Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G44200 - ( CBP20 (CAP-BINDING PROTEIN 20) RNA binding / RNA cap binding )
44 Proteins interacs with AT5G44200| Locus | Method | FSW  | Cellular Compartment Classification (C3) | Description |
|---|---|---|---|---|
AT5G22290
   | Experimentalpull down | FSW = 0.0541
| Class A:nucleusClass B:cytosolClass D:nucleus (p = 0.78) | ANAC089 (ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 89) TRANSCRIPTION FACTOR |
| AT4G18960
| Experimental | FSW = 0.0103
| Class A:nucleusClass D:nucleus (p = 0.78) | AG (AGAMOUS) DNA BINDING / TRANSCRIPTION FACTOR |
| AT2G13540
| Experimentaltwo hybridconfocal microscopytwo hybrid | FSW = 0.1639
| Class A:nucleus | ABH1 (ABA HYPERSENSITIVE 1) RNA CAP BINDING |
| AT4G00650
| Experimental | FSW = 0.0216
| Class D:nucleus (p = 0.78) | FRI (FRIGIDA) PROTEIN HETERODIMERIZATION/ PROTEIN HOMODIMERIZATION |
| AT3G61897 | ExperimentalAffinity Capture-RNAaffinity technology | FSW = 0.0851
| Unknown | FRI (FRIGIDA) PROTEIN HETERODIMERIZATION/ PROTEIN HOMODIMERIZATION |
| AT1G73687 | ExperimentalAffinity Capture-RNAaffinity technology | FSW = 0.1071
| Unknown | FRI (FRIGIDA) PROTEIN HETERODIMERIZATION/ PROTEIN HOMODIMERIZATION |
| AT4G19395 | ExperimentalAffinity Capture-RNAaffinity technology | FSW = 0.0851
| Unknown | FRI (FRIGIDA) PROTEIN HETERODIMERIZATION/ PROTEIN HOMODIMERIZATION |
| AT5G04275 | ExperimentalAffinity Capture-RNAaffinity technology | FSW = 0.1250
| Unknown | FRI (FRIGIDA) PROTEIN HETERODIMERIZATION/ PROTEIN HOMODIMERIZATION |
| AT2G21660
| Predictedinteraction prediction | FSW = 0.0577
| Class C:nucleus | CCR2 (COLD CIRCADIAN RHYTHM AND RNA BINDING 2) RNA BINDING / DOUBLE-STRANDED DNA BINDING / SINGLE-STRANDED DNA BINDING |
| AT2G47640
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.0439
| Class C:nucleus | SMALL NUCLEAR RIBONUCLEOPROTEIN D2 PUTATIVE / SNRNP CORE PROTEIN D2 PUTATIVE / SM PROTEIN D2 PUTATIVE |
| AT3G50670
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.0929
| Class C:nucleus | U1-70K (U1 SMALL NUCLEAR RIBONUCLEOPROTEIN-70K) RNA BINDING / NUCLEIC ACID BINDING / NUCLEOTIDE BINDING |
| AT3G57150
| PredictedSynthetic LethalityCo-expression | FSW = 0.0750
| Class C:nucleus | NAP57 (ARABIDOPSIS THALIANA HOMOLOGUE OF NAP57) PSEUDOURIDINE SYNTHASE |
| AT1G20580
| PredictedSynthetic LethalityCo-expression | FSW = 0.0923
| Class C:nucleus | SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE |
| AT3G04610
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.0441
| Class C:nucleus | FLK (FLOWERING LOCUS KH DOMAIN) RNA BINDING / NUCLEIC ACID BINDING |
| AT5G37720
| PredictedAffinity Capture-MS | FSW = 0.0264
| Class C:nucleus | RNA AND EXPORT FACTOR-BINDING PROTEIN PUTATIVE |
| AT3G05060
| PredictedSynthetic LethalityCo-expression | FSW = 0.0556
| Class C:nucleus | SAR DNA-BINDING PROTEIN PUTATIVE |
| AT3G06720
| Predictedinteraction predictionAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.0531
| Class C:nucleus | IMPA-1 (IMPORTIN ALPHA ISOFORM 1) BINDING / PROTEIN TRANSPORTER |
| AT2G27470
| PredictedSynthetic LethalityCo-expression | FSW = 0.0400
| Class C:nucleus | NF-YB11 (NUCLEAR FACTOR Y SUBUNIT B11) TRANSCRIPTION FACTOR |
| AT5G66010
| Predictedin vitroAffinity Capture-MSCo-expression | FSW = 0.0469
| Class C:nucleus | RNA BINDING / NUCLEIC ACID BINDING / NUCLEOTIDE BINDING |
| AT4G18040
| Predictedinteraction prediction | FSW = 0.0504
| Class C:nucleus | EIF4E (EUKARYOTIC TRANSLATION INITATION FACTOR 4E) RNA BINDING / RNA CAP BINDING / PROTEIN BINDING / TRANSLATION INITIATION FACTOR |
| AT1G80070
| PredictedAffinity Capture-MS | FSW = 0.0856
| Unknown | SUS2 (ABNORMAL SUSPENSOR 2) |
| AT3G55200 | PredictedAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.0533
| Unknown | SPLICING FACTOR PUTATIVE |
| AT5G53480
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.0260
| Unknown | IMPORTIN BETA-2 PUTATIVE |
| AT5G52640
| Predictedsynthetic growth defect | FSW = 0.0100
| Unknown | ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING |
| AT5G66130
| Predictedtwo hybrid | FSW = 0.0215
| Unknown | ATRAD17 (ARABIDOPSIS THALIANA RADIATION SENSITIVE) |
| AT5G55670
| Predictedtwo hybridtwo hybridCo-expression | FSW = 0.0200
| Unknown | RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN |
| AT1G49760
| PredictedAffinity Capture-MS | FSW = 0.1001
| Unknown | PAB8 (POLY(A) BINDING PROTEIN 8) RNA BINDING / TRANSLATION INITIATION FACTOR |
| AT3G03340
| PredictedSynthetic LethalityAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.1943
| Unknown | UNE6 (UNFERTILIZED EMBRYO SAC 6) |
| AT3G55220
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0792
| Unknown | SPLICING FACTOR PUTATIVE |
| AT4G34490
| PredictedSynthetic Lethality | FSW = 0.0095
| Unknown | ATCAP1 (ARABIDOPSIS THALIANA CYCLASE ASSOCIATED PROTEIN 1) ACTIN BINDING |
| AT1G10580
| PredictedAffinity Capture-MS | FSW = 0.0261
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
| AT1G52740
| PredictedSynthetic Lethality | FSW = 0.0187
| Unknown | HTA9 (HISTONE H2A PROTEIN 9) DNA BINDING |
| AT1G80410
| Predictedsynthetic growth defect | FSW = 0.0224
| Unknown | EMB2753 (EMBRYO DEFECTIVE 2753) BINDING |
| AT3G13170
| PredictedPhenotypic EnhancementPhenotypic Suppression | FSW = 0.0653
| Unknown | ATSPO11-1 ATP BINDING / DNA BINDING / DNA TOPOISOMERASE (ATP-HYDROLYZING)/ CATALYTIC |
| AT3G54380
| PredictedAffinity Capture-MS | FSW = 0.0583
| Unknown | SAC3/GANP FAMILY PROTEIN |
| AT4G38630
| Predictedsynthetic growth defect | FSW = 0.0096
| Unknown | RPN10 (REGULATORY PARTICLE NON-ATPASE 10) PEPTIDE RECEPTOR |
| AT5G13780
| Predictedsynthetic growth defect | FSW = 0.0206
| Unknown | GCN5-RELATED N-ACETYLTRANSFERASE PUTATIVE |
| AT5G60040
| PredictedSynthetic LethalityCo-expression | FSW = 0.0097
| Unknown | NRPC1 DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ RIBONUCLEOSIDE BINDING / ZINC ION BINDING |
| AT1G02690
| PredictedAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.0476
| Unknown | IMPA-6 (IMPORTIN ALPHA ISOFORM 6) BINDING / PROTEIN TRANSPORTER |
| AT1G11650
| PredictedAffinity Capture-MSAffinity Capture-MSSynthetic Lethalityinteraction prediction | FSW = 0.1943
| Unknown | RNA-BINDING PROTEIN 45 (RBP45) PUTATIVE |
| AT5G40490
| PredictedAffinity Capture-MSAffinity Capture-MSSynthetic LethalityCo-expression | FSW = 0.0984
| Unknown | RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN |
| AT1G22760
| PredictedAffinity Capture-MS | FSW = 0.1168
| Unknown | PAB3 (POLY(A) BINDING PROTEIN 3) RNA BINDING / TRANSLATION INITIATION FACTOR |
| AT5G02820
| PredictedPhenotypic EnhancementPhenotypic Suppression | FSW = 0.0250
| Unknown | RHL2 (ROOT HAIRLESS 2) ATP BINDING / DNA BINDING / DNA TOPOISOMERASE (ATP-HYDROLYZING)/ IDENTICAL PROTEIN BINDING / PROTEIN BINDING |
| AT3G60240
| Predictedinteraction prediction | FSW = 0.0745
| Unknown | EIF4G (EUKARYOTIC TRANSLATION INITIATION FACTOR 4G) TRANSLATION INITIATION FACTOR |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
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