Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G11500 - ( small nuclear ribonucleoprotein G putative / snRNP-G putative / Sm protein G putative )
27 Proteins interacs with AT3G11500| Locus | Method | FSW  | Cellular Compartment Classification (C3) | Description |
|---|---|---|---|---|
AT4G02840
   | Predictedinteraction predictionCo-expression | FSW = 0.6146
| Class C:nucleus | SMALL NUCLEAR RIBONUCLEOPROTEIN D1 PUTATIVE / SNRNP CORE PROTEIN D1 PUTATIVE / SM PROTEIN D1 PUTATIVE |
| AT1G09760
| Predictedinteraction predictionCo-expression | FSW = 0.4824
| Class C:nucleus | U2A (U2 SMALL NUCLEAR RIBONUCLEOPROTEIN A) PROTEIN BINDING |
| AT1G09770
| PredictedAffinity Capture-MS | FSW = 0.3096
| Class C:nucleus | ATCDC5 (ARABIDOPSIS THALIANA CELL DIVISION CYCLE 5) DNA BINDING / TRANSCRIPTION FACTOR |
| AT5G64270
| Predictedinteraction prediction | FSW = 0.3914
| Class C:nucleus | SPLICING FACTOR PUTATIVE |
| AT5G08290
| Predictedinteraction prediction | FSW = 0.5316
| Class C:nucleus | YLS8 CATALYTIC |
| AT5G27720
| Predictedinteraction prediction | FSW = 0.1998
| Class C:nucleus | EMB1644 (EMBRYO DEFECTIVE 1644) |
| AT2G23930
| PredictedPhylogenetic profile methodCo-expression | FSW = 0.7053
| Class C:nucleus | SNRNP-G (PROBABLE SMALL NUCLEAR RIBONUCLEOPROTEIN G) |
| AT3G50670
| PredictedCo-purificationinteraction prediction | FSW = 0.0886
| Class C:nucleus | U1-70K (U1 SMALL NUCLEAR RIBONUCLEOPROTEIN-70K) RNA BINDING / NUCLEIC ACID BINDING / NUCLEOTIDE BINDING |
| AT2G47640
| Predictedinteraction predictionCo-expression | FSW = 0.3319
| Class C:nucleus | SMALL NUCLEAR RIBONUCLEOPROTEIN D2 PUTATIVE / SNRNP CORE PROTEIN D2 PUTATIVE / SM PROTEIN D2 PUTATIVE |
| AT1G28060
| Predictedinteraction predictionCo-expression | FSW = 0.3425
| Class C:nucleus | SMALL NUCLEAR RIBONUCLEOPROTEIN FAMILY PROTEIN / SNRNP FAMILY PROTEIN |
| AT1G20580
| Predictedinteraction predictionCo-expression | FSW = 0.5823
| Class C:nucleus | SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE |
| AT2G41500
| Predictedinteraction predictionCo-expression | FSW = 0.3531
| Class C:nucleus | EMB2776 NUCLEOTIDE BINDING |
| AT4G30330
| Predictedtwo hybridin vitroAffinity Capture-MSin vitrotwo hybrid | FSW = 0.4877
| Class C:nucleus | SMALL NUCLEAR RIBONUCLEOPROTEIN E PUTATIVE / SNRNP-E PUTATIVE / SM PROTEIN E PUTATIVE |
| AT2G33340
| Predictedinteraction prediction | FSW = 0.3056
| Unknown | NUCLEOTIDE BINDING / UBIQUITIN-PROTEIN LIGASE |
| AT3G55200 | Predictedinteraction prediction | FSW = 0.3376
| Unknown | SPLICING FACTOR PUTATIVE |
| AT4G15900
| Predictedinteraction predictionCo-expression | FSW = 0.1530
| Unknown | PRL1 (PLEIOTROPIC REGULATORY LOCUS 1) BASAL TRANSCRIPTION REPRESSOR/ NUCLEOTIDE BINDING / PROTEIN BINDING |
| AT5G09390
| PredictedAffinity Capture-MS | FSW = 0.0147
| Unknown | CD2-BINDING PROTEIN-RELATED |
| AT4G03430
| PredictedAffinity Capture-MSinteraction prediction | FSW = 0.2903
| Unknown | EMB2770 (EMBRYO DEFECTIVE 2770) RNA SPLICING FACTOR TRANSESTERIFICATION MECHANISM |
| AT5G41770
| Predictedinteraction predictionCo-expression | FSW = 0.2450
| Unknown | CROOKED NECK PROTEIN PUTATIVE / CELL CYCLE PROTEIN PUTATIVE |
| AT5G06160
| Predictedinteraction predictionCo-expression | FSW = 0.4461
| Unknown | ATO (ATROPOS) NUCLEIC ACID BINDING / ZINC ION BINDING |
| AT4G21660
| Predictedinteraction prediction | FSW = 0.4865
| Unknown | PROLINE-RICH SPLICEOSOME-ASSOCIATED (PSP) FAMILY PROTEIN |
| AT3G19670 | Predictedinteraction prediction | FSW = 0.0444
| Unknown | PROTEIN BINDING |
| AT3G03340
| Predictedinteraction prediction | FSW = 0.2441
| Unknown | UNE6 (UNFERTILIZED EMBRYO SAC 6) |
| AT2G32600
| Predictedinteraction prediction | FSW = 0.3707
| Unknown | HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY PROTEIN |
| AT2G19560
| Predictedinteraction prediction | FSW = 0.0833
| Unknown | EER5 (ENHANCED ETHYLENE RESPONSE 5) |
| AT1G60170
| Predictedinteraction prediction | FSW = 0.4472
| Unknown | EMB1220 (EMBRYO DEFECTIVE 1220) |
| AT1G14640
| Predictedinteraction prediction | FSW = 0.5625
| Unknown | SWAP (SUPPRESSOR-OF-WHITE-APRICOT)/SURP DOMAIN-CONTAINING PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
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