Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT2G07727 - ( cytochrome b (MTCYB) (COB) (CYTB) )

25 Proteins interacs with AT2G07727
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT3G02090

Experimental

FSW = 0.0533

Class A:

nucleus

Class B:

vacuole

unclear

plastid

mitochondrion

Class D:

mitochondrion (p = 0.82)

 MITOCHONDRIAL PROCESSING PEPTIDASE BETA SUBUNIT PUTATIVE
AT1G51980

Experimental

FSW = 0.1185

Class B:

vacuole

unclear

plastid

nucleus

mitochondrion

Class D:

plastid (p = 0.78)

mitochondrion (p = 0.82)

 MITOCHONDRIAL PROCESSING PEPTIDASE ALPHA SUBUNIT PUTATIVE
AT4G32470

Experimental

FSW = 0.0211

Class B:

vacuole

unclear

nucleus

mitochondrion

Class D:

mitochondrion (p = 0.82)

 UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX 14 KDA PROTEIN PUTATIVE
AT3G27240

Experimental

FSW = 0.1422

Class B:

vacuole

plasma membrane

nucleus

mitochondrion

Class D:

plastid (p = 0.78)

mitochondrion (p = 0.82)

 CYTOCHROME C1 PUTATIVE
AT5G40810

Experimental

FSW = 0.1875

Class B:

vacuole

nucleus

mitochondrion

Class D:

plastid (p = 0.78)

mitochondrion (p = 0.82)

 CYTOCHROME C1 PUTATIVE
AT2G40765

Experimental

FSW = 0.1429

Class B:

nucleus

mitochondrion

Class D:

plastid (p = 0.78)

mitochondrion (p = 0.82)

extracellular (p = 0.86)

 UNKNOWN PROTEIN
AT5G13430

Experimental

FSW = 0.1422

Class B:

nucleus

mitochondrion

Class D:

plastid (p = 0.78)

mitochondrion (p = 0.82)

extracellular (p = 0.86)

 UBIQUINOL-CYTOCHROME C REDUCTASE IRON-SULFUR SUBUNIT MITOCHONDRIAL PUTATIVE / RIESKE IRON-SULFUR PROTEIN PUTATIVE
AT3G10860

Experimental

FSW = 0.1429

Class B:

nucleus

mitochondrion

Class D:

plastid (p = 0.78)

mitochondrion (p = 0.82)

 UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX UBIQUINONE-BINDING PROTEIN PUTATIVE / UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX 82 KDA PROTEIN PUTATIVE
AT5G25450

Experimental

FSW = 0.2133

Class B:

nucleus

mitochondrion

Class D:

mitochondrion (p = 0.82)

 UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX 14 KDA PROTEIN PUTATIVE
AT3G52730

Experimental

FSW = 0.1429

Class B:

nucleus

mitochondrion

Class D:

mitochondrion (p = 0.82)

 UBIQUINOL-CYTOCHROME C REDUCTASE UQCRX/QCR9-LIKE FAMILY PROTEIN
AT5G59613

Experimental

FSW = 0.0952

Unknown

 UNKNOWN PROTEIN
AT3G16890

Experimental

co-fractionation

Co-fractionation

co-fractionation

Co-fractionation

FSW = 0.3137

Unknown

 PPR40 (PENTATRICOPEPTIDE (PPR) DOMAIN PROTEIN 40)
AT5G64960

Predicted

Affinity Capture-MS

FSW = 0.0336

Unknown

 CDKC2 (CYCLIN DEPENDENT KINASE GROUP C 2) KINASE
AT1G31190

Predicted

interologs mapping

FSW = 0.0229

Unknown

 IMPL1 (MYO-INOSITOL MONOPHOSPHATASE LIKE 1) 3(2)5-BISPHOSPHATE NUCLEOTIDASE/ INOSITOL OR PHOSPHATIDYLINOSITOL PHOSPHATASE/ INOSITOL-1(OR 4)-MONOPHOSPHATASE
AT1G30690

Predicted

Affinity Capture-Western

FSW = 0.1143

Unknown

 SEC14 CYTOSOLIC FACTOR FAMILY PROTEIN / PHOSPHOGLYCERIDE TRANSFER FAMILY PROTEIN
AT5G47010

Predicted

interologs mapping

FSW = 0.0124

Unknown

 LBA1 (LOW-LEVEL BETA-AMYLASE 1) ATP BINDING / DNA BINDING / RNA HELICASE/ HYDROLASE
AT4G14350

Predicted

two hybrid

two hybrid

FSW = 0.0084

Unknown

 PROTEIN KINASE FAMILY PROTEIN
AT2G46470

Predicted

Affinity Capture-Western

FSW = 0.0970

Unknown

 OXA1L (INNER MEMBRANE PROTEIN OXA1-LIKE)
AT3G28730

Predicted

interologs mapping

Synthetic Rescue

FSW = 0.0065

Unknown

 ATHMG (ARABIDOPSIS THALIANA HIGH MOBILITY GROUP) TRANSCRIPTION FACTOR
AT3G50940

Predicted

Affinity Capture-Western

FSW = 0.0306

Unknown

 AAA-TYPE ATPASE FAMILY PROTEIN
AT4G19003

Predicted

Affinity Capture-Western

FSW = 0.0147

Unknown

 VPS25
AT4G22756

Predicted

co-fractionation

Co-fractionation

FSW = 0.0163

Unknown

 SMO1-2 (STEROL C4-METHYL OXIDASE 1-2) 44-DIMETHYL-9BETA19-CYCLOPROPYLSTEROL-4ALPHA-METHYL OXIDASE/ C-4 METHYLSTEROL OXIDASE/ CATALYTIC
AT5G46180

Predicted

two hybrid

Phenotypic Suppression

FSW = 0.0229

Unknown

 DELTA-OAT ORNITHINE-OXO-ACID TRANSAMINASE
AT1G43910

Predicted

Affinity Capture-Western

FSW = 0.0184

Unknown

 AAA-TYPE ATPASE FAMILY PROTEIN
AT1G11650

Predicted

interologs mapping

FSW = 0.0136

Unknown

 RNA-BINDING PROTEIN 45 (RBP45) PUTATIVE

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454

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