Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G14640 - ( SWAP (Suppressor-of-White-APricot)/surp domain-containing protein )
42 Proteins interacs with AT1G14640Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G07590 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3773
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN D1 PUTATIVE / SNRNP CORE PROTEIN D1 PUTATIVE / SM PROTEIN D1 PUTATIVE |
AT4G02840 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.5009
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN D1 PUTATIVE / SNRNP CORE PROTEIN D1 PUTATIVE / SM PROTEIN D1 PUTATIVE |
AT1G20960 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.4167
| Unknown | EMB1507 (EMBRYO DEFECTIVE 1507) ATP BINDING / ATP-DEPENDENT HELICASE/ HELICASE/ NUCLEIC ACID BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING |
AT1G09760 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.4854
| Unknown | U2A (U2 SMALL NUCLEAR RIBONUCLEOPROTEIN A) PROTEIN BINDING |
AT1G09770 | PredictedAffinity Capture-MS | FSW = 0.3340
| Unknown | ATCDC5 (ARABIDOPSIS THALIANA CELL DIVISION CYCLE 5) DNA BINDING / TRANSCRIPTION FACTOR |
AT5G64270 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.4172
| Unknown | SPLICING FACTOR PUTATIVE |
AT1G80070 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.4110
| Unknown | SUS2 (ABNORMAL SUSPENSOR 2) |
AT3G55200 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3529
| Unknown | SPLICING FACTOR PUTATIVE |
AT3G59040 | Predictedinteraction prediction | FSW = 0.0162
| Unknown | PENTATRICOPEPTIDE (PPR) REPEAT-CONTAINING PROTEIN |
AT2G33340 | PredictedAffinity Capture-MSCo-purification | FSW = 0.2815
| Unknown | NUCLEOTIDE BINDING / UBIQUITIN-PROTEIN LIGASE |
AT5G08290 | PredictedAffinity Capture-MS | FSW = 0.4922
| Unknown | YLS8 CATALYTIC |
AT4G34430 | Predictedtwo hybrid | FSW = 0.0192
| Unknown | CHB3 DNA BINDING / TRANSCRIPTION FACTOR/ ZINC ION BINDING |
AT2G18510 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1689
| Unknown | EMB2444 (EMBRYO DEFECTIVE 2444) RNA BINDING / NUCLEIC ACID BINDING / NUCLEOTIDE BINDING |
AT3G19840 | PredictedAffinity Capture-MS | FSW = 0.2544
| Unknown | FF DOMAIN-CONTAINING PROTEIN / WW DOMAIN-CONTAINING PROTEIN |
AT3G52250 | PredictedCo-purification | FSW = 0.0118
| Unknown | DNA BINDING / TRANSCRIPTION FACTOR |
AT2G41500 | PredictedAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.3309
| Unknown | EMB2776 NUCLEOTIDE BINDING |
AT2G23930 | PredictedAffinity Capture-MS | FSW = 0.5786
| Unknown | SNRNP-G (PROBABLE SMALL NUCLEAR RIBONUCLEOPROTEIN G) |
AT5G27720 | PredictedAffinity Capture-MS | FSW = 0.2484
| Unknown | EMB1644 (EMBRYO DEFECTIVE 1644) |
AT3G11500 | Predictedinteraction prediction | FSW = 0.5625
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN G PUTATIVE / SNRNP-G PUTATIVE / SM PROTEIN G PUTATIVE |
AT1G28060 | PredictedAffinity Capture-MS | FSW = 0.3489
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN FAMILY PROTEIN / SNRNP FAMILY PROTEIN |
AT1G20580 | PredictedAffinity Capture-MS | FSW = 0.5258
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE |
AT1G04510 | PredictedAffinity Capture-MSCo-purification | FSW = 0.2890
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT2G22310 | Predictedinteraction predictiontwo hybridinterologs mapping | FSW = 0.0123
| Unknown | ATUBP4 (ARABIDOPSIS THALIANA UBIQUITIN-SPECIFIC PROTEASE 4) UBIQUITIN-SPECIFIC PROTEASE |
AT4G15900 | PredictedAffinity Capture-MS | FSW = 0.1686
| Unknown | PRL1 (PLEIOTROPIC REGULATORY LOCUS 1) BASAL TRANSCRIPTION REPRESSOR/ NUCLEOTIDE BINDING / PROTEIN BINDING |
AT2G32600 | Predictedtwo hybridtwo hybridtwo hybridtwo hybridtwo hybridReconstituted ComplexReconstituted ComplexAffinity Capture-MSAffinity Capture-MSAffinity Capture-MStwo hybridAffinity Capture-MStwo hybridinterologs mappinginteraction prediction | FSW = 0.4429
| Unknown | HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY PROTEIN |
AT5G06160 | Predictedinteraction predictiontwo hybridtwo hybridtwo hybridSynthetic RescueSynthetic LethalityReconstituted ComplexReconstituted ComplexAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MStwo hybridAffinity Capture-MSin vitroin vivotwo hybridtwo hybridin vivoin vitroAffinity Capture-MSinterologs mapping | FSW = 0.5354
| Unknown | ATO (ATROPOS) NUCLEIC ACID BINDING / ZINC ION BINDING |
AT3G13970 | PredictedAffinity Capture-MS | FSW = 0.0157
| Unknown | APG12B (AUTOPHAGY 12 B) |
AT1G60170 | PredictedAffinity Capture-MS | FSW = 0.4445
| Unknown | EMB1220 (EMBRYO DEFECTIVE 1220) |
AT3G05760 | PredictedAffinity Capture-MS | FSW = 0.2329
| Unknown | NUCLEIC ACID BINDING / ZINC ION BINDING |
AT3G17660 | PredictedSynthetic Lethality | FSW = 0.1469
| Unknown | AGD15 (ARF-GAP DOMAIN 15) ARF GTPASE ACTIVATOR/ DNA BINDING / ZINC ION BINDING |
AT4G03430 | PredictedAffinity Capture-MS | FSW = 0.3038
| Unknown | EMB2770 (EMBRYO DEFECTIVE 2770) RNA SPLICING FACTOR TRANSESTERIFICATION MECHANISM |
AT4G21660 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.6184
| Unknown | PROLINE-RICH SPLICEOSOME-ASSOCIATED (PSP) FAMILY PROTEIN |
AT1G49760 | PredictedAffinity Capture-MS | FSW = 0.0762
| Unknown | PAB8 (POLY(A) BINDING PROTEIN 8) RNA BINDING / TRANSLATION INITIATION FACTOR |
AT1G52980 | Predictedinteraction predictiontwo hybrid | FSW = 0.0865
| Unknown | GTP-BINDING FAMILY PROTEIN |
AT3G55220 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.4961
| Unknown | SPLICING FACTOR PUTATIVE |
AT3G60860 | Predictedtwo hybrid | FSW = 0.0172
| Unknown | GUANINE NUCLEOTIDE EXCHANGE FAMILY PROTEIN |
AT5G16640 | Predictedtwo hybrid | FSW = 0.0148
| Unknown | PENTATRICOPEPTIDE (PPR) REPEAT-CONTAINING PROTEIN |
AT5G41770 | PredictedAffinity Capture-MS | FSW = 0.2190
| Unknown | CROOKED NECK PROTEIN PUTATIVE / CELL CYCLE PROTEIN PUTATIVE |
AT1G22760 | PredictedAffinity Capture-MS | FSW = 0.1034
| Unknown | PAB3 (POLY(A) BINDING PROTEIN 3) RNA BINDING / TRANSLATION INITIATION FACTOR |
AT1G01960 | Predictedinteraction predictioninterologs mappingtwo hybrid | FSW = 0.0189
| Unknown | EDA10 (EMBRYO SAC DEVELOPMENT ARREST 10) ARF GUANYL-NUCLEOTIDE EXCHANGE FACTOR/ BINDING / GUANYL-NUCLEOTIDE EXCHANGE FACTOR |
AT1G03560 | Predictedtwo hybrid | FSW = 0.0489
| Unknown | PENTATRICOPEPTIDE (PPR) REPEAT-CONTAINING PROTEIN |
AT3G09620 | Predictedinteraction prediction | FSW = 0.0690
| Unknown | DEAD/DEAH BOX HELICASE PUTATIVE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454