Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Welcome to AtPIN
AtPIN will be upgraded. Please send your suggestions here
AT2G30260 - ( U2B (U2 small nuclear ribonucleoprotein B) RNA binding / nucleic acid binding / nucleotide binding )
60 Proteins interacs with AT2G30260| Locus | Method | FSW  | Cellular Compartment Classification (C3) | Description |
|---|---|---|---|---|
AT1G09760
   | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSReconstituted Complextwo hybrid | FSW = 0.1358
| Class C:nucleuscytosol | U2A (U2 SMALL NUCLEAR RIBONUCLEOPROTEIN A) PROTEIN BINDING |
| AT5G41370
| Predictedtwo hybrid | FSW = 0.0128
| Class C:nucleuscytosol | XPB1 (ARABIDOPSIS HOMOLOG OF XERODERMA PIGMENTOSUM COMPLEMENTATION GROUP B 1) ATP BINDING / ATP-DEPENDENT DNA HELICASE/ ATP-DEPENDENT HELICASE/ DNA BINDING / HELICASE/ HYDROLASE/ NUCLEIC ACID BINDING |
| AT1G09770
| PredictedAffinity Capture-MS | FSW = 0.0928
| Class C:nucleus | ATCDC5 (ARABIDOPSIS THALIANA CELL DIVISION CYCLE 5) DNA BINDING / TRANSCRIPTION FACTOR |
| AT5G64270
| PredictedAffinity Capture-MS | FSW = 0.0831
| Class C:nucleus | SPLICING FACTOR PUTATIVE |
| AT3G47370
| PredictedAffinity Capture-MS | FSW = 0.0068
| Class C:nucleus | 40S RIBOSOMAL PROTEIN S20 (RPS20B) |
| AT2G47580
| PredictedGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.0895
| Class C:nucleus | U1A (SPLICEOSOMAL PROTEIN U1A) RNA BINDING / NUCLEIC ACID BINDING / NUCLEOTIDE BINDING |
| AT1G06960
| PredictedPhylogenetic profile methodCo-expression | FSW = 0.1881
| Class C:nucleus | SMALL NUCLEAR RIBONUCLEOPROTEIN U2B PUTATIVE / SPLICEOSOMAL PROTEIN PUTATIVE |
| AT1G05120
| Predictedtwo hybrid | FSW = 0.0197
| Class C:nucleus | SNF2 DOMAIN-CONTAINING PROTEIN / HELICASE DOMAIN-CONTAINING PROTEIN / RING FINGER DOMAIN-CONTAINING PROTEIN |
| AT5G53180
| Predictedtwo hybrid | FSW = 0.0134
| Class C:nucleus | PTB2 (POLYPYRIMIDINE TRACT-BINDING PROTEIN 2) RNA BINDING / NUCLEIC ACID BINDING / NUCLEOTIDE BINDING |
| AT4G26600
| PredictedAffinity Capture-MS | FSW = 0.0157
| Class C:nucleus | NUCLEOLAR PROTEIN PUTATIVE |
| AT4G13980
| Predictedbiochemical | FSW = 0.0083
| Class C:nucleus | AT-HSFA5 DNA BINDING / TRANSCRIPTION FACTOR |
| AT3G44530
| PredictedPhenotypic Enhancement | FSW = 0.0133
| Class C:nucleus | HIRA (ARABIDOPSIS HOMOLOG OF HISTONE CHAPERONE HIRA) NUCLEOTIDE BINDING / PROTEIN BINDING |
| AT5G58850
| Predictedtwo hybrid | FSW = 0.0155
| Class C:nucleus | MYB119 (MYB DOMAIN PROTEIN 119) DNA BINDING / TRANSCRIPTION FACTOR |
| AT4G30220
| PredictedAffinity Capture-MS | FSW = 0.0974
| Class C:nucleus | RUXF (SMALL NUCLEAR RIBONUCLEOPROTEIN F) |
| AT2G44950
| Predictedsynthetic growth defect | FSW = 0.0351
| Class C:cytosol | HUB1 (HISTONE MONO-UBIQUITINATION 1) PROTEIN BINDING / PROTEIN HOMODIMERIZATION/ UBIQUITIN-PROTEIN LIGASE/ ZINC ION BINDING |
| AT5G63400
| Predictedbiochemical | FSW = 0.0021
| Unknown | ADK1 (ADENYLATE KINASE 1) ATP BINDING / ADENYLATE KINASE/ NUCLEOBASE NUCLEOSIDE NUCLEOTIDE KINASE/ NUCLEOTIDE KINASE/ PHOSPHOTRANSFERASE PHOSPHATE GROUP AS ACCEPTOR |
| AT3G26590
| Predictedbiochemical | FSW = 0.0061
| Unknown | MATE EFFLUX FAMILY PROTEIN |
| AT5G13610
| Predictedtwo hybrid | FSW = 0.0157
| Unknown | UNKNOWN PROTEIN |
| AT2G33340
| PredictedAffinity Capture-MSCo-purification | FSW = 0.0430
| Unknown | NUCLEOTIDE BINDING / UBIQUITIN-PROTEIN LIGASE |
| AT2G35040
| PredictedAffinity Capture-MS | FSW = 0.0296
| Unknown | AICARFT/IMPCHASE BIENZYME FAMILY PROTEIN |
| AT3G11630
| Predictedsynthetic growth defect | FSW = 0.0415
| Unknown | 2-CYS PEROXIREDOXIN CHLOROPLAST (BAS1) |
| AT3G61430
| PredictedAffinity Capture-MS | FSW = 0.0399
| Unknown | PIP1A (PLASMA MEMBRANE INTRINSIC PROTEIN 1A) WATER CHANNEL |
| AT1G58180
| Predictedtwo hybrid | FSW = 0.0563
| Unknown | CARBONIC ANHYDRASE FAMILY PROTEIN / CARBONATE DEHYDRATASE FAMILY PROTEIN |
| AT1G79230
| Predictedtwo hybrid | FSW = 0.0282
| Unknown | MST1 (MERCAPTOPYRUVATE SULFURTRANSFERASE 1) 3-MERCAPTOPYRUVATE SULFURTRANSFERASE/ SULFURTRANSFERASE/ THIOSULFATE SULFURTRANSFERASE |
| AT4G31180
| PredictedPhenotypic Enhancement | FSW = 0.0102
| Unknown | ASPARTYL-TRNA SYNTHETASE PUTATIVE / ASPARTATE--TRNA LIGASE PUTATIVE |
| AT4G33730
| Predictedbiochemical | FSW = 0.0063
| Unknown | PATHOGENESIS-RELATED PROTEIN PUTATIVE |
| AT4G15900
| PredictedAffinity Capture-MS | FSW = 0.0658
| Unknown | PRL1 (PLEIOTROPIC REGULATORY LOCUS 1) BASAL TRANSCRIPTION REPRESSOR/ NUCLEOTIDE BINDING / PROTEIN BINDING |
| AT4G00650
| Predictedin vitro | FSW = 0.0164
| Unknown | FRI (FRIGIDA) PROTEIN HETERODIMERIZATION/ PROTEIN HOMODIMERIZATION |
| AT5G40820
| Predictedtwo hybrid | FSW = 0.0178
| Unknown | ATRAD3 BINDING / INOSITOL OR PHOSPHATIDYLINOSITOL KINASE/ PHOSPHOTRANSFERASE ALCOHOL GROUP AS ACCEPTOR / PROTEIN SERINE/THREONINE KINASE |
| AT4G30800
| Predictedbiochemical | FSW = 0.0024
| Unknown | 40S RIBOSOMAL PROTEIN S11 (RPS11B) |
| AT2G31580
| Predictedtwo hybrid | FSW = 0.0345
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN CULTURED CELL CONTAINS INTERPRO DOMAIN/S TRNAHIS GUANYLYLTRANSFERASE (INTERPROIPR007537) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT2G323201) HAS 640 BLAST HITS TO 336 PROTEINS IN 155 SPECIES ARCHAE - 65 BACTERIA - 47 METAZOA - 212 FUNGI - 176 PLANTS - 43 VIRUSES - 2 OTHER EUKARYOTES - 95 (SOURCE NCBI BLINK) |
| AT3G04600
| PredictedPhenotypic Enhancement | FSW = 0.0544
| Unknown | TRNA SYNTHETASE CLASS I (W AND Y) FAMILY PROTEIN |
| AT5G06160
| PredictedPhenotypic EnhancementPhenotypic SuppressionAffinity Capture-MS | FSW = 0.0830
| Unknown | ATO (ATROPOS) NUCLEIC ACID BINDING / ZINC ION BINDING |
| AT2G43770
| PredictedAffinity Capture-MS | FSW = 0.0421
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
| AT4G32850
| PredictedAffinity Capture-MS | FSW = 0.0125
| Unknown | NPAP (NUCLEAR POLY(A) POLYMERASE) NUCLEOTIDYLTRANSFERASE/ PROTEIN BINDING |
| AT1G12130
| PredictedSynthetic Lethality | FSW = 0.0214
| Unknown | FLAVIN-CONTAINING MONOOXYGENASE FAMILY PROTEIN / FMO FAMILY PROTEIN |
| AT1G54560 | Predictedbiochemical | FSW = 0.0125
| Unknown | XIE MOTOR/ PROTEIN BINDING |
| AT1G70290
| Predictedbiochemical | FSW = 0.0143
| Unknown | ATTPS8 ALPHAALPHA-TREHALOSE-PHOSPHATE SYNTHASE (UDP-FORMING)/ TRANSFERASE TRANSFERRING GLYCOSYL GROUPS / TREHALOSE-PHOSPHATASE |
| AT1G80410
| Predictedsynthetic growth defect | FSW = 0.0272
| Unknown | EMB2753 (EMBRYO DEFECTIVE 2753) BINDING |
| AT2G02760
| Predictedsynthetic growth defect | FSW = 0.0350
| Unknown | ATUBC2 (UBIQUITING-CONJUGATING ENZYME 2) UBIQUITIN-PROTEIN LIGASE |
| AT2G16740
| PredictedSynthetic Lethality | FSW = 0.0207
| Unknown | UBC29 (UBIQUITIN-CONJUGATING ENZYME 29) UBIQUITIN-PROTEIN LIGASE |
| AT2G39260
| PredictedAffinity Capture-MS | FSW = 0.0165
| Unknown | RNA BINDING / BINDING / PROTEIN BINDING |
| AT3G19940
| PredictedAffinity Capture-MS | FSW = 0.0168
| Unknown | SUGAR TRANSPORTER PUTATIVE |
| AT3G57140
| PredictedAffinity Capture-MSbiochemical | FSW = 0.0588
| Unknown | PATATIN-RELATED |
| AT3G58560
| PredictedSynthetic Lethality | FSW = 0.0530
| Unknown | ENDONUCLEASE/EXONUCLEASE/PHOSPHATASE FAMILY PROTEIN |
| AT4G14240
| Predictedbiochemical | FSW = 0.0068
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 23 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S PROTEIN OF UNKNOWN FUNCTION DUF21 (INTERPROIPR002550) CYSTATHIONINE BETA-SYNTHASE CORE (INTERPROIPR000644) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS CBS DOMAIN-CONTAINING PROTEIN-RELATED (TAIRAT4G142301) HAS 6770 BLAST HITS TO 6657 PROTEINS IN 1347 SPECIES ARCHAE - 62 BACTERIA - 4461 METAZOA - 254 FUNGI - 179 PLANTS - 121 VIRUSES - 0 OTHER EUKARYOTES - 1693 (SOURCE NCBI BLINK) |
| AT4G25950
| Predictedbiochemical | FSW = 0.0037
| Unknown | VATG3 (VACUOLAR ATP SYNTHASE G3) HYDROLASE ACTING ON ACID ANHYDRIDES CATALYZING TRANSMEMBRANE MOVEMENT OF SUBSTANCES |
| AT4G27180
| PredictedPhenotypic Enhancement | FSW = 0.0418
| Unknown | ATK2 (ARABIDOPSIS THALIANA KINESIN 2) MICROTUBULE BINDING / MICROTUBULE MOTOR |
| AT4G29910
| PredictedAffinity Capture-MS | FSW = 0.0406
| Unknown | ORC5 (ORIGIN RECOGNITION COMPLEX PROTEIN 5) PROTEIN BINDING |
| AT4G39050
| Predictedinterologs mapping | FSW = 0.0256
| Unknown | KINESIN-RELATED PROTEIN (MKRP2) |
| AT5G10960
| PredictedSynthetic Lethality | FSW = 0.0512
| Unknown | CCR4-NOT TRANSCRIPTION COMPLEX PROTEIN PUTATIVE |
| AT5G13780
| Predictedsynthetic growth defect | FSW = 0.0483
| Unknown | GCN5-RELATED N-ACETYLTRANSFERASE PUTATIVE |
| AT5G24840
| PredictedSynthetic Lethality | FSW = 0.0022
| Unknown | TRNA (GUANINE-N7-)-METHYLTRANSFERASE |
| AT5G44740
| Predictedbiochemical | FSW = 0.0099
| Unknown | POLH (Y-FAMILT DNA POLYMERASE H) DNA-DIRECTED DNA POLYMERASE |
| AT5G58380
| PredictedAffinity Capture-MS | FSW = 0.0245
| Unknown | SIP1 (SOS3-INTERACTING PROTEIN 1) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
| AT3G55220
| PredictedAffinity Capture-MS | FSW = 0.0894
| Unknown | SPLICING FACTOR PUTATIVE |
| AT4G21660
| PredictedAffinity Capture-MS | FSW = 0.1050
| Unknown | PROLINE-RICH SPLICEOSOME-ASSOCIATED (PSP) FAMILY PROTEIN |
| AT4G25120 | Predictedtwo hybrid | FSW = 0.0411
| Unknown | ATP BINDING / ATP-DEPENDENT DNA HELICASE/ DNA BINDING / HYDROLASE |
| AT4G36080 | Predictedtwo hybrid | FSW = 0.0073
| Unknown | FAT DOMAIN-CONTAINING PROTEIN / PHOSPHATIDYLINOSITOL 3- AND 4-KINASE FAMILY PROTEIN |
| AT5G16640
| Predictedtwo hybrid | FSW = 0.0379
| Unknown | PENTATRICOPEPTIDE (PPR) REPEAT-CONTAINING PROTEIN |
Downloads
Quick help
Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
AtPIN is built and maintained by the System and Integrative Biology Laboratory of CBMEG / UNICAMPTAIR | Report a bug | Roadmap | This is AtPIN version 2.6.71
This page takes 0.907 seconds to be build.
This page takes 0.907 seconds to be build.