Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Welcome to AtPIN
AtPIN will be upgraded. Please send your suggestions here
AT1G43910 - ( AAA-type ATPase family protein )
28 Proteins interacs with AT1G43910Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT2G01250 | Predictedtwo hybrid | FSW = 0.0196
| Unknown | 60S RIBOSOMAL PROTEIN L7 (RPL7B) |
AT3G62870 | Predictedsynthetic growth defect | FSW = 0.0301
| Unknown | 60S RIBOSOMAL PROTEIN L7A (RPL7AB) |
AT1G74560 | PredictedSynthetic LethalitySynthetic LethalitySynthetic LethalityPhenotypic Enhancement | FSW = 0.2843
| Unknown | NRP1 (NAP1-RELATED PROTEIN 1) DNA BINDING / CHROMATIN BINDING / HISTONE BINDING |
AT3G22890 | PredictedSynthetic LethalitySynthetic LethalitySynthetic LethalitySynthetic LethalityPhenotypic Enhancement | FSW = 0.2013
| Unknown | APS1 (ATP SULFURYLASE 1) SULFATE ADENYLYLTRANSFERASE (ATP) |
AT4G33650 | PredictedAffinity Capture-WesternAffinity Capture-Western | FSW = 0.2744
| Unknown | DRP3A (DYNAMIN-RELATED PROTEIN 3A) GTP BINDING / GTPASE/ PHOSPHOINOSITIDE BINDING |
AT5G25400 | PredictedSynthetic Lethalitysynthetic growth defect | FSW = 0.2525
| Unknown | PHOSPHATE TRANSLOCATOR-RELATED |
AT5G51820 | PredictedSynthetic LethalityPhenotypic Enhancement | FSW = 0.1992
| Unknown | PGM (PHOSPHOGLUCOMUTASE) PHOSPHOGLUCOMUTASE |
AT1G10070 | Predictedtwo hybrid | FSW = 0.0389
| Unknown | ATBCAT-2 (ARABIDOPSIS THALIANA BRANCHED-CHAIN AMINO ACID TRANSAMINASE 2) BRANCHED-CHAIN-AMINO-ACID TRANSAMINASE/ CATALYTIC |
AT1G48860 | PredictedSynthetic Rescue | FSW = 0.2337
| Unknown | 3-PHOSPHOSHIKIMATE 1-CARBOXYVINYLTRANSFERASE PUTATIVE / 5-ENOLPYRUVYLSHIKIMATE-3-PHOSPHATE PUTATIVE / EPSP SYNTHASE PUTATIVE |
AT3G53870 | Predictedbiochemical | FSW = 0.0213
| Unknown | 40S RIBOSOMAL PROTEIN S3 (RPS3B) |
AT1G80050 | PredictedSynthetic LethalityPhenotypic Enhancement | FSW = 0.1979
| Unknown | APT2 (ADENINE PHOSPHORIBOSYL TRANSFERASE 2) ADENINE PHOSPHORIBOSYLTRANSFERASE/ PHOSPHATE TRANSMEMBRANE TRANSPORTER |
AT2G07727 | PredictedAffinity Capture-Western | FSW = 0.0184
| Unknown | CYTOCHROME B (MTCYB) (COB) (CYTB) |
AT1G50400 | PredictedAffinity Capture-Western | FSW = 0.0345
| Unknown | PORIN FAMILY PROTEIN |
AT5G02730 | PredictedPhenotypic Enhancement | FSW = 0.0320
| Unknown | ALLERGEN V5/TPX-1-RELATED FAMILY PROTEIN |
AT2G19980 | PredictedPhenotypic Enhancement | FSW = 0.1025
| Unknown | ALLERGEN V5/TPX-1-RELATED FAMILY PROTEIN |
AT2G42120 | Predictedsynthetic growth defect | FSW = 0.2223
| Unknown | POLD2 (DNA POLYMERASE DELTA SMALL SUBUNIT) DNA BINDING / DNA-DIRECTED DNA POLYMERASE |
AT1G35350 | PredictedSynthetic Lethalitysynthetic growth defect | FSW = 0.2204
| Unknown | LOCATED IN INTEGRAL TO MEMBRANE EXPRESSED IN 18 PLANT STRUCTURES EXPRESSED DURING 9 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S EXS C-TERMINAL (INTERPROIPR004342) SPX N-TERMINAL (INTERPROIPR004331) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS EXS FAMILY PROTEIN / ERD1/XPR1/SYG1 FAMILY PROTEIN (TAIRAT1G267301) HAS 734 BLAST HITS TO 697 PROTEINS IN 158 SPECIES ARCHAE - 0 BACTERIA - 21 METAZOA - 234 FUNGI - 245 PLANTS - 125 VIRUSES - 0 OTHER EUKARYOTES - 109 (SOURCE NCBI BLINK) |
AT1G52500 | PredictedSynthetic Lethalitysynthetic growth defectPhenotypic Enhancement | FSW = 0.2089
| Unknown | ATMMH-1 (ARABIDOPSIS THALIANA MUTM HOMOLOG-1) DNA N-GLYCOSYLASE |
AT2G01600 | PredictedSynthetic LethalityPhenotypic Enhancementsynthetic growth defect | FSW = 0.3808
| Unknown | EPSIN N-TERMINAL HOMOLOGY (ENTH) DOMAIN-CONTAINING PROTEIN |
AT2G32160 | PredictedSynthetic LethalityPhenotypic Enhancement | FSW = 0.2568
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 19 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S N2227-LIKE (INTERPROIPR012901) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT2G321701) HAS 325 BLAST HITS TO 315 PROTEINS IN 141 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 95 FUNGI - 130 PLANTS - 30 VIRUSES - 0 OTHER EUKARYOTES - 70 (SOURCE NCBI BLINK) |
AT2G48100 | PredictedSynthetic Lethality | FSW = 0.1848
| Unknown | EXONUCLEASE FAMILY PROTEIN |
AT3G22290 | PredictedSynthetic LethalitySynthetic Lethalitysynthetic growth defectPhenotypic Enhancement | FSW = 0.1808
| Unknown | UNKNOWN PROTEIN |
AT3G59540 | PredictedSynthetic LethalityPhenotypic Enhancement | FSW = 0.1869
| Unknown | 60S RIBOSOMAL PROTEIN L38 (RPL38B) |
AT4G27130 | PredictedSynthetic Lethality | FSW = 0.1401
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1 PUTATIVE |
AT5G04800 | PredictedPhenotypic Enhancement | FSW = 0.0619
| Unknown | 40S RIBOSOMAL PROTEIN S17 (RPS17D) |
AT5G58380 | PredictedPhenotypic Enhancement | FSW = 0.0235
| Unknown | SIP1 (SOS3-INTERACTING PROTEIN 1) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT5G06420 | Predictedinterologs mapping | FSW = 0.0065
| Unknown | ZINC FINGER (CCCH-TYPE/C3HC4-TYPE RING FINGER) FAMILY PROTEIN |
AT3G25670 | PredictedGene fusion method | FSW = 0.0430
| Unknown | LEUCINE-RICH REPEAT FAMILY PROTEIN |
Downloads
Quick help
Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454