Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G04710 - ( ankyrin repeat family protein )
71 Proteins interacs with AT3G04710Locus | Method | FSW ![]() | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT2G20450![]() ![]() ![]() ![]() | PredictedPhenotypic Suppression | FSW = 0.0106
| Unknown | 60S RIBOSOMAL PROTEIN L14 (RPL14A) |
AT3G62150![]() ![]() ![]() ![]() | Predictedinterologs mapping | FSW = 0.0047
| Unknown | PGP21 (P-GLYCOPROTEIN 21) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES |
AT3G07680![]() ![]() ![]() ![]() | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.0468
| Unknown | EMP24/GP25L/P24 FAMILY PROTEIN |
AT1G64790 | PredictedPhenotypic Suppression | FSW = 0.0194
| Unknown | BINDING |
AT3G11940![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.0253
| Unknown | ATRPS5A (RIBOSOMAL PROTEIN 5A) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT2G45300![]() ![]() ![]() ![]() | PredictedPhenotypic Suppression | FSW = 0.0162
| Unknown | 3-PHOSPHOSHIKIMATE 1-CARBOXYVINYLTRANSFERASE / 5-ENOLPYRUVYLSHIKIMATE-3-PHOSPHATE / EPSP SYNTHASE |
AT1G80190![]() ![]() ![]() ![]() | PredictedAffinity Capture-MSAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSSynthetic Lethality | FSW = 0.0564
| Unknown | PSF1 (PARTNER OF SLD FIVE 1) |
AT4G38740![]() ![]() ![]() ![]() | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSSynthetic Rescue | FSW = 0.0318
| Unknown | ROC1 (ROTAMASE CYP 1) PEPTIDYL-PROLYL CIS-TRANS ISOMERASE |
AT3G48750![]() ![]() ![]() ![]() | Predictedbiochemical | FSW = 0.0010
| Unknown | CDC2 (CELL DIVISION CONTROL 2) CYCLIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN BINDING / PROTEIN KINASE |
AT3G12110![]() ![]() ![]() ![]() | PredictedPhenotypic Enhancement | FSW = 0.0232
| Unknown | ACT11 (ACTIN-11) STRUCTURAL CONSTITUENT OF CYTOSKELETON |
AT5G47100![]() ![]() ![]() ![]() | Predictedinterologs mapping | FSW = 0.0369
| Unknown | CBL9 CALCIUM ION BINDING |
AT5G02490![]() ![]() ![]() ![]() | PredictedSynthetic Lethality | FSW = 0.0131
| Unknown | HEAT SHOCK COGNATE 70 KDA PROTEIN 2 (HSC70-2) (HSP70-2) |
AT3G12810![]() ![]() ![]() ![]() | PredictedSynthetic Lethality | FSW = 0.0685
| Unknown | PIE1 (PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1) ATP BINDING / DNA BINDING / HELICASE/ NUCLEIC ACID BINDING |
AT1G19120![]() ![]() ![]() ![]() | PredictedPhenotypic Suppression | FSW = 0.0286
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE |
AT2G03870![]() ![]() ![]() ![]() | Predictedtwo hybrid | FSW = 0.0641
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE |
AT5G61000![]() ![]() ![]() ![]() | PredictedSynthetic Rescue | FSW = 0.0281
| Unknown | REPLICATION PROTEIN PUTATIVE |
AT4G26650![]() ![]() ![]() ![]() | PredictedGene fusion methodCo-expression | FSW = 0.1299
| Unknown | RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN |
AT2G15430![]() ![]() ![]() ![]() | PredictedPhenotypic Enhancement | FSW = 0.0448
| Unknown | NRPB3 DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ PROTEIN DIMERIZATION |
AT2G36740![]() ![]() ![]() ![]() | PredictedSynthetic Lethality | FSW = 0.0980
| Unknown | SWC2 DNA BINDING / TRANSCRIPTION FACTOR |
AT1G72560![]() ![]() ![]() ![]() | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0066
| Unknown | PSD (PAUSED) NUCLEOBASE NUCLEOSIDE NUCLEOTIDE AND NUCLEIC ACID TRANSMEMBRANE TRANSPORTER/ TRNA BINDING |
AT2G02820![]() ![]() ![]() ![]() | PredictedGene fusion method | FSW = 0.0131
| Unknown | MYB88 (MYB DOMAIN PROTEIN 88) DNA BINDING / TRANSCRIPTION FACTOR |
AT2G06210![]() ![]() ![]() ![]() | PredictedPhenotypic Suppression | FSW = 0.0178
| Unknown | ELF8 (EARLY FLOWERING 8) BINDING |
AT5G48330![]() ![]() ![]() ![]() | PredictedGene fusion methodCo-expression | FSW = 0.1538
| Unknown | REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY PROTEIN |
AT4G33710![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.0116
| Unknown | PATHOGENESIS-RELATED PROTEIN PUTATIVE |
AT4G07820![]() ![]() ![]() ![]() | Predictedtwo hybrid | FSW = 0.0075
| Unknown | PATHOGENESIS-RELATED PROTEIN PUTATIVE |
AT5G26130![]() ![]() ![]() ![]() | Predictedinterologs mapping | FSW = 0.0421
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN ENDOMEMBRANE SYSTEM EXTRACELLULAR REGION EXPRESSED IN ROOT LEAF EXPRESSED DURING LP04 FOUR LEAVES VISIBLE CONTAINS INTERPRO DOMAIN/S ALLERGEN V5/TPX-1 RELATED CONSERVED SITE (INTERPROIPR018244) ALLERGEN V5/TPX-1 RELATED (INTERPROIPR001283) SCP-LIKE EXTRACELLULAR (INTERPROIPR014044) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS PATHOGENESIS-RELATED PROTEIN PUTATIVE (TAIRAT4G337101) HAS 2282 BLAST HITS TO 2195 PROTEINS IN 288 SPECIES ARCHAE - 0 BACTERIA - 49 METAZOA - 1341 FUNGI - 231 PLANTS - 611 VIRUSES - 0 OTHER EUKARYOTES - 50 (SOURCE NCBI BLINK) |
AT3G16050![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.0272
| Unknown | A37 PROTEIN HETERODIMERIZATION |
AT2G14620![]() ![]() ![]() ![]() | Predictedinterologs mapping | FSW = 0.0270
| Unknown | XYLOGLUCANXYLOGLUCOSYL TRANSFERASE PUTATIVE / XYLOGLUCAN ENDOTRANSGLYCOSYLASE PUTATIVE / ENDO-XYLOGLUCAN TRANSFERASE PUTATIVE |
AT5G36170![]() ![]() ![]() ![]() | PredictedGene fusion method | FSW = 0.0533
| Unknown | HCF109 (HIGH CHLOROPHYLL FLUORESCENT 109) TRANSLATION RELEASE FACTOR/ TRANSLATION RELEASE FACTOR CODON SPECIFIC |
AT2G24040![]() ![]() ![]() ![]() | Predictedinterologs mapping | FSW = 0.0215
| Unknown | HYDROPHOBIC PROTEIN PUTATIVE / LOW TEMPERATURE AND SALT RESPONSIVE PROTEIN PUTATIVE |
AT3G06100![]() ![]() ![]() ![]() | Predictedinterologs mapping | FSW = 0.0146
| Unknown | NIP71 (NOD26-LIKE INTRINSIC PROTEIN 71) WATER CHANNEL |
AT1G07880![]() ![]() ![]() ![]() | Predictedinterologs mapping | FSW = 0.0080
| Unknown | ATMPK13 MAP KINASE/ KINASE |
AT1G52740![]() ![]() ![]() ![]() | PredictedSynthetic Lethality | FSW = 0.0573
| Unknown | HTA9 (HISTONE H2A PROTEIN 9) DNA BINDING |
AT1G60680![]() ![]() ![]() ![]() | PredictedSynthetic Rescue | FSW = 0.0188
| Unknown | ALDO/KETO REDUCTASE FAMILY PROTEIN |
AT1G80460![]() ![]() ![]() ![]() | Predictedinterologs mapping | FSW = 0.0055
| Unknown | NHO1 (NONHOST RESISTANCE TO P S PHASEOLICOLA 1) CARBOHYDRATE KINASE/ GLYCEROL KINASE |
AT2G32050![]() ![]() ![]() ![]() | PredictedSynthetic Rescue | FSW = 0.0301
| Unknown | CELL CYCLE CONTROL PROTEIN-RELATED |
AT2G32730![]() ![]() ![]() ![]() | PredictedPhenotypic Enhancement | FSW = 0.0087
| Unknown | 26S PROTEASOME REGULATORY SUBUNIT PUTATIVE |
AT2G47090![]() ![]() ![]() ![]() | PredictedSynthetic Lethality | FSW = 0.0493
| Unknown | NUCLEIC ACID BINDING / PROTEIN BINDING / ZINC ION BINDING |
AT1G02730![]() ![]() ![]() ![]() | Predictedtwo hybrid | FSW = 0.0042
| Unknown | ATCSLD5 14-BETA-D-XYLAN SYNTHASE/ CELLULOSE SYNTHASE |
AT1G15440![]() ![]() ![]() ![]() | PredictedSynthetic Lethality | FSW = 0.0113
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT1G25155 | PredictedAffinity Capture-MS | FSW = 0.0208
| Unknown | ANTHRANILATE SYNTHASE BETA SUBUNIT PUTATIVE |
AT1G29990![]() ![]() ![]() ![]() | PredictedPhenotypic Suppression | FSW = 0.0536
| Unknown | PDF6 (PREFOLDIN 6) UNFOLDED PROTEIN BINDING |
AT2G31260![]() ![]() ![]() ![]() | PredictedSynthetic Lethality | FSW = 0.0337
| Unknown | APG9 (AUTOPHAGY 9) |
AT2G32220![]() ![]() ![]() ![]() | PredictedSynthetic Rescue | FSW = 0.0351
| Unknown | 60S RIBOSOMAL PROTEIN L27 (RPL27A) |
AT2G34250![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.0310
| Unknown | PROTEIN TRANSPORT PROTEIN SEC61 PUTATIVE |
AT2G44150![]() ![]() ![]() ![]() | PredictedSynthetic Lethalitysynthetic growth defectSynthetic Lethality | FSW = 0.0724
| Unknown | ASHH3 (HISTONE-LYSINE N-METHYLTRANSFERASE ASHH3) HISTONE-LYSINE N-METHYLTRANSFERASE |
AT3G01090![]() ![]() ![]() ![]() | Predictedbiochemical | FSW = 0.0203
| Unknown | AKIN10 (ARABIDOPSIS SNF1 KINASE HOMOLOG 10) PROTEIN BINDING / PROTEIN KINASE |
AT5G09230![]() ![]() ![]() ![]() | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-Western | FSW = 0.0780
| Unknown | SRT2 (SIRTUIN 2) DNA BINDING / NAD OR NADH BINDING / NAD-DEPENDENT HISTONE DEACETYLASE/ ZINC ION BINDING |
AT5G10260![]() ![]() ![]() ![]() | PredictedPhenotypic Suppression | FSW = 0.0468
| Unknown | ATRABH1E (ARABIDOPSIS RAB GTPASE HOMOLOG H1E) GTP BINDING |
AT5G24670![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.0271
| Unknown | CATALYTIC/ HYDROLASE/ ZINC ION BINDING |
AT5G24840![]() ![]() ![]() ![]() | PredictedAffinity Capture-MSReconstituted ComplexAffinity Capture-MS | FSW = 0.0707
| Unknown | TRNA (GUANINE-N7-)-METHYLTRANSFERASE |
AT5G41880![]() ![]() ![]() ![]() | PredictedPhenotypic Suppression | FSW = 0.0381
| Unknown | POLA3 DNA PRIMASE |
AT5G67320![]() ![]() ![]() ![]() | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MStwo hybrid | FSW = 0.1217
| Unknown | HOS15 (HIGH EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 15) |
AT3G55160![]() ![]() ![]() ![]() | Predictedinterologs mapping | FSW = 0.0144
| Unknown | EXPRESSED IN 11 PLANT STRUCTURES EXPRESSED DURING 4 ANTHESIS F MATURE EMBRYO STAGE PETAL DIFFERENTIATION AND EXPANSION STAGE D BILATERAL STAGE E EXPANDED COTYLEDON STAGE CONTAINS INTERPRO DOMAIN/S HEAT (INTERPROIPR000357) HAS 244 BLAST HITS TO 237 PROTEINS IN 110 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 124 FUNGI - 72 PLANTS - 17 VIRUSES - 0 OTHER EUKARYOTES - 31 (SOURCE NCBI BLINK) |
AT3G62770![]() ![]() ![]() ![]() | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSsynthetic growth defect | FSW = 0.0739
| Unknown | ATATG18A |
AT4G36050![]() ![]() ![]() ![]() | Predictedinterologs mapping | FSW = 0.0292
| Unknown | ENDONUCLEASE/EXONUCLEASE/PHOSPHATASE FAMILY PROTEIN |
AT4G39640![]() ![]() ![]() ![]() | PredictedPhenotypic Suppression | FSW = 0.0135
| Unknown | GGT1 (GAMMA-GLUTAMYL TRANSPEPTIDASE 1) GAMMA-GLUTAMYLTRANSFERASE/ GLUTATHIONE GAMMA-GLUTAMYLCYSTEINYLTRANSFERASE |
AT5G09290![]() ![]() ![]() ![]() | PredictedSynthetic Rescue | FSW = 0.0090
| Unknown | 3(2)5-BISPHOSPHATE NUCLEOTIDASE PUTATIVE / INOSITOL POLYPHOSPHATE 1-PHOSPHATASE PUTATIVE |
AT5G19660![]() ![]() ![]() ![]() | Predictedinterologs mapping | FSW = 0.0162
| Unknown | S1P (SITE-1 PROTEASE) ENDOPEPTIDASE/ SERINE-TYPE ENDOPEPTIDASE |
AT5G45600![]() ![]() ![]() ![]() | PredictedSynthetic Lethality | FSW = 0.0561
| Unknown | GAS41 PROTEIN BINDING |
AT2G38490![]() ![]() ![]() ![]() | PredictedEnriched domain pairGene fusion methodCo-expression | FSW = 0.0369
| Unknown | CIPK22 (CBL-INTERACTING PROTEIN KINASE 22) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE |
AT1G33670![]() ![]() ![]() ![]() | PredictedGene fusion methodCo-expression | FSW = 0.1206
| Unknown | LEUCINE-RICH REPEAT FAMILY PROTEIN |
AT3G26630![]() ![]() ![]() ![]() | PredictedGene fusion methodCo-expression | FSW = 0.1299
| Unknown | PENTATRICOPEPTIDE (PPR) REPEAT-CONTAINING PROTEIN |
AT5G05890![]() ![]() ![]() ![]() | PredictedGene fusion method | FSW = 0.0702
| Unknown | UDP-GLUCORONOSYL/UDP-GLUCOSYL TRANSFERASE FAMILY PROTEIN |
AT5G44490![]() ![]() ![]() ![]() | PredictedGene fusion method | FSW = 0.1420
| Unknown | F-BOX FAMILY PROTEIN |
AT5G56400![]() ![]() ![]() ![]() | PredictedGene fusion method | FSW = 0.1154
| Unknown | F-BOX FAMILY PROTEIN |
AT1G05530![]() ![]() ![]() ![]() | PredictedGene fusion method | FSW = 0.0465
| Unknown | UGT75B2 (UDP-GLUCOSYL TRANSFERASE 75B2) UDP-GLUCOSYLTRANSFERASE/ UDP-GLYCOSYLTRANSFERASE/ ABSCISIC ACID GLUCOSYLTRANSFERASE/ TRANSFERASE TRANSFERRING GLYCOSYL GROUPS |
AT5G35995![]() ![]() ![]() ![]() | PredictedGene fusion method | FSW = 0.1420
| Unknown | F-BOX FAMILY PROTEIN |
AT5G41630![]() ![]() ![]() ![]() | PredictedGene fusion method | FSW = 0.1319
| Unknown | F-BOX FAMILY PROTEIN |
AT2G30140![]() ![]() ![]() ![]() | PredictedGene fusion method | FSW = 0.0459
| Unknown | UDP-GLUCORONOSYL/UDP-GLUCOSYL TRANSFERASE FAMILY PROTEIN |
AT3G51530![]() ![]() ![]() ![]() | PredictedGene fusion method | FSW = 0.1231
| Unknown | F-BOX FAMILY PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454