Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G11650 - ( RNA-binding protein 45 (RBP45) putative )
39 Proteins interacs with AT1G11650Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT2G01950 | Experimentalphage display | FSW = 0.0057
| Unknown | BRL2 (BRI1-LIKE 2) ATP BINDING / PROTEIN SERINE/THREONINE KINASE/ TRANSMEMBRANE RECEPTOR PROTEIN SERINE/THREONINE KINASE |
AT3G54110 | PredictedGene fusion method | FSW = 0.1119
| Unknown | PUMP1 (PLANT UNCOUPLING MITOCHONDRIAL PROTEIN 1) BINDING / OXIDATIVE PHOSPHORYLATION UNCOUPLER |
AT3G07590 | PredictedAffinity Capture-MS | FSW = 0.1695
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN D1 PUTATIVE / SNRNP CORE PROTEIN D1 PUTATIVE / SM PROTEIN D1 PUTATIVE |
AT5G03240 | PredictedGene fusion method | FSW = 0.1738
| Unknown | UBQ3 (POLYUBIQUITIN 3) PROTEIN BINDING |
AT2G21660 | Predictedinteraction prediction | FSW = 0.0504
| Unknown | CCR2 (COLD CIRCADIAN RHYTHM AND RNA BINDING 2) RNA BINDING / DOUBLE-STRANDED DNA BINDING / SINGLE-STRANDED DNA BINDING |
AT5G38480 | PredictedAffinity Capture-MS | FSW = 0.0063
| Unknown | GRF3 (GENERAL REGULATORY FACTOR 3) ATP BINDING / PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING |
AT1G73230 | PredictedAffinity Capture-MS | FSW = 0.0131
| Unknown | NASCENT POLYPEPTIDE-ASSOCIATED COMPLEX (NAC) DOMAIN-CONTAINING PROTEIN |
AT5G52640 | Predictedsynthetic growth defect | FSW = 0.0091
| Unknown | ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING |
AT5G66710 | PredictedGene fusion method | FSW = 0.1616
| Unknown | PROTEIN KINASE PUTATIVE |
AT1G10430 | PredictedGene fusion method | FSW = 0.0227
| Unknown | PP2A-2 PROTEIN SERINE/THREONINE PHOSPHATASE |
AT1G59830 | PredictedGene fusion method | FSW = 0.0441
| Unknown | PP2A-1 PROTEIN SERINE/THREONINE PHOSPHATASE |
AT2G07727 | Predictedinterologs mapping | FSW = 0.0136
| Unknown | CYTOCHROME B (MTCYB) (COB) (CYTB) |
AT2G47640 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.0840
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN D2 PUTATIVE / SNRNP CORE PROTEIN D2 PUTATIVE / SM PROTEIN D2 PUTATIVE |
AT3G50670 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-Westerninteraction prediction | FSW = 0.1261
| Unknown | U1-70K (U1 SMALL NUCLEAR RIBONUCLEOPROTEIN-70K) RNA BINDING / NUCLEIC ACID BINDING / NUCLEOTIDE BINDING |
AT4G30220 | PredictedAffinity Capture-MS | FSW = 0.1796
| Unknown | RUXF (SMALL NUCLEAR RIBONUCLEOPROTEIN F) |
AT5G44200 | PredictedAffinity Capture-MSAffinity Capture-MSSynthetic Lethalityinteraction prediction | FSW = 0.1943
| Unknown | CBP20 (CAP-BINDING PROTEIN 20) RNA BINDING / RNA CAP BINDING |
AT1G20580 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.1416
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE |
AT1G04510 | PredictedCo-purification | FSW = 0.0895
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT3G06720 | Predictedinteraction prediction | FSW = 0.0311
| Unknown | IMPA-1 (IMPORTIN ALPHA ISOFORM 1) BINDING / PROTEIN TRANSPORTER |
AT1G11630 | PredictedGene fusion method | FSW = 0.0730
| Unknown | PENTATRICOPEPTIDE (PPR) REPEAT-CONTAINING PROTEIN |
AT5G17400 | PredictedGene fusion method | FSW = 0.1119
| Unknown | ER-ANT1 (ENDOPLASMIC RETICULUM-DENINE NUCLEOTIDE TRANSPORTER 1) ATPADP ANTIPORTER/ BINDING |
AT5G47720 | PredictedGene fusion method | FSW = 0.0211
| Unknown | ACETYL-COA C-ACYLTRANSFERASE PUTATIVE / 3-KETOACYL-COA THIOLASE PUTATIVE |
AT5G25490 | Predictedtwo hybrid | FSW = 0.0483
| Unknown | ZINC FINGER (RAN-BINDING) FAMILY PROTEIN |
AT3G25230 | PredictedAffinity Capture-MS | FSW = 0.0164
| Unknown | ROF1 (ROTAMASE FKBP 1) FK506 BINDING / CALMODULIN BINDING / PEPTIDYL-PROLYL CIS-TRANS ISOMERASE |
AT4G31870 | PredictedAffinity Capture-MS | FSW = 0.0441
| Unknown | ATGPX7 (GLUTATHIONE PEROXIDASE 7) GLUTATHIONE PEROXIDASE |
AT2G43790 | PredictedPhenotypic Enhancement | FSW = 0.0180
| Unknown | ATMPK6 (ARABIDOPSIS THALIANA MAP KINASE 6) MAP KINASE/ KINASE |
AT1G44910 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2157
| Unknown | PROTEIN BINDING |
AT1G02690 | PredictedAffinity Capture-MS | FSW = 0.0336
| Unknown | IMPA-6 (IMPORTIN ALPHA ISOFORM 6) BINDING / PROTEIN TRANSPORTER |
AT3G03340 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.2126
| Unknown | UNE6 (UNFERTILIZED EMBRYO SAC 6) |
AT5G40490 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0540
| Unknown | RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN |
AT1G22760 | PredictedAffinity Capture-MS | FSW = 0.0596
| Unknown | PAB3 (POLY(A) BINDING PROTEIN 3) RNA BINDING / TRANSLATION INITIATION FACTOR |
AT2G32600 | PredictedAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.0489
| Unknown | HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY PROTEIN |
AT1G04080 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.2317
| Unknown | PRP39 BINDING |
AT3G19670 | Predictedinteraction prediction | FSW = 0.0483
| Unknown | PROTEIN BINDING |
AT5G54900 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.0423
| Unknown | ATRBP45A (RNA-BINDING PROTEIN 45A) RNA BINDING |
AT3G14580 | PredictedGene fusion method | FSW = 0.2606
| Unknown | PENTATRICOPEPTIDE (PPR) REPEAT-CONTAINING PROTEIN |
AT5G23340 | PredictedGene fusion method | FSW = 0.2979
| Unknown | INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 24 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S LEUCINE-RICH REPEAT CYSTEINE-CONTAINING SUBTYPE (INTERPROIPR006553) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS F-BOX FAMILY PROTEIN (FBL4) (TAIRAT4G154751) HAS 9095 BLAST HITS TO 3545 PROTEINS IN 210 SPECIES ARCHAE - 0 BACTERIA - 454 METAZOA - 4575 FUNGI - 774 PLANTS - 2118 VIRUSES - 15 OTHER EUKARYOTES - 1159 (SOURCE NCBI BLINK) |
AT3G26770 | PredictedGene fusion method | FSW = 0.0190
| Unknown | SHORT-CHAIN DEHYDROGENASE/REDUCTASE (SDR) FAMILY PROTEIN |
AT5G26751 | PredictedGene fusion method | FSW = 0.0696
| Unknown | ATSK11 PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454