Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Welcome to AtPIN
AtPIN will be upgraded. Please send your suggestions here
AT1G05055 - ( GTF2H2 (GENERAL TRANSCRIPTION FACTOR IIH 2) general RNA polymerase II transcription factor )
34 Proteins interacs with AT1G05055Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT1G03190 | Experimentaltwo hybrid | FSW = 0.2647
| Class A:nucleusClass D:nucleus (p = 0.78) | UVH6 (ULTRAVIOLET HYPERSENSITIVE 6) ATP BINDING / ATP-DEPENDENT DNA HELICASE/ ATP-DEPENDENT HELICASE/ DNA BINDING / HYDROLASE ACTING ON ACID ANHYDRIDES IN PHOSPHORUS-CONTAINING ANHYDRIDES / NUCLEIC ACID BINDING |
YER171W | Experimentaltwo hybrid | FSW = 0.1081
| Unknown | UVH6 (ULTRAVIOLET HYPERSENSITIVE 6) ATP BINDING / ATP-DEPENDENT DNA HELICASE/ ATP-DEPENDENT HELICASE/ DNA BINDING / HYDROLASE ACTING ON ACID ANHYDRIDES IN PHOSPHORUS-CONTAINING ANHYDRIDES / NUCLEIC ACID BINDING |
AT5G41370 | PredictedAffinity Capture-MSCo-purificationin vivoin vitro | FSW = 0.2023
| Class C:nucleus | XPB1 (ARABIDOPSIS HOMOLOG OF XERODERMA PIGMENTOSUM COMPLEMENTATION GROUP B 1) ATP BINDING / ATP-DEPENDENT DNA HELICASE/ ATP-DEPENDENT HELICASE/ DNA BINDING / HELICASE/ HYDROLASE/ NUCLEIC ACID BINDING |
AT3G12810 | PredictedPhenotypic Enhancement | FSW = 0.0575
| Class C:nucleus | PIE1 (PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1) ATP BINDING / DNA BINDING / HELICASE/ NUCLEIC ACID BINDING |
AT5G08190 | PredictedSynthetic Rescue | FSW = 0.0499
| Class C:nucleus | NF-YB12 (NUCLEAR FACTOR Y SUBUNIT B12) DNA BINDING / TRANSCRIPTION FACTOR |
AT5G35910 | PredictedPhenotypic Enhancement | FSW = 0.1277
| Class C:nucleus | 3-5 EXONUCLEASE DOMAIN-CONTAINING PROTEIN / HELICASE AND RNASE D C-TERMINAL DOMAIN-CONTAINING PROTEIN / HRDC DOMAIN-CONTAINING PROTEIN |
AT4G17020 | PredictedAffinity Capture-MSCo-purification | FSW = 0.2989
| Class C:nucleus | TRANSCRIPTION FACTOR-RELATED |
AT3G55770 | Predictedtwo hybridtwo hybrid | FSW = 0.0431
| Class C:nucleus | LIM DOMAIN-CONTAINING PROTEIN |
AT1G18340 | PredictedCo-purificationAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.4024
| Class C:nucleus | BASAL TRANSCRIPTION FACTOR COMPLEX SUBUNIT-RELATED |
AT3G62310 | PredictedAffinity Capture-MS | FSW = 0.0089
| Class C:nucleus | RNA HELICASE PUTATIVE |
AT3G20010 | PredictedPhenotypic Enhancement | FSW = 0.0271
| Class C:nucleus | SNF2 DOMAIN-CONTAINING PROTEIN / HELICASE DOMAIN-CONTAINING PROTEIN / RING FINGER DOMAIN-CONTAINING PROTEIN |
AT2G38560 | PredictedPhenotypic Enhancement | FSW = 0.0766
| Class C:nucleus | TFIIS (TRANSCRIPT ELONGATION FACTOR IIS) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION ELONGATION FACTOR/ TRANSCRIPTION FACTOR |
AT1G18040 | PredictedAffinity Capture-MSCo-expression | FSW = 0.1315
| Class C:nucleus | CDKD13 (CYCLIN-DEPENDENT KINASE D13) KINASE/ PROTEIN KINASE |
AT1G55750 | PredictedReconstituted ComplexCo-purificationAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.3088
| Class C:nucleus | TRANSCRIPTION FACTOR-RELATED |
AT5G41360 | PredictedAffinity Capture-MSCo-purificationin vivoin vitro | FSW = 0.3188
| Class C:nucleus | XPB2 ATP BINDING / ATP-DEPENDENT DNA HELICASE/ ATP-DEPENDENT HELICASE/ DNA BINDING / HELICASE/ HYDROLASE/ NUCLEIC ACID BINDING |
AT1G30470 | PredictedPhenotypic Suppression | FSW = 0.0216
| Unknown | SIT4 PHOSPHATASE-ASSOCIATED FAMILY PROTEIN |
AT4G35800 | Predictedbiochemical | FSW = 0.1006
| Unknown | NRPB1 (RNA POLYMERASE II LARGE SUBUNIT) DNA BINDING / DNA-DIRECTED RNA POLYMERASE |
AT5G53480 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0244
| Unknown | IMPORTIN BETA-2 PUTATIVE |
AT3G53110 | PredictedSynthetic Rescue | FSW = 0.0949
| Unknown | LOS4 (LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 4) ATP-DEPENDENT HELICASE/ RNA HELICASE/ RNA-DEPENDENT ATPASE |
AT1G75510 | PredictedAffinity Capture-Western | FSW = 0.1442
| Unknown | TRANSCRIPTION INITIATION FACTOR IIF BETA SUBUNIT (TFIIF-BETA) FAMILY PROTEIN |
AT3G28030 | PredictedCo-purification | FSW = 0.1197
| Unknown | UVH3 (ULTRAVIOLET HYPERSENSITIVE 3) DNA BINDING / CATALYTIC/ ENDONUCLEASE/ NUCLEASE/ SINGLE-STRANDED DNA BINDING |
AT1G12400 | Predictedin vitroAffinity Capture-Western | FSW = 0.3867
| Unknown | DNA BINDING |
AT1G15780 | Predictedtwo hybrid | FSW = 0.1366
| Unknown | UNKNOWN PROTEIN |
AT1G21710 | PredictedPhenotypic Enhancement | FSW = 0.0364
| Unknown | OGG1 (8-OXOGUANINE-DNA GLYCOSYLASE 1) OXIDIZED PURINE BASE LESION DNA N-GLYCOSYLASE |
AT2G20000 | PredictedAffinity Capture-MSCo-expression | FSW = 0.0310
| Unknown | HBT (HOBBIT) BINDING |
AT3G25230 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0186
| Unknown | ROF1 (ROTAMASE FKBP 1) FK506 BINDING / CALMODULIN BINDING / PEPTIDYL-PROLYL CIS-TRANS ISOMERASE |
AT5G10790 | PredictedPhenotypic Suppression | FSW = 0.0791
| Unknown | UBP22 (UBIQUITIN-SPECIFIC PROTEASE 22) UBIQUITIN THIOLESTERASE/ UBIQUITIN-SPECIFIC PROTEASE/ ZINC ION BINDING |
AT5G27620 | PredictedAffinity Capture-MS | FSW = 0.1185
| Unknown | CYCH1 (CYCLIN H1) CYCLIN-DEPENDENT PROTEIN KINASE/ PROTEIN BINDING / PROTEIN KINASE |
AT5G42000 | PredictedPhenotypic Enhancement | FSW = 0.0773
| Unknown | ORMDL FAMILY PROTEIN |
AT5G43500 | PredictedPhenotypic Enhancement | FSW = 0.0475
| Unknown | ATARP9 (ACTIN-RELATED PROTEIN 9) DNA BINDING / PROTEIN BINDING |
AT5G55310 | PredictedPhenotypic Enhancement | FSW = 0.0481
| Unknown | TOP1BETA (DNA TOPOISOMERASE 1 BETA) DNA TOPOISOMERASE TYPE I |
AT2G44150 | PredictedPhenotypic Enhancement | FSW = 0.0855
| Unknown | ASHH3 (HISTONE-LYSINE N-METHYLTRANSFERASE ASHH3) HISTONE-LYSINE N-METHYLTRANSFERASE |
AT3G54380 | PredictedPhenotypic Enhancement | FSW = 0.0855
| Unknown | SAC3/GANP FAMILY PROTEIN |
AT5G66100 | PredictedPhenotypic Enhancement | FSW = 0.0944
| Unknown | LA DOMAIN-CONTAINING PROTEIN |
Downloads
Quick help
Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454