AtPIN will be upgraded. Please send your suggestions here

AT1G52740 - ( HTA9 (HISTONE H2A PROTEIN 9) DNA binding )

144 Proteins interacs with AT1G52740

Locus	Method	FSW	Cellular Compartment Classification (C3)	Description
AT1G35670	Experimental two hybrid	FSW = 0.0024	Unknown	ATCDPK2 (CALCIUM-DEPENDENT PROTEIN KINASE 2) CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE
AT3G12810	Experimental	FSW = 0.5717	Unknown	PIE1 (PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1) ATP BINDING / DNA BINDING / HELICASE/ NUCLEIC ACID BINDING
AT3G33520	Experimental	FSW = 0.0153	Unknown	ATARP6 STRUCTURAL CONSTITUENT OF CYTOSKELETON
AT5G37055	Experimental	FSW = 0.0317	Unknown	SEF (SERRATED LEAVES AND EARLY FLOWERING)
AT1G49240	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.0486	Unknown	ACT8 (ACTIN 8) COPPER ION BINDING / STRUCTURAL CONSTITUENT OF CYTOSKELETON
AT1G07660	Predicted Affinity Capture-MS interologs mapping	FSW = 0.0960	Unknown	HISTONE H4
AT5G59690	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS interologs mapping Affinity Capture-MS	FSW = 0.2607	Unknown	HISTONE H4
AT1G07790	Predicted Affinity Capture-MS	FSW = 0.0524	Unknown	HTB1 DNA BINDING
AT5G67630	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS	FSW = 0.0989	Unknown	DNA HELICASE PUTATIVE
AT5G22330	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS	FSW = 0.1652	Unknown	RIN1 (RESISTANCE TO PSEUDOMONAS SYRINGAE PV MACULICOLA INTERACTOR 1) PROTEIN BINDING
AT5G16630	Predicted Phenotypic Suppression	FSW = 0.0770	Unknown	RAD4 DAMAGED DNA BINDING
AT1G73820	Predicted Phenotypic Enhancement	FSW = 0.1060	Unknown	SSU72-LIKE FAMILY PROTEIN
AT5G63110	Predicted Synthetic Lethality Phenotypic Enhancement	FSW = 0.2089	Unknown	HDA6 (HISTONE DEACETYLASE 6) HISTONE DEACETYLASE
AT3G49830	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.0690	Unknown	DNA HELICASE-RELATED
AT3G12110	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS	FSW = 0.1080	Unknown	ACT11 (ACTIN-11) STRUCTURAL CONSTITUENT OF CYTOSKELETON
AT5G52640	Predicted Affinity Capture-MS	FSW = 0.0520	Unknown	ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING
AT4G26110	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS	FSW = 0.1001	Unknown	NAP11 (NUCLEOSOME ASSEMBLY PROTEIN11) DNA BINDING
AT2G19480	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS	FSW = 0.0667	Unknown	NAP12 (NUCLEOSOME ASSEMBLY PROTEIN 12) DNA BINDING
AT5G19330	Predicted synthetic growth defect	FSW = 0.0470	Unknown	ARMADILLO/BETA-CATENIN REPEAT FAMILY PROTEIN / BTB/POZ DOMAIN-CONTAINING PROTEIN
AT2G44680	Predicted Phenotypic Enhancement	FSW = 0.2414	Unknown	CKB4 (CASEIN KINASE II BETA SUBUNIT 4) PROTEIN SERINE/THREONINE KINASE
AT5G67270	Predicted Synthetic Lethality Synthetic Lethality Phenotypic Enhancement	FSW = 0.2538	Unknown	ATEB1C (MICROTUBULE END BINDING PROTEIN 1) MICROTUBULE BINDING
AT5G19310	Predicted Synthetic Lethality	FSW = 0.1086	Unknown	HOMEOTIC GENE REGULATOR PUTATIVE
AT1G17790	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-Western	FSW = 0.1870	Unknown	DNA-BINDING BROMODOMAIN-CONTAINING PROTEIN
AT3G54610	Predicted synthetic growth defect Affinity Capture-Western biochemical	FSW = 0.2134	Unknown	GCN5 DNA BINDING / H3 HISTONE ACETYLTRANSFERASE/ HISTONE ACETYLTRANSFERASE
AT1G03280	Predicted Affinity Capture-MS	FSW = 0.0251	Unknown	TRANSCRIPTION INITIATION FACTOR IIE (TFIIE) ALPHA SUBUNIT FAMILY PROTEIN / GENERAL TRANSCRIPTION FACTOR TFIIE FAMILY PROTEIN
AT4G30860	Predicted synthetic growth defect	FSW = 0.0403	Unknown	SDG4 (SET DOMAIN GROUP 4) HISTONE METHYLTRANSFERASE
AT3G16980	Predicted Synthetic Lethality	FSW = 0.1115	Unknown	NRPB9A DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ NUCLEIC ACID BINDING / TRANSCRIPTION REGULATOR/ ZINC ION BINDING
AT3G13445	Predicted Affinity Capture-Western	FSW = 0.0751	Unknown	TBP1 (TATA BINDING PROTEIN 1) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR/ BINDING
AT2G43810	Predicted Phenotypic Enhancement	FSW = 0.1858	Unknown	SMALL NUCLEAR RIBONUCLEOPROTEIN F PUTATIVE / U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN PUTATIVE / SM PROTEIN F PUTATIVE
AT1G18040	Predicted biochemical	FSW = 0.0170	Unknown	CDKD13 (CYCLIN-DEPENDENT KINASE D13) KINASE/ PROTEIN KINASE
AT2G03870	Predicted Phenotypic Enhancement	FSW = 0.1459	Unknown	SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE
AT3G06010	Predicted Synthetic Lethality	FSW = 0.0987	Unknown	ATCHR12 ATP BINDING / DNA BINDING / HELICASE/ NUCLEIC ACID BINDING
AT4G10710	Predicted Synthetic Lethality synthetic growth defect	FSW = 0.2225	Unknown	SPT16 (GLOBAL TRANSCRIPTION FACTOR C)
AT1G03190	Predicted Phenotypic Enhancement	FSW = 0.1607	Unknown	UVH6 (ULTRAVIOLET HYPERSENSITIVE 6) ATP BINDING / ATP-DEPENDENT DNA HELICASE/ ATP-DEPENDENT HELICASE/ DNA BINDING / HYDROLASE ACTING ON ACID ANHYDRIDES IN PHOSPHORUS-CONTAINING ANHYDRIDES / NUCLEIC ACID BINDING
AT5G44200	Predicted Synthetic Lethality	FSW = 0.0187	Unknown	CBP20 (CAP-BINDING PROTEIN 20) RNA BINDING / RNA CAP BINDING
AT4G38130	Predicted Synthetic Lethality	FSW = 0.0882	Unknown	HD1 (HISTONE DEACETYLASE 1) BASAL TRANSCRIPTION REPRESSOR/ HISTONE DEACETYLASE/ PROTEIN BINDING
AT1G02740	Predicted Synthetic Lethality synthetic growth defect Phenotypic Enhancement	FSW = 0.3165	Unknown	CHROMATIN BINDING
AT1G05120	Predicted Affinity Capture-MS	FSW = 0.0461	Unknown	SNF2 DOMAIN-CONTAINING PROTEIN / HELICASE DOMAIN-CONTAINING PROTEIN / RING FINGER DOMAIN-CONTAINING PROTEIN
AT2G35670	Predicted Phenotypic Suppression	FSW = 0.1156	Unknown	FIS2 (FERTILIZATION INDEPENDENT SEED 2) TRANSCRIPTION FACTOR
AT3G62310	Predicted Affinity Capture-MS	FSW = 0.0087	Unknown	RNA HELICASE PUTATIVE
AT2G47620	Predicted Phenotypic Enhancement	FSW = 0.1534	Unknown	ATSWI3A (SWITCH/SUCROSE NONFERMENTING 3A) DNA BINDING
AT1G07370	Predicted Phenotypic Enhancement	FSW = 0.2072	Unknown	PCNA1 (PROLIFERATING CELLULAR NUCLEAR ANTIGEN) DNA BINDING / DNA POLYMERASE PROCESSIVITY FACTOR/ PROTEIN BINDING
AT2G36740	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-Western Reconstituted Complex Affinity Capture-MS Phenotypic Suppression	FSW = 0.5161	Unknown	SWC2 DNA BINDING / TRANSCRIPTION FACTOR
AT2G37470	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS	FSW = 0.0521	Unknown	HISTONE H2B PUTATIVE
AT2G38560	Predicted Synthetic Lethality synthetic growth defect synthetic growth defect Phenotypic Enhancement	FSW = 0.3287	Unknown	TFIIS (TRANSCRIPT ELONGATION FACTOR IIS) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION ELONGATION FACTOR/ TRANSCRIPTION FACTOR
AT2G15430	Predicted Phenotypic Enhancement	FSW = 0.1680	Unknown	NRPB3 DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ PROTEIN DIMERIZATION
AT2G47210	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS	FSW = 0.1399	Unknown	MYB FAMILY TRANSCRIPTION FACTOR
AT1G06230	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-Western	FSW = 0.1622	Unknown	GTE4 (GLOBAL TRANSCRIPTION FACTOR GROUP E 4) DNA BINDING
AT1G55520	Predicted Affinity Capture-Western	FSW = 0.1401	Unknown	TBP2 (TATA BINDING PROTEIN 2) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR/ TATA-BINDING PROTEIN BINDING
AT2G44950	Predicted Synthetic Lethality Synthetic Lethality Synthetic Lethality Synthetic Lethality Synthetic Lethality Synthetic Lethality Phenotypic Enhancement	FSW = 0.2707	Unknown	HUB1 (HISTONE MONO-UBIQUITINATION 1) PROTEIN BINDING / PROTEIN HOMODIMERIZATION/ UBIQUITIN-PROTEIN LIGASE/ ZINC ION BINDING
AT2G22290	Predicted Synthetic Lethality Synthetic Lethality	FSW = 0.0426	Unknown	ATRABH1D (ARABIDOPSIS RAB GTPASE HOMOLOG H1D) GTP BINDING
AT1G75510	Predicted Phenotypic Enhancement	FSW = 0.1501	Unknown	TRANSCRIPTION INITIATION FACTOR IIF BETA SUBUNIT (TFIIF-BETA) FAMILY PROTEIN
AT5G26710	Predicted Affinity Capture-MS	FSW = 0.0183	Unknown	GLUTAMATE-TRNA LIGASE PUTATIVE / GLUTAMYL-TRNA SYNTHETASE PUTATUVE / GLURS PUTATIVE
AT3G47690	Predicted Synthetic Lethality Synthetic Lethality	FSW = 0.1995	Unknown	ATEB1A MICROTUBULE BINDING
AT3G25980	Predicted Synthetic Lethality Synthetic Lethality Synthetic Lethality Phenotypic Enhancement	FSW = 0.1182	Unknown	MITOTIC SPINDLE CHECKPOINT PROTEIN PUTATIVE (MAD2)
AT5G40820	Predicted synthetic growth defect	FSW = 0.0541	Unknown	ATRAD3 BINDING / INOSITOL OR PHOSPHATIDYLINOSITOL KINASE/ PHOSPHOTRANSFERASE ALCOHOL GROUP AS ACCEPTOR / PROTEIN SERINE/THREONINE KINASE
AT4G16420	Predicted synthetic growth defect	FSW = 0.0440	Unknown	ADA2B (HOMOLOG OF YEAST ADA2 2B) DNA BINDING / TRANSCRIPTION COACTIVATOR/ TRANSCRIPTION FACTOR
AT5G19910	Predicted Synthetic Lethality	FSW = 0.2915	Unknown	SOH1 FAMILY PROTEIN
AT5G63860	Predicted Affinity Capture-MS synthetic growth defect	FSW = 0.0713	Unknown	UVR8 (UVB-RESISTANCE 8) CHROMATIN BINDING / GUANYL-NUCLEOTIDE EXCHANGE FACTOR
AT2G42120	Predicted Phenotypic Enhancement	FSW = 0.0273	Unknown	POLD2 (DNA POLYMERASE DELTA SMALL SUBUNIT) DNA BINDING / DNA-DIRECTED DNA POLYMERASE
AT3G07880	Predicted Phenotypic Enhancement	FSW = 0.0280	Unknown	RHO GDP-DISSOCIATION INHIBITOR FAMILY PROTEIN
AT2G36200	Predicted synthetic growth defect	FSW = 0.1399	Unknown	KINESIN MOTOR PROTEIN-RELATED
AT2G21790	Predicted synthetic growth defect	FSW = 0.0265	Unknown	RNR1 (RIBONUCLEOTIDE REDUCTASE 1) ATP BINDING / PROTEIN BINDING / RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE
AT1G04730	Predicted Synthetic Lethality synthetic growth defect Phenotypic Enhancement	FSW = 0.2232	Unknown	AAA-TYPE ATPASE FAMILY PROTEIN
AT1G04950	Predicted Phenotypic Enhancement	FSW = 0.1719	Unknown	TAF6 (TBP-ASSOCIATED FACTOR 6) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR/ TRANSCRIPTION INITIATION FACTOR
AT1G05910	Predicted Phenotypic Enhancement	FSW = 0.1598	Unknown	CELL DIVISION CYCLE PROTEIN 48-RELATED / CDC48-RELATED
AT1G08780	Predicted Synthetic Lethality Synthetic Lethality Phenotypic Enhancement Synthetic Lethality	FSW = 0.2476	Unknown	AIP3 (ABI3-INTERACTING PROTEIN 3) UNFOLDED PROTEIN BINDING
AT1G08880	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.1928	Unknown	H2AXA DNA BINDING
AT1G09020	Predicted Phenotypic Enhancement	FSW = 0.0563	Unknown	SNF4 (HOMOLOG OF YEAST SUCROSE NONFERMENTING 4) PROTEIN KINASE ACTIVATOR
AT1G26170	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS	FSW = 0.0956	Unknown	BINDING / PROTEIN TRANSPORTER
AT1G29990	Predicted Synthetic Lethality Synthetic Lethality Phenotypic Enhancement	FSW = 0.2049	Unknown	PDF6 (PREFOLDIN 6) UNFOLDED PROTEIN BINDING
AT1G34150	Predicted Phenotypic Enhancement	FSW = 0.1518	Unknown	TRNA PSEUDOURIDINE SYNTHASE FAMILY PROTEIN
AT1G51710	Predicted Phenotypic Enhancement synthetic growth defect	FSW = 0.2561	Unknown	UBP6 (UBIQUITIN-SPECIFIC PROTEASE 6) CALMODULIN BINDING / UBIQUITIN-SPECIFIC PROTEASE
AT1G04020	Predicted synthetic growth defect	FSW = 0.1520	Unknown	BARD1 (BREAST CANCER ASSOCIATED RING 1) DNA BINDING / TRANSCRIPTION COACTIVATOR
AT1G18090	Predicted Phenotypic Enhancement	FSW = 0.0380	Unknown	EXONUCLEASE PUTATIVE
AT1G32130	Predicted Phenotypic Enhancement	FSW = 0.1518	Unknown	FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 25 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S TFIIS N-TERMINAL (INTERPROIPR017923) IWS1 C-TERMINAL (INTERPROIPR008654) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS IWS1 C-TERMINUS FAMILY PROTEIN (TAIRAT4G190001) HAS 907 BLAST HITS TO 871 PROTEINS IN 182 SPECIES ARCHAE - 4 BACTERIA - 14 METAZOA - 417 FUNGI - 195 PLANTS - 42 VIRUSES - 8 OTHER EUKARYOTES - 227 (SOURCE NCBI BLINK)
AT1G54140	Predicted Synthetic Lethality Phenotypic Enhancement	FSW = 0.2358	Unknown	TAFII21 (TATA BINDING PROTEIN ASSOCIATED FACTOR 21KDA SUBUNIT) DNA BINDING / TRANSCRIPTION INITIATION FACTOR
AT1G57620	Predicted Affinity Capture-MS	FSW = 0.0164	Unknown	EMP24/GP25L/P24 FAMILY PROTEIN
AT1G61040	Predicted Synthetic Lethality Synthetic Lethality Phenotypic Enhancement synthetic growth defect	FSW = 0.2688	Unknown	VIP5 (VERNALIZATION INDEPENDENCE 5) DNA BINDING
AT1G63160	Predicted Phenotypic Enhancement	FSW = 0.1310	Unknown	REPLICATION FACTOR C 40 KDA PUTATIVE
AT1G66740	Predicted Synthetic Lethality synthetic growth defect synthetic growth defect Phenotypic Enhancement	FSW = 0.2845	Unknown	SGA2
AT1G67190	Predicted synthetic growth defect Synthetic Lethality	FSW = 0.1686	Unknown	F-BOX FAMILY PROTEIN
AT1G80410	Predicted Synthetic Lethality	FSW = 0.1586	Unknown	EMB2753 (EMBRYO DEFECTIVE 2753) BINDING
AT2G02760	Predicted Synthetic Lethality Synthetic Lethality Synthetic Lethality Synthetic Lethality Synthetic Lethality	FSW = 0.2249	Unknown	ATUBC2 (UBIQUITING-CONJUGATING ENZYME 2) UBIQUITIN-PROTEIN LIGASE
AT2G44150	Predicted Synthetic Lethality Synthetic Lethality synthetic growth defect Synthetic Lethality Phenotypic Enhancement	FSW = 0.3257	Unknown	ASHH3 (HISTONE-LYSINE N-METHYLTRANSFERASE ASHH3) HISTONE-LYSINE N-METHYLTRANSFERASE
AT2G44580	Predicted Synthetic Lethality synthetic growth defect	FSW = 0.2162	Unknown	PROTEIN BINDING / ZINC ION BINDING
AT3G04710	Predicted Synthetic Lethality	FSW = 0.0573	Unknown	ANKYRIN REPEAT FAMILY PROTEIN
AT3G18860	Predicted synthetic growth defect Phenotypic Enhancement	FSW = 0.2261	Unknown	TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT3G21060	Predicted Synthetic Lethality Phenotypic Enhancement synthetic growth defect	FSW = 0.2431	Unknown	TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT3G22480	Predicted Synthetic Lethality Synthetic Lethality Phenotypic Enhancement	FSW = 0.2157	Unknown	PREFOLDIN-RELATED KE2 FAMILY PROTEIN
AT3G22590	Predicted Synthetic Lethality Synthetic Lethality Synthetic Lethality synthetic growth defect Synthetic Lethality Phenotypic Enhancement	FSW = 0.3030	Unknown	RNA POL II ACCESSORY FACTOR CDC73 FAMILY PROTEIN
AT3G25100	Predicted Synthetic Lethality synthetic growth defect	FSW = 0.1063	Unknown	CDC45 (CELL DIVISION CYCLE 45)
AT3G42660	Predicted Synthetic Lethality synthetic growth defect Phenotypic Enhancement	FSW = 0.3037	Unknown	NUCLEOTIDE BINDING
AT3G54380	Predicted Synthetic Lethality Synthetic Lethality Phenotypic Enhancement	FSW = 0.2203	Unknown	SAC3/GANP FAMILY PROTEIN
AT4G22140	Predicted Synthetic Lethality Phenotypic Enhancement	FSW = 0.2080	Unknown	DNA BINDING / PROTEIN BINDING / ZINC ION BINDING
AT4G27180	Predicted Phenotypic Enhancement	FSW = 0.1690	Unknown	ATK2 (ARABIDOPSIS THALIANA KINESIN 2) MICROTUBULE BINDING / MICROTUBULE MOTOR
AT5G09740	Predicted biochemical synthetic growth defect	FSW = 0.3511	Unknown	HAM2 (HISTONE ACETYLTRANSFERASE OF THE MYST FAMILY 2) H3/H4 HISTONE ACETYLTRANSFERASE/ HISTONE ACETYLTRANSFERASE/ NUCLEIC ACID BINDING / ZINC ION BINDING
AT5G10260	Predicted Synthetic Lethality Synthetic Lethality Phenotypic Enhancement synthetic growth defect	FSW = 0.2128	Unknown	ATRABH1E (ARABIDOPSIS RAB GTPASE HOMOLOG H1E) GTP BINDING
AT5G10270	Predicted biochemical	FSW = 0.2245	Unknown	CDKC1 (CYCLIN-DEPENDENT KINASE C1) KINASE
AT5G13780	Predicted Synthetic Lethality Synthetic Lethality	FSW = 0.2269	Unknown	GCN5-RELATED N-ACETYLTRANSFERASE PUTATIVE
AT5G23290	Predicted Synthetic Lethality Phenotypic Enhancement	FSW = 0.1835	Unknown	PDF5 (PREFOLDIN 5) UNFOLDED PROTEIN BINDING
AT5G26680	Predicted synthetic growth defect	FSW = 0.2030	Unknown	ENDONUCLEASE PUTATIVE
AT5G43500	Predicted Phenotypic Enhancement	FSW = 0.2978	Unknown	ATARP9 (ACTIN-RELATED PROTEIN 9) DNA BINDING / PROTEIN BINDING
AT5G45140	Predicted Phenotypic Enhancement	FSW = 0.0398	Unknown	NRPC2 DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ RIBONUCLEOSIDE BINDING
AT5G49510	Predicted Synthetic Lethality Synthetic Lethality Synthetic Lethality Phenotypic Enhancement	FSW = 0.2054	Unknown	PDF3 (PREFOLDIN 3) UNFOLDED PROTEIN BINDING
AT5G50320	Predicted biochemical	FSW = 0.2652	Unknown	ELO3 (ELONGATA 3) HISTONE ACETYLTRANSFERASE
AT5G53770	Predicted Synthetic Lethality Synthetic Lethality	FSW = 0.1375	Unknown	NUCLEOTIDYLTRANSFERASE FAMILY PROTEIN
AT5G61150	Predicted Synthetic Lethality Synthetic Lethality Phenotypic Enhancement synthetic growth defect	FSW = 0.2768	Unknown	VIP4 (VERNALIZATION INDEPENDENCE 4) PROTEIN BINDING
AT5G63610	Predicted Phenotypic Enhancement	FSW = 0.1438	Unknown	CDKE1 (CYCLIN-DEPENDENT KINASE E1) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
AT5G67320	Predicted Synthetic Lethality Phenotypic Enhancement synthetic growth defect	FSW = 0.1953	Unknown	HOS15 (HIGH EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 15)
AT1G54390	Predicted Phenotypic Enhancement Phenotypic Suppression	FSW = 0.1884	Unknown	PHD FINGER PROTEIN-RELATED
AT1G79730	Predicted Phenotypic Enhancement	FSW = 0.1485	Unknown	ELF7 (EARLY FLOWERING 7)
AT2G18290	Predicted synthetic growth defect	FSW = 0.0478	Unknown	ANAPHASE-PROMOTING COMPLEX SUBUNIT 10 FAMILY / APC10 FAMILY
AT2G34770	Predicted Phenotypic Enhancement	FSW = 0.0432	Unknown	FAH1 (FATTY ACID HYDROXYLASE 1) CATALYTIC/ FATTY ACID ALPHA-HYDROXYLASE
AT3G01090	Predicted Phenotypic Enhancement	FSW = 0.1121	Unknown	AKIN10 (ARABIDOPSIS SNF1 KINASE HOMOLOG 10) PROTEIN BINDING / PROTEIN KINASE
AT3G18520	Predicted Phenotypic Enhancement	FSW = 0.1456	Unknown	HDA15 HISTONE DEACETYLASE
AT3G46320	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS	FSW = 0.1104	Unknown	HISTONE H4
AT3G47120	Predicted Phenotypic Enhancement	FSW = 0.0485	Unknown	RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN
AT4G04210	Predicted Phenotypic Enhancement	FSW = 0.1614	Unknown	PUX4 PROTEIN BINDING
AT4G12620	Predicted synthetic growth defect	FSW = 0.0261	Unknown	ORC1B (ORIGIN OF REPLICATION COMPLEX 1B) DNA BINDING / DOUBLE-STRANDED METHYLATED DNA BINDING / PROTEIN BINDING
AT4G36080	Predicted Affinity Capture-MS	FSW = 0.1427	Unknown	FAT DOMAIN-CONTAINING PROTEIN / PHOSPHATIDYLINOSITOL 3- AND 4-KINASE FAMILY PROTEIN
AT5G10390	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.1914	Unknown	HISTONE H3
AT5G10400	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS	FSW = 0.2630	Unknown	HISTONE H3
AT5G10790	Predicted Phenotypic Suppression	FSW = 0.3004	Unknown	UBP22 (UBIQUITIN-SPECIFIC PROTEASE 22) UBIQUITIN THIOLESTERASE/ UBIQUITIN-SPECIFIC PROTEASE/ ZINC ION BINDING
AT5G22010	Predicted synthetic growth defect	FSW = 0.0856	Unknown	ATRFC1 (REPLICATION FACTOR C 1) ATP BINDING / DNA BINDING / DNA CLAMP LOADER/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING
AT5G25380	Predicted synthetic growth defect	FSW = 0.0290	Unknown	CYCA21 (CYCLIN A21) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR
AT5G26110	Predicted synthetic growth defect	FSW = 0.0102	Unknown	ATP BINDING / CATALYTIC/ PROTEIN KINASE
AT5G41880	Predicted Phenotypic Enhancement	FSW = 0.0927	Unknown	POLA3 DNA PRIMASE
AT5G45600	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Phenotypic Suppression	FSW = 0.4188	Unknown	GAS41 PROTEIN BINDING
AT5G46030	Predicted Phenotypic Enhancement	FSW = 0.1714	Unknown	UNKNOWN PROTEIN
AT5G48120	Predicted Phenotypic Enhancement	FSW = 0.1317	Unknown	BINDING
AT5G48640	Predicted Phenotypic Enhancement	FSW = 0.1555	Unknown	CYCLIN FAMILY PROTEIN
AT5G63670	Predicted Phenotypic Enhancement	FSW = 0.2669	Unknown	SPT42 (SPT4 HOMOLOG 2) POSITIVE TRANSCRIPTION ELONGATION FACTOR/ ZINC ION BINDING
AT5G65180	Predicted Phenotypic Enhancement synthetic growth defect	FSW = 0.1825	Unknown	FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN EXPRESSED IN 18 PLANT STRUCTURES EXPRESSED DURING 9 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S PROTEIN OF UNKNOWN FUNCTION DUF618 (INTERPROIPR006903) REGULATION OF NUCLEAR PRE-MRNA PROTEIN (INTERPROIPR006569) ENTH/VHS (INTERPROIPR008942) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT5G100601) HAS 3523 BLAST HITS TO 3241 PROTEINS IN 333 SPECIES ARCHAE - 25 BACTERIA - 251 METAZOA - 1575 FUNGI - 421 PLANTS - 142 VIRUSES - 17 OTHER EUKARYOTES - 1092 (SOURCE NCBI BLINK)
AT5G66100	Predicted Phenotypic Enhancement	FSW = 0.2078	Unknown	LA DOMAIN-CONTAINING PROTEIN
AT2G18000	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.3374	Unknown	TAF14 (TBP-ASSOCIATED FACTOR 14)
AT1G09200	Predicted Affinity Capture-MS	FSW = 0.1310	Unknown	HISTONE H3
AT1G09580	Predicted Affinity Capture-MS	FSW = 0.0155	Unknown	EMP24/GP25L/P24 FAMILY PROTEIN
AT2G17930	Predicted Affinity Capture-MS	FSW = 0.1456	Unknown	BINDING / INOSITOL OR PHOSPHATIDYLINOSITOL KINASE/ PHOSPHOTRANSFERASE ALCOHOL GROUP AS ACCEPTOR
AT3G07740	Predicted synthetic growth defect	FSW = 0.0633	Unknown	ADA2A (HOMOLOG OF YEAST ADA2 2A) DNA BINDING / TRANSCRIPTION FACTOR
AT1G55255	Predicted Synthetic Lethality Synthetic Lethality Synthetic Lethality Synthetic Lethality Synthetic Lethality	FSW = 0.1099	Unknown	ADA2A (HOMOLOG OF YEAST ADA2 2A) DNA BINDING / TRANSCRIPTION FACTOR
AT1G14400	Predicted Synthetic Lethality Synthetic Lethality Synthetic Lethality Synthetic Lethality Synthetic Lethality	FSW = 0.1285	Unknown	UBC1 (UBIQUITIN CARRIER PROTEIN 1) UBIQUITIN-PROTEIN LIGASE
AT4G30890	Predicted Synthetic Lethality	FSW = 0.0367	Unknown	UBP24 (UBIQUITIN-SPECIFIC PROTEASE 24) UBIQUITIN THIOLESTERASE/ UBIQUITIN-SPECIFIC PROTEASE
AT3G49660	Predicted Synthetic Lethality Synthetic Lethality	FSW = 0.1548	Unknown	TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN

Downloads

Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from

Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment

Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment

Class C: Same as Class A but the PPI is predicted

Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB

Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

Learn more

How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454

Welcome to AtPIN

AtPIN will be upgraded. Please send your suggestions here

AT1G52740 - ( HTA9 (HISTONE H2A PROTEIN 9) DNA binding )

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown