Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT4G32930 - ( unknown protein )
20 Proteins interacs with AT4G32930Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT1G07890 | PredictedSynthetic Lethality | FSW = 0.1358
| Unknown | APX1 (ASCORBATE PEROXIDASE 1) L-ASCORBATE PEROXIDASE |
AT3G22890 | PredictedSynthetic LethalitySynthetic Lethality | FSW = 0.1000
| Unknown | APS1 (ATP SULFURYLASE 1) SULFATE ADENYLYLTRANSFERASE (ATP) |
AT5G51820 | PredictedPhenotypic EnhancementSynthetic Lethality | FSW = 0.0766
| Unknown | PGM (PHOSPHOGLUCOMUTASE) PHOSPHOGLUCOMUTASE |
AT3G53780 | Predictedtwo hybrid | FSW = 0.0994
| Unknown | RHOMBOID FAMILY PROTEIN |
AT1G80050 | PredictedSynthetic Lethality | FSW = 0.1250
| Unknown | APT2 (ADENINE PHOSPHORIBOSYL TRANSFERASE 2) ADENINE PHOSPHORIBOSYLTRANSFERASE/ PHOSPHATE TRANSMEMBRANE TRANSPORTER |
AT5G47120 | Predictedtwo hybridtwo hybrid | FSW = 0.0435
| Unknown | ATBI1 (BAX INHIBITOR 1) |
AT5G66590 | PredictedPhenotypic Enhancement | FSW = 0.0357
| Unknown | ALLERGEN V5/TPX-1-RELATED FAMILY PROTEIN |
AT4G30800 | PredictedAffinity Capture-MS | FSW = 0.0143
| Unknown | 40S RIBOSOMAL PROTEIN S11 (RPS11B) |
AT5G47130 | Predictedtwo hybrid | FSW = 0.0345
| Unknown | BAX INHIBITOR-1 FAMILY / BI-1 FAMILY |
AT1G06550 | PredictedSynthetic Lethality | FSW = 0.0484
| Unknown | ENOYL-COA HYDRATASE/ISOMERASE FAMILY PROTEIN |
AT1G08630 | PredictedPhenotypic Enhancement | FSW = 0.0331
| Unknown | THA1 (THREONINE ALDOLASE 1) ALDEHYDE-LYASE/ THREONINE ALDOLASE |
AT1G34340 | PredictedPhenotypic Enhancement | FSW = 0.0217
| Unknown | ESTERASE/LIPASE/THIOESTERASE FAMILY PROTEIN |
AT1G52500 | PredictedPhenotypic EnhancementSynthetic Lethality | FSW = 0.0956
| Unknown | ATMMH-1 (ARABIDOPSIS THALIANA MUTM HOMOLOG-1) DNA N-GLYCOSYLASE |
AT2G01600 | PredictedSynthetic Lethality | FSW = 0.1862
| Unknown | EPSIN N-TERMINAL HOMOLOGY (ENTH) DOMAIN-CONTAINING PROTEIN |
AT2G48100 | PredictedSynthetic Lethality | FSW = 0.1000
| Unknown | EXONUCLEASE FAMILY PROTEIN |
AT3G14370 | PredictedPhenotypic Enhancement | FSW = 0.1071
| Unknown | WAG2 KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT3G59540 | PredictedSynthetic Lethality | FSW = 0.0849
| Unknown | 60S RIBOSOMAL PROTEIN L38 (RPL38B) |
AT4G23895 | PredictedSynthetic Lethality | FSW = 0.0455
| Unknown | PLECKSTRIN HOMOLOGY (PH) DOMAIN-CONTAINING PROTEIN-RELATED |
AT3G62770 | PredictedSynthetic Lethality | FSW = 0.0055
| Unknown | ATATG18A |
AT4G19880 | PredictedSynthetic Lethality | FSW = 0.1367
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN RESPONSE TO CADMIUM ION LOCATED IN CHLOROPLAST EXPRESSED IN 23 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S GLUTATHIONE S-TRANSFERASE PREDICTED (INTERPROIPR016639) GLUTATHIONE S-TRANSFERASE C-TERMINAL (INTERPROIPR004046) GLUTATHIONE S-TRANSFERASE C-TERMINAL-LIKE (INTERPROIPR010987) GLUTATHIONE S-TRANSFERASE/CHLORIDE CHANNEL C-TERMINAL (INTERPROIPR017933) THIOREDOXIN-LIKE FOLD (INTERPROIPR012336) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT5G450201) HAS 1635 BLAST HITS TO 1635 PROTEINS IN 489 SPECIES ARCHAE - 12 BACTERIA - 905 METAZOA - 23 FUNGI - 158 PLANTS - 57 VIRUSES - 0 OTHER EUKARYOTES - 480 (SOURCE NCBI BLINK) |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454