCER ASSOCIATED RING 1) DNA BINDING / TRANSCRIPTION COACTIVATOR |
AT1G49980 | PredictedPhenotypic EnhancementPhenotypic Enhancement | FSW = 0.0741
| Unknown | DNA-DIRECTED DNA POLYMERASE/ DAMAGED DNA BINDING |
AT1G59890 | PredictedPhenotypic Enhancement | FSW = 0.0411
| Unknown | SNL5 (SIN3-LIKE 5) |
AT5G23290 | PredictedPhenotypic Enhancement | FSW = 0.0101
| Unknown | PDF5 (PREFOLDIN 5) UNFOLDED PROTEIN BINDING |
AT5G53770 | PredictedPhenotypic Enhancement | FSW = 0.0151
| Unknown | NUCLEOTIDYLTRANSFERASE FAMILY PROTEIN |
AT2G02760 | PredictedPhenotypic Enhancement | FSW = 0.0414
| Unknown | ATUBC2 (UBIQUITING-CONJUGATING ENZYME 2) UBIQUITIN-PROTEIN LIGASE |
AT2G31450 | PredictedPhenotypic Suppression | FSW = 0.1880
| Unknown | ENDONUCLEASE-RELATED |
AT3G10070 | PredictedPhenotypic Enhancement | FSW = 0.0071
| Unknown | TAF12 (TBP-ASSOCIATED FACTOR 12) DNA BINDING / TRANSCRIPTION INITIATION FACTOR |
AT1G02690 | PredictedAffinity Capture-MSCo-expression | FSW = 0.0293
| Unknown | IMPA-6 (IMPORTIN ALPHA ISOFORM 6) BINDING / PROTEIN TRANSPORTER |
AT5G44740 | PredictedPhenotypic EnhancementPhenotypic Enhancement | FSW = 0.0409
| Unknown | POLH (Y-FAMILT DNA POLYMERASE H) DNA-DIRECTED DNA POLYMERASE |
AT1G14400 | PredictedPhenotypic Enhancement | FSW = 0.0248
| Unknown | UBC1 (UBIQUITIN CARRIER PROTEIN 1) UBIQUITIN-PROTEIN LIGASE |
AT1G05900 | PredictedPhenotypic SuppressionEnriched domain pairCo-expression | FSW = 0.0775
| Unknown | ENDONUCLEASE-RELATED |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454