Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G28030 - ( UVH3 (ULTRAVIOLET HYPERSENSITIVE 3) DNA binding / catalytic/ endonuclease/ nuclease/ single-stranded DNA binding )
31 Proteins interacs with AT3G28030Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT1G78300 | Experimental | FSW = 0.0070
| Unknown | GRF2 (GENERAL REGULATORY FACTOR 2) PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING |
AT2G42590 | PredictedPhenotypic Enhancement | FSW = 0.0219
| Unknown | GRF9 (GENERAL REGULATORY FACTOR 9) CALCIUM ION BINDING / PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING |
AT5G52640 | Predictedsynthetic growth defect | FSW = 0.0070
| Unknown | ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING |
AT3G18524 | Predictedtwo hybridSynthetic RescueAffinity Capture-WesternPhenotypic Suppression | FSW = 0.2307
| Unknown | MSH2 (MUTS HOMOLOG 2) ATP BINDING / DAMAGED DNA BINDING / MISMATCHED DNA BINDING / PROTEIN BINDING |
AT5G41370 | PredictedReconstituted ComplexCo-purificationinteraction prediction | FSW = 0.1047
| Unknown | XPB1 (ARABIDOPSIS HOMOLOG OF XERODERMA PIGMENTOSUM COMPLEMENTATION GROUP B 1) ATP BINDING / ATP-DEPENDENT DNA HELICASE/ ATP-DEPENDENT HELICASE/ DNA BINDING / HELICASE/ HYDROLASE/ NUCLEIC ACID BINDING |
AT1G03190 | PredictedCo-purification | FSW = 0.1353
| Unknown | UVH6 (ULTRAVIOLET HYPERSENSITIVE 6) ATP BINDING / ATP-DEPENDENT DNA HELICASE/ ATP-DEPENDENT HELICASE/ DNA BINDING / HYDROLASE ACTING ON ACID ANHYDRIDES IN PHOSPHORUS-CONTAINING ANHYDRIDES / NUCLEIC ACID BINDING |
AT5G22750 | Predictedsynthetic growth defect | FSW = 0.1463
| Unknown | RAD5 ATP BINDING / ATP-DEPENDENT HELICASE/ DNA BINDING / HELICASE/ HYDROLASE ACTING ON ACID ANHYDRIDES IN PHOSPHORUS-CONTAINING ANHYDRIDES / NUCLEIC ACID BINDING / PROTEIN BINDING / ZINC ION BINDING |
AT1G05055 | PredictedCo-purification | FSW = 0.1197
| Unknown | GTF2H2 (GENERAL TRANSCRIPTION FACTOR IIH 2) GENERAL RNA POLYMERASE II TRANSCRIPTION FACTOR |
AT2G18760 | PredictedPhenotypic Enhancement | FSW = 0.0670
| Unknown | CHR8 (CHROMATIN REMODELING 8) ATP BINDING / DNA BINDING / HELICASE/ NUCLEIC ACID BINDING |
AT2G38560 | PredictedPhenotypic Enhancement | FSW = 0.0821
| Unknown | TFIIS (TRANSCRIPT ELONGATION FACTOR IIS) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION ELONGATION FACTOR/ TRANSCRIPTION FACTOR |
AT5G20730 | PredictedSynthetic Rescue | FSW = 0.0261
| Unknown | NPH4 (NON-PHOTOTROPHIC HYPOCOTYL) DNA BINDING / TRANSCRIPTION ACTIVATOR/ TRANSCRIPTION FACTOR/ TRANSCRIPTION REGULATOR |
AT2G29570 | Predictedsynthetic growth defect | FSW = 0.0351
| Unknown | PCNA2 (PROLIFERATING CELL NUCLEAR ANTIGEN 2) DNA BINDING / DNA POLYMERASE PROCESSIVITY FACTOR |
AT1G55750 | PredictedReconstituted ComplexCo-purificationinteraction prediction | FSW = 0.0450
| Unknown | TRANSCRIPTION FACTOR-RELATED |
AT5G41360 | PredictedCo-purificationReconstituted Complex | FSW = 0.1733
| Unknown | XPB2 ATP BINDING / ATP-DEPENDENT DNA HELICASE/ ATP-DEPENDENT HELICASE/ DNA BINDING / HELICASE/ HYDROLASE/ NUCLEIC ACID BINDING |
AT2G32590 | PredictedPhenotypic Enhancement | FSW = 0.0314
| Unknown | INVOLVED IN MITOSIS MITOTIC CELL CYCLE LOCATED IN NUCLEUS CHLOROPLAST EXPRESSED IN 17 PLANT STRUCTURES EXPRESSED DURING 9 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S BARREN (INTERPROIPR008418) HAS 340 BLAST HITS TO 330 PROTEINS IN 142 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 135 FUNGI - 102 PLANTS - 21 VIRUSES - 1 OTHER EUKARYOTES - 81 (SOURCE NCBI BLINK) |
AT5G54260 | PredictedPhenotypic Enhancement | FSW = 0.1496
| Unknown | MRE11 (MEIOTIC RECOMBINATION 11) ENDONUCLEASE/ EXONUCLEASE/ HYDROLASE/ MANGANESE ION BINDING / PROTEIN SERINE/THREONINE PHOSPHATASE |
AT5G40820 | PredictedPhenotypic Enhancement | FSW = 0.0762
| Unknown | ATRAD3 BINDING / INOSITOL OR PHOSPHATIDYLINOSITOL KINASE/ PHOSPHOTRANSFERASE ALCOHOL GROUP AS ACCEPTOR / PROTEIN SERINE/THREONINE KINASE |
AT5G20850 | PredictedPhenotypic Suppression | FSW = 0.0808
| Unknown | ATRAD51 ATP BINDING / DNA BINDING / DNA-DEPENDENT ATPASE/ DAMAGED DNA BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING / SEQUENCE-SPECIFIC DNA BINDING |
AT1G04020 | PredictedPhenotypic EnhancementPhenotypic Enhancement | FSW = 0.1082
| Unknown | BARD1 (BREAST CANCER ASSOCIATED RING 1) DNA BINDING / TRANSCRIPTION COACTIVATOR |
AT2G02760 | PredictedPhenotypic Enhancement | FSW = 0.0695
| Unknown | ATUBC2 (UBIQUITING-CONJUGATING ENZYME 2) UBIQUITIN-PROTEIN LIGASE |
AT1G10930 | PredictedPhenotypic Enhancement | FSW = 0.0946
| Unknown | RECQ4A ATP BINDING / ATP-DEPENDENT HELICASE/ HELICASE/ NUCLEIC ACID BINDING |
AT1G16800 | Predictedtwo hybridPhenotypic EnhancementAffinity Capture-Western | FSW = 0.0447
| Unknown | TRNA-SPLICING ENDONUCLEASE POSITIVE EFFECTOR-RELATED |
AT4G25120 | Predictedtwo hybridPhenotypic Enhancement | FSW = 0.1209
| Unknown | ATP BINDING / ATP-DEPENDENT DNA HELICASE/ DNA BINDING / HYDROLASE |
AT5G26680 | Predictedinterologs mappingPhenotypic Enhancementsynthetic growth defectEnriched domain pairCo-expression | FSW = 0.1296
| Unknown | ENDONUCLEASE PUTATIVE |
AT1G51130 | PredictedSynthetic Lethality | FSW = 0.1931
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN CONTAINS INTERPRO DOMAIN/S NSE4 (INTERPROIPR014854) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT3G207601) HAS 200 BLAST HITS TO 198 PROTEINS IN 89 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 63 FUNGI - 88 PLANTS - 37 VIRUSES - 0 OTHER EUKARYOTES - 12 (SOURCE NCBI BLINK) |
AT4G30870 | PredictedPhenotypic Enhancement | FSW = 0.1633
| Unknown | MUS81 (MMS AND UV SENSITIVE 81) ENDONUCLEASE/ NUCLEIC ACID BINDING |
AT5G50680 | PredictedPhenotypic Enhancement | FSW = 0.0627
| Unknown | SAE1B (SUMO ACTIVATING ENZYME 1B) SUMO ACTIVATING ENZYME |
AT5G58690 | PredictedPhenotypic Enhancement | FSW = 0.0321
| Unknown | PHOSPHOINOSITIDE-SPECIFIC PHOSPHOLIPASE C FAMILY PROTEIN |
AT4G02460 | PredictedSynthetic Rescue | FSW = 0.0773
| Unknown | PMS1 (POSTMEIOTIC SEGREGATION 1) ATP BINDING / MISMATCHED DNA BINDING |
AT1G14400 | PredictedPhenotypic Enhancement | FSW = 0.0639
| Unknown | UBC1 (UBIQUITIN CARRIER PROTEIN 1) UBIQUITIN-PROTEIN LIGASE |
AT4G11080 | PredictedSynthetic Rescue | FSW = 0.0314
| Unknown | HIGH MOBILITY GROUP (HMG1/2) FAMILY PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454