Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT4G30800 - ( 40S ribosomal protein S11 (RPS11B) )

101 Proteins interacs with AT4G30800
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT3G04920

Predicted

Affinity Capture-MS

FSW = 0.2462

Unknown

40S RIBOSOMAL PROTEIN S24 (RPS24A)
AT2G18020

Predicted

Affinity Capture-MS

FSW = 0.2680

Unknown

EMB2296 (EMBRYO DEFECTIVE 2296) STRUCTURAL CONSTITUENT OF RIBOSOME
AT4G31700

Predicted

Affinity Capture-MS

FSW = 0.3247

Unknown

RPS6 (RIBOSOMAL PROTEIN S6) STRUCTURAL CONSTITUENT OF RIBOSOME
AT3G09630

Predicted

Affinity Capture-MS

FSW = 0.1748

Unknown

60S RIBOSOMAL PROTEIN L4/L1 (RPL4A)
AT2G42740

Predicted

Affinity Capture-MS

FSW = 0.3009

Unknown

RPL16A STRUCTURAL CONSTITUENT OF RIBOSOME
AT2G17360

Predicted

Affinity Capture-MS

FSW = 0.3046

Unknown

40S RIBOSOMAL PROTEIN S4 (RPS4A)
AT5G15200

Predicted

Affinity Capture-MS

FSW = 0.3407

Unknown

40S RIBOSOMAL PROTEIN S9 (RPS9B)
AT2G47610

Predicted

biochemical

FSW = 0.1900

Unknown

60S RIBOSOMAL PROTEIN L7A (RPL7AA)
AT3G49010

Predicted

Affinity Capture-MS

FSW = 0.1844

Unknown

ATBBC1 (ARABIDOPSIS THALIANA BREAST BASIC CONSERVED 1) STRUCTURAL CONSTITUENT OF RIBOSOME
AT2G37270

Predicted

Affinity Capture-MS

FSW = 0.2818

Unknown

ATRPS5B (RIBOSOMAL PROTEIN 5B) STRUCTURAL CONSTITUENT OF RIBOSOME
AT1G07770

Predicted

Affinity Capture-MS

FSW = 0.3270

Unknown

RPS15A (RIBOSOMAL PROTEIN S15A) STRUCTURAL CONSTITUENT OF RIBOSOME
AT2G34480

Predicted

Affinity Capture-MS

FSW = 0.2140

Unknown

60S RIBOSOMAL PROTEIN L18A (RPL18AB)
AT1G66580

Predicted

Affinity Capture-MS

FSW = 0.2525

Unknown

60S RIBOSOMAL PROTEIN L10 (RPL10C)
AT5G25780

Predicted

Affinity Capture-MS

FSW = 0.0805

Unknown

EIF3B-2 (EUKARYOTIC TRANSLATION INITIATION FACTOR 3B-2) NUCLEIC ACID BINDING / PROTEIN BINDING / TRANSLATION INITIATION FACTOR
AT4G18730Predicted

Affinity Capture-MS

FSW = 0.0642

Unknown

RPL16B STRUCTURAL CONSTITUENT OF RIBOSOME
AT5G20290

Predicted

Affinity Capture-MS

FSW = 0.4095

Unknown

40S RIBOSOMAL PROTEIN S8 (RPS8A)
AT3G14420

Predicted

Affinity Capture-MS

Affinity Capture-Western

Co-purification

FSW = 0.0554

Unknown

(S)-2-HYDROXY-ACID OXIDASE PEROXISOMAL PUTATIVE / GLYCOLATE OXIDASE PUTATIVE / SHORT CHAIN ALPHA-HYDROXY ACID OXIDASE PUTATIVE
AT3G45770

Predicted

two hybrid

FSW = 0.0031

Unknown

OXIDOREDUCTASE ZINC-BINDING DEHYDROGENASE FAMILY PROTEIN
AT1G74710

Predicted

synthetic growth defect

FSW = 0.0341

Unknown

ISOCHORISMATE SYNTHASE 1 (ICS1) / ISOCHORISMATE MUTASE
AT5G67630

Predicted

Affinity Capture-MS

FSW = 0.0212

Unknown

DNA HELICASE PUTATIVE
AT5G59690Predicted

Affinity Capture-MS

FSW = 0.0553

Unknown

HISTONE H4
AT3G13580

Predicted

Affinity Capture-MS

FSW = 0.2591

Unknown

60S RIBOSOMAL PROTEIN L7 (RPL7D)
AT3G04770

Predicted

Affinity Capture-MS

FSW = 0.0996

Unknown

RPSAB (40S RIBOSOMAL PROTEIN SA B) STRUCTURAL CONSTITUENT OF RIBOSOME
AT2G31810

Predicted

two hybrid

FSW = 0.0163

Unknown

ACETOLACTATE SYNTHASE SMALL SUBUNIT PUTATIVE
AT2G31910

Predicted

Affinity Capture-Western

two hybrid

Affinity Capture-Western

two hybrid

Reconstituted Complex

two hybrid

two hybrid

two hybrid

two hybrid

Affinity Capture-MS

Affinity Capture-Western

two hybrid

Reconstituted Complex

FSW = 0.1428

Unknown

ATCHX21 (CATION/H+ EXCHANGER 21) SODIUMHYDROGEN ANTIPORTER
AT3G58510

Predicted

Affinity Capture-MS

FSW = 0.1735

Unknown

DEAD BOX RNA HELICASE PUTATIVE (RH11)
AT5G23740

Predicted

Gene fusion method

Phylogenetic profile method

Co-expression

FSW = 0.0317

Unknown

RPS11-BETA (RIBOSOMAL PROTEIN S11-BETA) STRUCTURAL CONSTITUENT OF RIBOSOME
AT3G11510

Predicted

Affinity Capture-MS

FSW = 0.2779

Unknown

40S RIBOSOMAL PROTEIN S14 (RPS14B)
AT5G39740

Predicted

Affinity Capture-MS

FSW = 0.1131

Unknown

60S RIBOSOMAL PROTEIN L5 (RPL5B)
AT2G33370Predicted

two hybrid

two hybrid

two hybrid

two hybrid

two hybrid

two hybrid

Affinity Capture-MS

Protein-peptide

Reconstituted Complex

Co-crystal Structure

co-fractionation

Co-fractionation

FSW = 0.1808

Unknown

60S RIBOSOMAL PROTEIN L23 (RPL23B)
AT4G00100

Predicted

Affinity Capture-MS

FSW = 0.3470

Unknown

ATRPS13A (ARABIDOPSIS THALIANA RIBOSOMAL PROTEIN S13A) STRUCTURAL CONSTITUENT OF RIBOSOME
AT3G48930

Predicted

biochemical

Phylogenetic profile method

Co-expression

FSW = 0.0842

Unknown

EMB1080 (EMBRYO DEFECTIVE 1080) STRUCTURAL CONSTITUENT OF RIBOSOME
AT4G34670

Predicted

Affinity Capture-MS

FSW = 0.2652

Unknown

40S RIBOSOMAL PROTEIN S3A (RPS3AB)
AT1G75840

Predicted

biochemical

FSW = 0.0059

Unknown

ARAC5 (RAC-LIKE GTP BINDING PROTEIN 5) GTP BINDING / GTPASE
AT1G27450

Predicted

biochemical

FSW = 0.0151

Unknown

APT1 (ADENINE PHOSPHORIBOSYL TRANSFERASE 1) ADENINE PHOSPHORIBOSYLTRANSFERASE
AT4G36490

Predicted

biochemical

FSW = 0.0109

Unknown

SFH12 (SEC14-LIKE 12) PHOSPHATIDYLINOSITOL TRANSPORTER/ TRANSPORTER
AT1G75170

Predicted

two hybrid

FSW = 0.0199

Unknown

SEC14 CYTOSOLIC FACTOR FAMILY PROTEIN / PHOSPHOGLYCERIDE TRANSFER FAMILY PROTEIN
AT1G73180

Predicted

Affinity Capture-MS

FSW = 0.1116

Unknown

EUKARYOTIC TRANSLATION INITIATION FACTOR-RELATED
AT3G53870

Predicted

Affinity Capture-MS

FSW = 0.2997

Unknown

40S RIBOSOMAL PROTEIN S3 (RPS3B)
AT4G15000

Predicted

Affinity Capture-MS

FSW = 0.1823

Unknown

60S RIBOSOMAL PROTEIN L27 (RPL27C)
AT4G11420

Predicted

Affinity Capture-MS

FSW = 0.0609

Unknown

EIF3A (EUKARYOTIC TRANSLATION INITIATION FACTOR 3A) TRANSLATION INITIATION FACTOR
AT3G11400

Predicted

Affinity Capture-MS

FSW = 0.1011

Unknown

EUKARYOTIC TRANSLATION INITIATION FACTOR 3G / EIF3G
AT3G52400

Predicted

co-fractionation

Co-fractionation

FSW = 0.1225

Unknown

SYP122 (SYNTAXIN OF PLANTS 122) SNAP RECEPTOR
AT5G43900

Predicted

biochemical

FSW = 0.0170

Unknown

MYA2 (ARABIDOPSIS MYOSIN 2) GTP-DEPENDENT PROTEIN BINDING / RAB GTPASE BINDING / MOTOR
AT1G04290

Predicted

two hybrid

FSW = 0.0264

Unknown

THIOESTERASE FAMILY PROTEIN
AT1G77840

Predicted

Affinity Capture-MS

FSW = 0.1570

Unknown

EUKARYOTIC TRANSLATION INITIATION FACTOR 5 PUTATIVE / EIF-5 PUTATIVE
AT2G30260

Predicted

biochemical

FSW = 0.0024

Unknown

U2B (U2 SMALL NUCLEAR RIBONUCLEOPROTEIN B) RNA BINDING / NUCLEIC ACID BINDING / NUCLEOTIDE BINDING
AT5G57015

Predicted

Affinity Capture-MS

FSW = 0.0544

Unknown

CKL12 (CASEIN KINASE I-LIKE 12) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
AT4G19610Predicted

two hybrid

FSW = 0.0679

Unknown

RNA BINDING / NUCLEIC ACID BINDING / NUCLEOTIDE BINDING
AT4G17390

Predicted

Affinity Capture-MS

FSW = 0.2881

Unknown

60S RIBOSOMAL PROTEIN L15 (RPL15B)
AT5G58420

Predicted

Affinity Capture-MS

FSW = 0.3613

Unknown

40S RIBOSOMAL PROTEIN S4 (RPS4D)
AT1G75560

Predicted

biochemical

FSW = 0.0122

Unknown

ZINC KNUCKLE (CCHC-TYPE) FAMILY PROTEIN
AT4G25630

Predicted

Affinity Capture-MS

FSW = 0.1747

Unknown

FIB2 (FIBRILLARIN 2) SNORNA BINDING
AT1G63810

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.1712

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 21 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S NRAP PROTEIN (INTERPROIPR005554) HAS 268 BLAST HITS TO 263 PROTEINS IN 124 SPECIES ARCHAE - 3 BACTERIA - 0 METAZOA - 116 FUNGI - 89 PLANTS - 17 VIRUSES - 0 OTHER EUKARYOTES - 43 (SOURCE NCBI BLINK)
AT3G56990

Predicted

Affinity Capture-MS

FSW = 0.1011

Unknown

EDA7 (EMBRYO SAC DEVELOPMENT ARREST 7)
AT3G62310

Predicted

Affinity Capture-MS

FSW = 0.0893

Unknown

RNA HELICASE PUTATIVE
AT4G14300

Predicted

Affinity Capture-MS

FSW = 0.0374

Unknown

HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / HNRNP PUTATIVE
AT4G12590

Predicted

biochemical

FSW = 0.0171

Unknown

UNKNOWN PROTEIN
AT2G41380

Predicted

Synthetic Lethality

Synthetic Lethality

FSW = 0.0139

Unknown

EMBRYO-ABUNDANT PROTEIN-RELATED
AT3G04800

Predicted

biochemical

FSW = 0.0171

Unknown

ATTIM23-3 P-P-BOND-HYDROLYSIS-DRIVEN PROTEIN TRANSMEMBRANE TRANSPORTER/ PROTEIN TRANSPORTER
AT4G25780

Predicted

two hybrid

Reconstituted Complex

two hybrid

two hybrid

Affinity Capture-Western

Reconstituted Complex

Affinity Capture-Western

two hybrid

FSW = 0.0108

Unknown

PATHOGENESIS-RELATED PROTEIN PUTATIVE
AT2G03120

Predicted

biochemical

FSW = 0.0272

Unknown

ATSPP (ARABIDOPSIS SIGNAL PEPTIDE PEPTIDASE) ASPARTIC-TYPE ENDOPEPTIDASE
AT5G22100

Predicted

Affinity Capture-MS

FSW = 0.0973

Unknown

RNA CYCLASE FAMILY PROTEIN
AT1G61580

Predicted

Affinity Capture-MS

FSW = 0.2590

Unknown

RPL3B (R-PROTEIN L3 B) STRUCTURAL CONSTITUENT OF RIBOSOME
AT4G17620

Predicted

Affinity Capture-MS

FSW = 0.1127

Unknown

GLYCINE-RICH PROTEIN
AT5G59240

Predicted

Affinity Capture-MS

FSW = 0.3846

Unknown

40S RIBOSOMAL PROTEIN S8 (RPS8B)
AT5G62160

Predicted

co-fractionation

Co-fractionation

FSW = 0.1327

Unknown

ATZIP12 (ZINC TRANSPORTER 12 PRECURSOR) CATION TRANSMEMBRANE TRANSPORTER/ METAL ION TRANSMEMBRANE TRANSPORTER
AT2G17800

Predicted

two hybrid

FSW = 0.0328

Unknown

ARAC1 GTP BINDING
AT1G10490

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.2537

Unknown

UNKNOWN PROTEIN
AT3G01160

Predicted

two hybrid

Affinity Capture-MS

FSW = 0.0952

Unknown

UNKNOWN PROTEIN
AT4G20325

Predicted

two hybrid

FSW = 0.0086

Unknown

UNKNOWN PROTEIN
AT4G34910

Predicted

Affinity Capture-MS

FSW = 0.0193

Unknown

DEAD/DEAH BOX HELICASE PUTATIVE (RH16)
AT1G10210

Predicted

biochemical

FSW = 0.0159

Unknown

ATMPK1 (MITOGEN-ACTIVATED PROTEIN KINASE 1) MAP KINASE/ KINASE
AT1G15240

Predicted

biochemical

FSW = 0.0346

Unknown

PHOX (PX) DOMAIN-CONTAINING PROTEIN
AT1G16350

Predicted

Affinity Capture-MS

FSW = 0.0802

Unknown

INOSINE-5-MONOPHOSPHATE DEHYDROGENASE PUTATIVE
AT1G34340

Predicted

biochemical

FSW = 0.0185

Unknown

ESTERASE/LIPASE/THIOESTERASE FAMILY PROTEIN
AT3G18740

Predicted

Affinity Capture-MS

FSW = 0.2492

Unknown

60S RIBOSOMAL PROTEIN L30 (RPL30C)
AT3G24080

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.1749

Unknown

KRR1 FAMILY PROTEIN
AT3G56150

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0871

Unknown

EIF3C (EUKARYOTIC TRANSLATION INITIATION FACTOR 3C) TRANSLATION INITIATION FACTOR
AT4G09310

Predicted

Affinity Capture-MS

FSW = 0.0264

Unknown

SPLA/RYANODINE RECEPTOR (SPRY) DOMAIN-CONTAINING PROTEIN
AT1G04170

Predicted

Affinity Capture-MS

FSW = 0.0558

Unknown

EIF2 GAMMA TRANSLATION FACTOR NUCLEIC ACID BINDING / TRANSLATION INITIATION FACTOR
AT1G10090

Predicted

synthetic growth defect

FSW = 0.0077

Unknown

UNKNOWN PROTEIN
AT1G15440

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.1127

Unknown

TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT1G16280

Predicted

Affinity Capture-MS

FSW = 0.0587

Unknown

DEAD/DEAH BOX HELICASE PUTATIVE
AT1G17760

Predicted

Affinity Capture-MS

FSW = 0.0242

Unknown

CSTF77 PROTEIN BINDING
AT1G25155Predicted

synthetic growth defect

FSW = 0.0320

Unknown

ANTHRANILATE SYNTHASE BETA SUBUNIT PUTATIVE
AT1G31660

Predicted

Affinity Capture-MS

FSW = 0.2742

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 21 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S BYSTIN (INTERPROIPR007955) HAS 370 BLAST HITS TO 362 PROTEINS IN 156 SPECIES ARCHAE - 0 BACTERIA - 7 METAZOA - 139 FUNGI - 93 PLANTS - 32 VIRUSES - 0 OTHER EUKARYOTES - 99 (SOURCE NCBI BLINK)
AT1G42440

Predicted

Affinity Capture-MS

FSW = 0.1976

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN RIBOSOME BIOGENESIS LOCATED IN NUCLEUS EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S AARP2CN (INTERPROIPR012948) PROTEIN OF UNKNOWN FUNCTION DUF663 (INTERPROIPR007034) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G067201) HAS 2447 BLAST HITS TO 1812 PROTEINS IN 205 SPECIES ARCHAE - 0 BACTERIA - 115 METAZOA - 903 FUNGI - 423 PLANTS - 100 VIRUSES - 53 OTHER EUKARYOTES - 853 (SOURCE NCBI BLINK)
AT1G69070

Predicted

Affinity Capture-MS

FSW = 0.1815

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 23 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S NOP14-LIKE PROTEIN (INTERPROIPR007276) HAS 64668 BLAST HITS TO 30830 PROTEINS IN 1152 SPECIES ARCHAE - 207 BACTERIA - 18692 METAZOA - 20758 FUNGI - 6782 PLANTS - 2177 VIRUSES - 523 OTHER EUKARYOTES - 15529 (SOURCE NCBI BLINK)
AT3G11450

Predicted

Affinity Capture-MS

FSW = 0.0529

Unknown

DNAJ HEAT SHOCK N-TERMINAL DOMAIN-CONTAINING PROTEIN / CELL DIVISION PROTEIN-RELATED
AT3G51270

Predicted

Affinity Capture-MS

FSW = 0.1799

Unknown

ATP BINDING / CATALYTIC/ PROTEIN SERINE/THREONINE KINASE
AT4G04885

Predicted

Affinity Capture-MS

FSW = 0.0098

Unknown

PCFS4 (PCF11P-SIMILAR PROTEIN 4) ZINC ION BINDING
AT4G27640

Predicted

Affinity Capture-MS

FSW = 0.0356

Unknown

IMPORTIN BETA-2 SUBUNIT FAMILY PROTEIN
AT4G32930

Predicted

Affinity Capture-MS

FSW = 0.0143

Unknown

UNKNOWN PROTEIN
AT5G08420

Predicted

Affinity Capture-MS

FSW = 0.2312

Unknown

RNA BINDING
AT5G10930

Predicted

Affinity Capture-Western

Affinity Capture-MS

FSW = 0.1190

Unknown

CIPK5 (CBL-INTERACTING PROTEIN KINASE 5) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
AT5G41190

Predicted

Affinity Capture-MS

FSW = 0.0553

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 21 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S NIN ONE BINDING (NOB1) ZN-RIBBON LIKE (INTERPROIPR014881) D-SITE 20S PRE-RRNA NUCLEASE (INTERPROIPR017117) HAS 855 BLAST HITS TO 653 PROTEINS IN 196 SPECIES ARCHAE - 53 BACTERIA - 16 METAZOA - 335 FUNGI - 168 PLANTS - 29 VIRUSES - 10 OTHER EUKARYOTES - 244 (SOURCE NCBI BLINK)
AT5G46190

Predicted

Affinity Capture-MS

FSW = 0.0561

Unknown

KH DOMAIN-CONTAINING PROTEIN
AT5G41700

Predicted

biochemical

FSW = 0.0066

Unknown

UBC8 (UBIQUITIN CONJUGATING ENZYME 8) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE
AT5G65900

Predicted

Affinity Capture-MS

FSW = 0.1977

Unknown

DEAD/DEAH BOX HELICASE PUTATIVE
AT5G55190

Predicted

two hybrid

Co-expression

FSW = 0.0156

Unknown

RAN3 (RAN GTPASE 3) GTP BINDING / GTPASE/ PROTEIN BINDING

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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454