Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT2G32590 - ( INVOLVED IN mitosis mitotic cell cycle LOCATED IN nucleus chloroplast EXPRESSED IN 17 plant structures EXPRESSED DURING 9 growth stages CONTAINS InterPro DOMAIN/s Barren (InterProIPR008418) Has 340 Blast hits to 330 proteins in 142 species Archae - 0 Bacteria - 0 Metazoa - 135 Fungi - 102 Plants - 21 Viruses - 1 Other Eukaryotes - 81 (source NCBI BLink) )
12 Proteins interacs with AT2G32590Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT4G26570 | Predictedtwo hybrid | FSW = 0.0368
| Unknown | ATCBL3 (ARABIDOPSIS THALIANA CALCINEURIN B-LIKE 3) CALCIUM ION BINDING |
AT3G22110 | PredictedAffinity Capture-MS | FSW = 0.0057
| Unknown | PAC1 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT2G01320 | PredictedPhenotypic Suppression | FSW = 0.0314
| Unknown | ABC TRANSPORTER FAMILY PROTEIN |
AT4G12770 | Predictedtwo hybrid | FSW = 0.1170
| Unknown | HEAT SHOCK PROTEIN BINDING |
AT5G47100 | Predictedtwo hybrid | FSW = 0.0479
| Unknown | CBL9 CALCIUM ION BINDING |
AT3G28030 | PredictedPhenotypic Enhancement | FSW = 0.0314
| Unknown | UVH3 (ULTRAVIOLET HYPERSENSITIVE 3) DNA BINDING / CATALYTIC/ ENDONUCLEASE/ NUCLEASE/ SINGLE-STRANDED DNA BINDING |
AT5G37630 | PredictedAffinity Capture-Westerninterologs mapping | FSW = 0.2208
| Unknown | EMB2656 (EMBRYO DEFECTIVE 2656) BINDING |
AT3G47460 | PredictedAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.2368
| Unknown | ATSMC2 TRANSPORTER |
AT3G57060 | PredictedAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.6316
| Unknown | BINDING |
AT5G48600 | PredictedAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.3445
| Unknown | ATSMC3 (ARABIDOPSIS THALIANA STRUCTURAL MAINTENANCE OF CHROMOSOME 3) ATP BINDING / TRANSPORTER |
AT5G62410 | PredictedAffinity Capture-MS | FSW = 0.2924
| Unknown | SMC2 (STRUCTURAL MAINTENANCE OF CHROMOSOMES 2) TRANSPORTER |
AT5G16270 | PredictedPhenotypic SuppressionCo-expression | FSW = 0.0344
| Unknown | SYN4 (SISTER CHROMATID COHESION 1 PROTEIN 4) |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454