Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G47100 - ( CBL9 calcium ion binding )
43 Proteins interacs with AT5G47100Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT4G24400 | Experimental | FSW = 0.0287
| Class A:plasma membraneClass D:cytosol (p = 0.67) | CIPK8 (CBL-INTERACTING PROTEIN KINASE 8) KINASE/ PROTEIN KINASE |
AT1G30270 | Experimentaltwo hybridtwo hybrid | FSW = 0.0756
| Class B:unclearplasma membrane | CIPK23 (CBL-INTERACTING PROTEIN KINASE 23) KINASE/ PROTEIN BINDING / PROTEIN SERINE/THREONINE KINASE |
AT3G17510 | Experimentalinteraction detection methodinteraction detection methodprotein complementation assayinteraction detection method | FSW = 0.0833
| Unknown | CIPK1 (CBL-INTERACTING PROTEIN KINASE 1) KINASE/ PROTEIN BINDING |
AT5G10930 | Experimental | FSW = 0.0556
| Unknown | CIPK5 (CBL-INTERACTING PROTEIN KINASE 5) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT1G48260 | Experimental | FSW = 0.1212
| Unknown | CIPK17 (CBL-INTERACTING PROTEIN KINASE 17) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT1G29230 | Experimental | FSW = 0.0306
| Unknown | CIPK18 (CBL-INTERACTING PROTEIN KINASE 18) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT5G35410 | Experimental | FSW = 0.0342
| Unknown | SOS2 (SALT OVERLY SENSITIVE 2) KINASE/ PROTEIN KINASE |
AT5G57630 | Experimental | FSW = 0.0766
| Unknown | CIPK21 (CBL-INTERACTING PROTEIN KINASE 21) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT2G25090 | Experimental | FSW = 0.0445
| Unknown | CIPK16 (CBL-INTERACTING PROTEIN KINASE 16) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT4G18700 | Experimental | FSW = 0.0429
| Unknown | CIPK12 (CBL-INTERACTING PROTEIN KINASE 12) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT2G30360 | Experimental | FSW = 0.0383
| Unknown | SIP4 (SOS3-INTERACTING PROTEIN 4) KINASE/ PROTEIN KINASE |
AT5G58380 | Experimental | FSW = 0.0158
| Unknown | SIP1 (SOS3-INTERACTING PROTEIN 1) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT4G30960 | Experimental | FSW = 0.0403
| Unknown | SIP3 (SOS3-INTERACTING PROTEIN 3) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT4G14960 | PredictedAffinity Capture-MS | FSW = 0.0036
| Class C:plasma membrane | TUA6 STRUCTURAL CONSTITUENT OF CYTOSKELETON |
AT3G09200 | Predictedtwo hybrid | FSW = 0.0079
| Class C:plasma membrane | 60S ACIDIC RIBOSOMAL PROTEIN P0 (RPP0B) |
AT4G36130 | Predictedinterologs mapping | FSW = 0.0317
| Class C:plasma membrane | 60S RIBOSOMAL PROTEIN L8 (RPL8C) |
AT5G64070 | Predictedin vitroin vivoin vivoin vitroAffinity Capture-MSAffinity Capture-Western | FSW = 0.0445
| Class C:plasma membrane | PI-4KBETA1 (PHOSPHATIDYLINOSITOL 4-OH KINASE BETA1) 1-PHOSPHATIDYLINOSITOL 4-KINASE |
AT4G17615 | PredictedGene fusion methodPhylogenetic profile methodCo-expression | FSW = 0.3547
| Class C:plasma membrane | CBL1 (CALCINEURIN B-LIKE PROTEIN 1) CALCIUM ION BINDING |
AT5G02490 | Predictedtwo hybridSynthetic LethalitySynthetic Rescue | FSW = 0.0079
| Class C:plasma membrane | HEAT SHOCK COGNATE 70 KDA PROTEIN 2 (HSC70-2) (HSP70-2) |
AT4G12770 | Predictedtwo hybrid | FSW = 0.0638
| Class C:plasma membrane | HEAT SHOCK PROTEIN BINDING |
AT5G50850 | Predictedtwo hybrid | FSW = 0.0085
| Unknown | MAB1 (MACCI-BOU) CATALYTIC/ PYRUVATE DEHYDROGENASE (ACETYL-TRANSFERRING) |
AT3G13080 | PredictedReconstituted Complextwo hybridReconstituted ComplexReconstituted Complextwo hybridReconstituted Complextwo hybridinterologs mapping | FSW = 0.0497
| Unknown | ATMRP3 ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES / CHLOROPHYLL CATABOLITE TRANSPORTER/ GLUTATHIONE S-CONJUGATE-EXPORTING ATPASE |
AT5G53480 | Predictedinterologs mappinginterologs mappinginterologs mappingSynthetic Lethality | FSW = 0.0143
| Unknown | IMPORTIN BETA-2 PUTATIVE |
AT5G09770 | Predictedtwo hybrid | FSW = 0.0696
| Unknown | RIBOSOMAL PROTEIN L17 FAMILY PROTEIN |
AT5G61000 | Predictedinterologs mapping | FSW = 0.0444
| Unknown | REPLICATION PROTEIN PUTATIVE |
AT4G04870 | Predictedtwo hybrid | FSW = 0.0129
| Unknown | CLS (CARDIOLIPIN SYNTHASE) CARDIOLIPIN SYNTHASE/ PHOSPHATIDYLTRANSFERASE |
AT5G65165 | Predictedtwo hybrid | FSW = 0.0220
| Unknown | SDH2-3 ELECTRON CARRIER/ SUCCINATE DEHYDROGENASE |
AT2G32590 | Predictedtwo hybrid | FSW = 0.0479
| Unknown | INVOLVED IN MITOSIS MITOTIC CELL CYCLE LOCATED IN NUCLEUS CHLOROPLAST EXPRESSED IN 17 PLANT STRUCTURES EXPRESSED DURING 9 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S BARREN (INTERPROIPR008418) HAS 340 BLAST HITS TO 330 PROTEINS IN 142 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 135 FUNGI - 102 PLANTS - 21 VIRUSES - 1 OTHER EUKARYOTES - 81 (SOURCE NCBI BLINK) |
AT2G29900 | Predictedtwo hybridin vivoin vivoin vivotwo hybridAffinity Capture-MS | FSW = 0.0087
| Unknown | PRESENILIN FAMILY PROTEIN |
AT3G57940 | Predictedtwo hybrid | FSW = 0.0348
| Unknown | UNKNOWN PROTEIN |
AT2G30330 | Predictedtwo hybrid | FSW = 0.0589
| Unknown | GCN5L1 FAMILY PROTEIN |
AT4G29020 | Predictedtwo hybrid | FSW = 0.0166
| Unknown | GLYCINE-RICH PROTEIN |
AT5G56150 | Predictedtwo hybrid | FSW = 0.0076
| Unknown | UBC30 (UBIQUITIN-CONJUGATING ENZYME 30) UBIQUITIN-PROTEIN LIGASE |
AT4G34540 | PredictedAffinity Capture-MSAffinity Capture-Western | FSW = 0.0062
| Unknown | ISOFLAVONE REDUCTASE FAMILY PROTEIN |
AT1G34580 | Predictedtwo hybrid | FSW = 0.0082
| Unknown | MONOSACCHARIDE TRANSPORTER PUTATIVE |
AT2G32220 | Predictedinterologs mappinginterologs mappinginterologs mapping | FSW = 0.0985
| Unknown | 60S RIBOSOMAL PROTEIN L27 (RPL27A) |
AT3G02000 | Predictedinterologs mapping | FSW = 0.0083
| Unknown | ROXY1 DISULFIDE OXIDOREDUCTASE |
AT3G62770 | Predictedtwo hybridReconstituted Complextwo hybrid | FSW = 0.0220
| Unknown | ATATG18A |
AT5G06600 | Predictedtwo hybrid | FSW = 0.0280
| Unknown | UBP12 (UBIQUITIN-SPECIFIC PROTEASE 12) UBIQUITIN THIOLESTERASE/ UBIQUITIN-SPECIFIC PROTEASE |
AT2G03160 | Predictedinterologs mapping | FSW = 0.0077
| Unknown | ASK19 (ARABIDOPSIS SKP1-LIKE 19) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
AT3G04710 | Predictedinterologs mapping | FSW = 0.0369
| Unknown | ANKYRIN REPEAT FAMILY PROTEIN |
AT1G64480 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.0274
| Unknown | CBL8 (CALCINEURIN B-LIKE PROTEIN 8) CALCIUM ION BINDING |
AT4G26560 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.0678
| Unknown | CBL7 (CALCINEURIN B-LIKE 7) CALCIUM ION BINDING |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454