Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT2G01600 - ( epsin N-terminal homology (ENTH) domain-containing protein )

48 Proteins interacs with AT2G01600
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT3G57990

Predicted

Synthetic Lethality

FSW = 0.1338

Unknown

UNKNOWN PROTEIN
AT3G62870

Predicted

synthetic growth defect

FSW = 0.0306

Unknown

60S RIBOSOMAL PROTEIN L7A (RPL7AB)
AT5G13450

Predicted

Synthetic Lethality

FSW = 0.0403

Unknown

ATP SYNTHASE DELTA CHAIN MITOCHONDRIAL PUTATIVE / H(+)-TRANSPORTING TWO-SECTOR ATPASE DELTA (OSCP) SUBUNIT PUTATIVE
AT2G29990

Predicted

Affinity Capture-MS

FSW = 0.0082

Unknown

NDA2 (ALTERNATIVE NAD(P)H DEHYDROGENASE 2) FAD BINDING / NADH DEHYDROGENASE/ OXIDOREDUCTASE
AT3G08530

Predicted

Affinity Capture-Western

Colocalization

FSW = 0.0084

Unknown

CLATHRIN HEAVY CHAIN PUTATIVE
AT3G22890

Predicted

Synthetic Lethality

synthetic growth defect

Phenotypic Enhancement

FSW = 0.2914

Unknown

APS1 (ATP SULFURYLASE 1) SULFATE ADENYLYLTRANSFERASE (ATP)
AT4G33650

Predicted

Synthetic Lethality

Synthetic Lethality

Synthetic Lethality

synthetic growth defect

Phenotypic Enhancement

FSW = 0.2566

Unknown

DRP3A (DYNAMIN-RELATED PROTEIN 3A) GTP BINDING / GTPASE/ PHOSPHOINOSITIDE BINDING
AT5G25400

Predicted

Synthetic Lethality

Synthetic Lethality

Phenotypic Enhancement

FSW = 0.3713

Unknown

PHOSPHATE TRANSLOCATOR-RELATED
AT5G51820

Predicted

Synthetic Lethality

Phenotypic Enhancement

FSW = 0.3220

Unknown

PGM (PHOSPHOGLUCOMUTASE) PHOSPHOGLUCOMUTASE
AT1G48860

Predicted

Synthetic Lethality

Phenotypic Enhancement

FSW = 0.2545

Unknown

3-PHOSPHOSHIKIMATE 1-CARBOXYVINYLTRANSFERASE PUTATIVE / 5-ENOLPYRUVYLSHIKIMATE-3-PHOSPHATE PUTATIVE / EPSP SYNTHASE PUTATIVE
AT1G67120Predicted

Affinity Capture-MS

FSW = 0.0083

Unknown

ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / TRANSCRIPTION FACTOR BINDING
AT5G63980

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0144

Unknown

SAL1 3(2)5-BISPHOSPHATE NUCLEOTIDASE/ INOSITOL OR PHOSPHATIDYLINOSITOL PHOSPHATASE
AT5G38480

Predicted

Affinity Capture-MS

FSW = 0.0195

Unknown

GRF3 (GENERAL REGULATORY FACTOR 3) ATP BINDING / PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING
AT1G45145

Predicted

Phenotypic Enhancement

FSW = 0.1211

Unknown

ATTRX5 OXIDOREDUCTASE ACTING ON SULFUR GROUP OF DONORS DISULFIDE AS ACCEPTOR
AT5G60540

Predicted

Synthetic Lethality

Phenotypic Enhancement

FSW = 0.2491

Unknown

PDX2 (PYRIDOXINE BIOSYNTHESIS 2) GLUTAMINASE/ GLUTAMINYL-TRNA SYNTHASE (GLUTAMINE-HYDROLYZING)/ PROTEIN HETERODIMERIZATION
AT5G52640

Predicted

synthetic growth defect

FSW = 0.0077

Unknown

ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING
AT3G03800

Predicted

two hybrid

FSW = 0.0277

Unknown

SYP131 (SYNTAXIN OF PLANTS 131) SNAP RECEPTOR
AT4G08800Predicted

Synthetic Lethality

Phenotypic Enhancement

FSW = 0.2444

Unknown

PROTEIN KINASE PUTATIVE
AT1G21630

Predicted

in vitro

Co-expression

FSW = 0.0143

Unknown

CALCIUM-BINDING EF HAND FAMILY PROTEIN
AT1G80050

Predicted

Synthetic Lethality

Phenotypic Enhancement

FSW = 0.2801

Unknown

APT2 (ADENINE PHOSPHORIBOSYL TRANSFERASE 2) ADENINE PHOSPHORIBOSYLTRANSFERASE/ PHOSPHATE TRANSMEMBRANE TRANSPORTER
AT3G08720

Predicted

Phenotypic Enhancement

interologs mapping

FSW = 0.1189

Unknown

S6K2 (ARABIDOPSIS THALIANA SERINE/THREONINE PROTEIN KINASE 2) KINASE/ PROTEIN KINASE
AT1G79020

Predicted

Synthetic Lethality

FSW = 0.1556

Unknown

TRANSCRIPTION FACTOR-RELATED
AT4G22380

Predicted

Affinity Capture-MS

FSW = 0.0087

Unknown

RIBOSOMAL PROTEIN L7AE/L30E/S12E/GADD45 FAMILY PROTEIN
AT2G30160

Predicted

Synthetic Lethality

Synthetic Lethality

Phenotypic Enhancement

FSW = 0.2226

Unknown

MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN
AT4G39200

Predicted

Synthetic Lethality

Synthetic Lethality

Phenotypic Enhancement

FSW = 0.1936

Unknown

40S RIBOSOMAL PROTEIN S25 (RPS25E)
AT2G42120

Predicted

Affinity Capture-Western

interologs mapping

Affinity Capture-MS

FSW = 0.2831

Unknown

POLD2 (DNA POLYMERASE DELTA SMALL SUBUNIT) DNA BINDING / DNA-DIRECTED DNA POLYMERASE
AT1G21370

Predicted

Phenotypic Enhancement

FSW = 0.1080

Unknown

UNKNOWN PROTEIN
AT1G23460

Predicted

Phenotypic Enhancement

FSW = 0.1409

Unknown

POLYGALACTURONASE
AT1G29970

Predicted

Phenotypic Suppression

FSW = 0.0397

Unknown

RPL18AA (60S RIBOSOMAL PROTEIN L18A-1)
AT1G35350

Predicted

Synthetic Lethality

Phenotypic Enhancement

synthetic growth defect

FSW = 0.2291

Unknown

LOCATED IN INTEGRAL TO MEMBRANE EXPRESSED IN 18 PLANT STRUCTURES EXPRESSED DURING 9 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S EXS C-TERMINAL (INTERPROIPR004342) SPX N-TERMINAL (INTERPROIPR004331) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS EXS FAMILY PROTEIN / ERD1/XPR1/SYG1 FAMILY PROTEIN (TAIRAT1G267301) HAS 734 BLAST HITS TO 697 PROTEINS IN 158 SPECIES ARCHAE - 0 BACTERIA - 21 METAZOA - 234 FUNGI - 245 PLANTS - 125 VIRUSES - 0 OTHER EUKARYOTES - 109 (SOURCE NCBI BLINK)
AT1G43910

Predicted

Synthetic Lethality

Phenotypic Enhancement

synthetic growth defect

FSW = 0.3808

Unknown

AAA-TYPE ATPASE FAMILY PROTEIN
AT1G52500

Predicted

Synthetic Lethality

Phenotypic Enhancement

FSW = 0.3221

Unknown

ATMMH-1 (ARABIDOPSIS THALIANA MUTM HOMOLOG-1) DNA N-GLYCOSYLASE
AT2G37420

Predicted

Synthetic Lethality

Synthetic Lethality

Phenotypic Enhancement

FSW = 0.2081

Unknown

KINESIN MOTOR PROTEIN-RELATED
AT2G48100

Predicted

Synthetic Lethality

Phenotypic Enhancement

FSW = 0.2771

Unknown

EXONUCLEASE FAMILY PROTEIN
AT3G13720

Predicted

Synthetic Lethality

interologs mapping

Phenotypic Enhancement

FSW = 0.2861

Unknown

PRA8
AT3G22290

Predicted

Synthetic Lethality

synthetic growth defect

Phenotypic Enhancement

FSW = 0.2027

Unknown

UNKNOWN PROTEIN
AT3G59540Predicted

Synthetic Lethality

Phenotypic Enhancement

FSW = 0.2906

Unknown

60S RIBOSOMAL PROTEIN L38 (RPL38B)
AT4G27130

Predicted

synthetic growth defect

Synthetic Lethality

FSW = 0.1908

Unknown

EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1 PUTATIVE
AT4G32930

Predicted

Synthetic Lethality

FSW = 0.1862

Unknown

UNKNOWN PROTEIN
AT4G35560

Predicted

two hybrid

FSW = 0.0183

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN LOCATED IN CUL4 RING UBIQUITIN LIGASE COMPLEX EXPRESSED IN 20 PLANT STRUCTURES EXPRESSED DURING 7 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S WD40 REPEAT-LIKE (INTERPROIPR011046) WD40 REPEAT (INTERPROIPR001680) WD40/YVTN REPEAT-LIKE (INTERPROIPR015943) LETHAL GIANT LARVAE (LGL) LIKE C-TERMINAL (INTERPROIPR013905) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN (TAIRAT5G055701) HAS 562 BLAST HITS TO 546 PROTEINS IN 129 SPECIES ARCHAE - 0 BACTERIA - 20 METAZOA - 305 FUNGI - 89 PLANTS - 43 VIRUSES - 0 OTHER EUKARYOTES - 105 (SOURCE NCBI BLINK)
AT5G14060

Predicted

Synthetic Lethality

Synthetic Lethality

Synthetic Lethality

Phenotypic Enhancement

FSW = 0.2147

Unknown

CARAB-AK-LYS AMINO ACID BINDING / ASPARTATE KINASE
AT3G27440

Predicted

Phenotypic Enhancement

FSW = 0.1226

Unknown

URACIL PHOSPHORIBOSYLTRANSFERASE PUTATIVE / UMP PYROPHOSPHORYLASE PUTATIVE / UPRTASE PUTATIVE
AT3G50780

Predicted

Phenotypic Enhancement

FSW = 0.0929

Unknown

INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS PRLI-INTERACTING FACTOR-RELATED (TAIRAT1G638501) HAS 173 BLAST HITS TO 173 PROTEINS IN 14 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 8 FUNGI - 0 PLANTS - 164 VIRUSES - 0 OTHER EUKARYOTES - 1 (SOURCE NCBI BLINK)
AT4G19880

Predicted

Phenotypic Enhancement

FSW = 0.1832

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN RESPONSE TO CADMIUM ION LOCATED IN CHLOROPLAST EXPRESSED IN 23 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S GLUTATHIONE S-TRANSFERASE PREDICTED (INTERPROIPR016639) GLUTATHIONE S-TRANSFERASE C-TERMINAL (INTERPROIPR004046) GLUTATHIONE S-TRANSFERASE C-TERMINAL-LIKE (INTERPROIPR010987) GLUTATHIONE S-TRANSFERASE/CHLORIDE CHANNEL C-TERMINAL (INTERPROIPR017933) THIOREDOXIN-LIKE FOLD (INTERPROIPR012336) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT5G450201) HAS 1635 BLAST HITS TO 1635 PROTEINS IN 489 SPECIES ARCHAE - 12 BACTERIA - 905 METAZOA - 23 FUNGI - 158 PLANTS - 57 VIRUSES - 0 OTHER EUKARYOTES - 480 (SOURCE NCBI BLINK)
AT5G01770

Predicted

Phenotypic Enhancement

FSW = 0.1004

Unknown

RAPTOR2 (RAPTOR2) BINDING / NUCLEOTIDE BINDING
AT5G04800

Predicted

Phenotypic Enhancement

FSW = 0.0621

Unknown

40S RIBOSOMAL PROTEIN S17 (RPS17D)
AT5G19660

Predicted

two hybrid

FSW = 0.0041

Unknown

S1P (SITE-1 PROTEASE) ENDOPEPTIDASE/ SERINE-TYPE ENDOPEPTIDASE
AT5G53300

Predicted

Phenotypic Enhancement

FSW = 0.0274

Unknown

UBC10 (UBIQUITIN-CONJUGATING ENZYME 10) UBIQUITIN-PROTEIN LIGASE

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Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454