Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G09760 - ( U2A (U2 small nuclear ribonucleoprotein A) protein binding )
62 Proteins interacs with AT1G09760| Locus | Method | FSW  | Cellular Compartment Classification (C3) | Description |
|---|---|---|---|---|
AT1G09770
   | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.4281
| Class C:plastidnucleus | ATCDC5 (ARABIDOPSIS THALIANA CELL DIVISION CYCLE 5) DNA BINDING / TRANSCRIPTION FACTOR |
| AT5G64270
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.4074
| Class C:plastidnucleus | SPLICING FACTOR PUTATIVE |
| AT1G80070
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.4468
| Class C:plastid | SUS2 (ABNORMAL SUSPENSOR 2) |
| AT3G55200 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3301
| Class C:plastid | SPLICING FACTOR PUTATIVE |
| AT4G04350
| Predictedinteraction prediction | FSW = 0.0103
| Class C:plastid | EMB2369 (EMBRYO DEFECTIVE 2369) ATP BINDING / AMINOACYL-TRNA LIGASE/ LEUCINE-TRNA LIGASE/ NUCLEOTIDE BINDING |
| AT1G17745
| Predictedinteraction predictiontwo hybrid | FSW = 0.0047
| Class C:plastid | PGDH (3-PHOSPHOGLYCERATE DEHYDROGENASE) PHOSPHOGLYCERATE DEHYDROGENASE |
| AT2G33340
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSCo-purification | FSW = 0.3597
| Class C:plastid | NUCLEOTIDE BINDING / UBIQUITIN-PROTEIN LIGASE |
| AT3G18790
| Predictedtwo hybridAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.2060
| Class C:plastid | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CHLOROPLAST EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S ISY1-LIKE SPLICING (INTERPROIPR009360) HAS 1075 BLAST HITS TO 879 PROTEINS IN 176 SPECIES ARCHAE - 8 BACTERIA - 11 METAZOA - 379 FUNGI - 177 PLANTS - 27 VIRUSES - 9 OTHER EUKARYOTES - 464 (SOURCE NCBI BLINK) |
| AT2G30260
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSReconstituted Complextwo hybrid | FSW = 0.1358
| Class C:nucleuscytosol | U2B (U2 SMALL NUCLEAR RIBONUCLEOPROTEIN B) RNA BINDING / NUCLEIC ACID BINDING / NUCLEOTIDE BINDING |
| AT5G08290
| PredictedAffinity Capture-MS | FSW = 0.4489
| Class C:nucleuscytosol | YLS8 CATALYTIC |
| AT3G07590
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.3333
| Class C:nucleus | SMALL NUCLEAR RIBONUCLEOPROTEIN D1 PUTATIVE / SNRNP CORE PROTEIN D1 PUTATIVE / SM PROTEIN D1 PUTATIVE |
| AT4G02840
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.4765
| Class C:nucleus | SMALL NUCLEAR RIBONUCLEOPROTEIN D1 PUTATIVE / SNRNP CORE PROTEIN D1 PUTATIVE / SM PROTEIN D1 PUTATIVE |
| AT1G20960
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.4762
| Class C:nucleus | EMB1507 (EMBRYO DEFECTIVE 1507) ATP BINDING / ATP-DEPENDENT HELICASE/ HELICASE/ NUCLEIC ACID BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING |
| AT1G55310
| PredictedShared biological functionEnriched domain pairCo-expression | FSW = 0.0668
| Class C:nucleus | SR33 RNA BINDING / PROTEIN BINDING |
| AT2G18510
| PredictedAffinity Capture-MS | FSW = 0.1239
| Class C:nucleus | EMB2444 (EMBRYO DEFECTIVE 2444) RNA BINDING / NUCLEIC ACID BINDING / NUCLEOTIDE BINDING |
| AT1G16610
| PredictedShared biological functionEnriched domain pairCo-expression | FSW = 0.0789
| Class C:nucleus | SR45 RNA BINDING / PROTEIN BINDING |
| AT2G47640
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.3505
| Class C:nucleus | SMALL NUCLEAR RIBONUCLEOPROTEIN D2 PUTATIVE / SNRNP CORE PROTEIN D2 PUTATIVE / SM PROTEIN D2 PUTATIVE |
| AT3G19840
| PredictedAffinity Capture-MS | FSW = 0.2921
| Class C:nucleus | FF DOMAIN-CONTAINING PROTEIN / WW DOMAIN-CONTAINING PROTEIN |
| AT3G50670
| PredictedAffinity Capture-MSShared biological functionEnriched domain pairCo-expression | FSW = 0.1400
| Class C:nucleus | U1-70K (U1 SMALL NUCLEAR RIBONUCLEOPROTEIN-70K) RNA BINDING / NUCLEIC ACID BINDING / NUCLEOTIDE BINDING |
| AT2G41500
| PredictedAffinity Capture-MS | FSW = 0.3232
| Class C:nucleus | EMB2776 NUCLEOTIDE BINDING |
| AT2G43810
| PredictedAffinity Capture-MS | FSW = 0.1115
| Class C:nucleus | SMALL NUCLEAR RIBONUCLEOPROTEIN F PUTATIVE / U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN PUTATIVE / SM PROTEIN F PUTATIVE |
| AT4G30220
| PredictedAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.5182
| Class C:nucleus | RUXF (SMALL NUCLEAR RIBONUCLEOPROTEIN F) |
| AT2G23930
| PredictedAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.5599
| Class C:nucleus | SNRNP-G (PROBABLE SMALL NUCLEAR RIBONUCLEOPROTEIN G) |
| AT3G11500
| Predictedinteraction predictionCo-expression | FSW = 0.4824
| Class C:nucleus | SMALL NUCLEAR RIBONUCLEOPROTEIN G PUTATIVE / SNRNP-G PUTATIVE / SM PROTEIN G PUTATIVE |
| AT1G20580
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.6084
| Class C:nucleus | SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE |
| AT1G06960
| Predictedin vitroAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinterologs mappingReconstituted Complextwo hybridinteraction predictionEnriched domain pairCo-expression | FSW = 0.0579
| Class C:nucleus | SMALL NUCLEAR RIBONUCLEOPROTEIN U2B PUTATIVE / SPLICEOSOMAL PROTEIN PUTATIVE |
| AT3G61860
| PredictedShared biological functionEnriched domain pairCo-expression | FSW = 0.0562
| Class C:nucleus | RSP31 RNA BINDING / NUCLEIC ACID BINDING / NUCLEOTIDE BINDING |
| AT3G62310
| PredictedAffinity Capture-MS | FSW = 0.0870
| Class C:nucleus | RNA HELICASE PUTATIVE |
| AT1G04510
| PredictedAffinity Capture-MSAffinity Capture-MSCo-purificationCo-expression | FSW = 0.3695
| Class C:nucleus | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
| AT4G30330
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.3895
| Class C:nucleus | SMALL NUCLEAR RIBONUCLEOPROTEIN E PUTATIVE / SNRNP-E PUTATIVE / SM PROTEIN E PUTATIVE |
| AT2G18740
| PredictedAffinity Capture-MSCo-expression | FSW = 0.3828
| Class C:nucleus | SMALL NUCLEAR RIBONUCLEOPROTEIN E PUTATIVE / SNRNP-E PUTATIVE / SM PROTEIN E PUTATIVE |
| AT2G44950
| Predictedsynthetic growth defect | FSW = 0.0162
| Class C:cytosol | HUB1 (HISTONE MONO-UBIQUITINATION 1) PROTEIN BINDING / PROTEIN HOMODIMERIZATION/ UBIQUITIN-PROTEIN LIGASE/ ZINC ION BINDING |
| AT3G55410
| PredictedAffinity Capture-MS | FSW = 0.0248
| Unknown | 2-OXOGLUTARATE DEHYDROGENASE E1 COMPONENT PUTATIVE / OXOGLUTARATE DECARBOXYLASE PUTATIVE / ALPHA-KETOGLUTARIC DEHYDROGENASE PUTATIVE |
| AT5G65750
| PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0182
| Unknown | 2-OXOGLUTARATE DEHYDROGENASE E1 COMPONENT PUTATIVE / OXOGLUTARATE DECARBOXYLASE PUTATIVE / ALPHA-KETOGLUTARIC DEHYDROGENASE PUTATIVE |
| AT5G57625
| PredictedAffinity Capture-MS | FSW = 0.0044
| Unknown | ALLERGEN V5/TPX-1-RELATED FAMILY PROTEIN |
| AT1G67490
| PredictedSynthetic Lethalityinteraction prediction | FSW = 0.0273
| Unknown | GCS1 (GLUCOSIDASE 1) ALPHA-GLUCOSIDASE |
| AT2G03120
| PredictedAffinity Capture-MS | FSW = 0.0203
| Unknown | ATSPP (ARABIDOPSIS SIGNAL PEPTIDE PEPTIDASE) ASPARTIC-TYPE ENDOPEPTIDASE |
| AT4G15900
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2400
| Unknown | PRL1 (PLEIOTROPIC REGULATORY LOCUS 1) BASAL TRANSCRIPTION REPRESSOR/ NUCLEOTIDE BINDING / PROTEIN BINDING |
| AT1G14640
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.4854
| Unknown | SWAP (SUPPRESSOR-OF-WHITE-APRICOT)/SURP DOMAIN-CONTAINING PROTEIN |
| AT1G17070
| PredictedAffinity Capture-MS | FSW = 0.3734
| Unknown | D111/G-PATCH DOMAIN-CONTAINING PROTEIN |
| AT1G17130
| PredictedAffinity Capture-MSinteraction prediction | FSW = 0.1482
| Unknown | CELL CYCLE CONTROL PROTEIN-RELATED |
| AT1G60170
| PredictedAffinity Capture-MS | FSW = 0.4500
| Unknown | EMB1220 (EMBRYO DEFECTIVE 1220) |
| AT1G80410
| Predictedsynthetic growth defect | FSW = 0.0213
| Unknown | EMB2753 (EMBRYO DEFECTIVE 2753) BINDING |
| AT2G22530
| PredictedSynthetic Lethality | FSW = 0.0180
| Unknown | CATALYTIC/ TRANSFERASE |
| AT2G32600
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3230
| Unknown | HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY PROTEIN |
| AT3G05760
| PredictedAffinity Capture-MS | FSW = 0.1761
| Unknown | NUCLEIC ACID BINDING / ZINC ION BINDING |
| AT3G55220
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.5682
| Unknown | SPLICING FACTOR PUTATIVE |
| AT4G03430
| PredictedAffinity Capture-MS | FSW = 0.2911
| Unknown | EMB2770 (EMBRYO DEFECTIVE 2770) RNA SPLICING FACTOR TRANSESTERIFICATION MECHANISM |
| AT4G21660
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.5276
| Unknown | PROLINE-RICH SPLICEOSOME-ASSOCIATED (PSP) FAMILY PROTEIN |
| AT5G06160
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.5118
| Unknown | ATO (ATROPOS) NUCLEIC ACID BINDING / ZINC ION BINDING |
| AT5G13780
| Predictedsynthetic growth defect | FSW = 0.0243
| Unknown | GCN5-RELATED N-ACETYLTRANSFERASE PUTATIVE |
| AT5G28740
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.3137
| Unknown | TRANSCRIPTION-COUPLED DNA REPAIR PROTEIN-RELATED |
| AT5G41770
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3057
| Unknown | CROOKED NECK PROTEIN PUTATIVE / CELL CYCLE PROTEIN PUTATIVE |
| AT5G46400
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.4773
| Unknown | PRP39-2 |
| AT2G37540
| PredictedAffinity Capture-MS | FSW = 0.0042
| Unknown | SHORT-CHAIN DEHYDROGENASE/REDUCTASE (SDR) FAMILY PROTEIN |
| AT3G03340
| PredictedAffinity Capture-MS | FSW = 0.2877
| Unknown | UNE6 (UNFERTILIZED EMBRYO SAC 6) |
| AT3G05960
| PredictedAffinity Capture-MS | FSW = 0.0040
| Unknown | STP6 (SUGAR TRANSPORTER 6) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ MONOSACCHARIDE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER |
| AT3G17660
| PredictedAffinity Capture-RNA | FSW = 0.1043
| Unknown | AGD15 (ARF-GAP DOMAIN 15) ARF GTPASE ACTIVATOR/ DNA BINDING / ZINC ION BINDING |
| AT5G11920
| PredictedAffinity Capture-Western | FSW = 0.0123
| Unknown | ATCWINV6 (6-&1-FRUCTAN EXOHYDROLASE) HYDROLASE HYDROLYZING O-GLYCOSYL COMPOUNDS / INULINASE/ LEVANASE |
| AT3G16650
| PredictedAffinity Capture-MS | FSW = 0.2491
| Unknown | PP1/PP2A PHOSPHATASES PLEIOTROPIC REGULATOR 2 (PRL2) |
| AT1G55255 | Predictedsynthetic growth defect | FSW = 0.0197
| Unknown | PP1/PP2A PHOSPHATASES PLEIOTROPIC REGULATOR 2 (PRL2) |
| AT1G24320
| PredictedSynthetic Lethality | FSW = 0.0202
| Unknown | ALPHA-GLUCOSIDASE PUTATIVE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
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