Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Welcome to AtPIN
AtPIN will be upgraded. Please send your suggestions here
AT3G13970 - ( APG12B (AUTOPHAGY 12 B) )
46 Proteins interacs with AT3G13970Locus | Method | FSW ![]() | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT1G54270![]() ![]() ![]() ![]() | Predictedinteraction prediction | FSW = 0.0280
| Unknown | EIF4A-2 ATP-DEPENDENT HELICASE/ TRANSLATION INITIATION FACTOR |
AT4G04910![]() ![]() ![]() ![]() | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0095
| Unknown | NSF (N-ETHYLMALEIMIDE SENSITIVE FACTOR) ATP BINDING / BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING |
AT5G09650![]() ![]() ![]() ![]() | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0086
| Unknown | ATPPA6 (ARABIDOPSIS THALIANA PYROPHOSPHORYLASE 6) INORGANIC DIPHOSPHATASE/ PYROPHOSPHATASE |
AT5G64270![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.0084
| Unknown | SPLICING FACTOR PUTATIVE |
AT1G15710![]() ![]() ![]() ![]() | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0408
| Unknown | PREPHENATE DEHYDROGENASE FAMILY PROTEIN |
AT1G09830![]() ![]() ![]() ![]() | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0424
| Unknown | PHOSPHORIBOSYLAMINE--GLYCINE LIGASE (PUR2) |
AT2G45300![]() ![]() ![]() ![]() | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0495
| Unknown | 3-PHOSPHOSHIKIMATE 1-CARBOXYVINYLTRANSFERASE / 5-ENOLPYRUVYLSHIKIMATE-3-PHOSPHATE / EPSP SYNTHASE |
AT5G52640![]() ![]() ![]() ![]() | PredictedSynthetic Lethality | FSW = 0.0410
| Unknown | ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING |
AT1G75990![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.1502
| Unknown | 26S PROTEASOME REGULATORY SUBUNIT S3 PUTATIVE (RPN3) |
AT1G20200![]() ![]() ![]() ![]() | Predictedinteraction prediction | FSW = 0.1655
| Unknown | EMB2719 (EMBRYO DEFECTIVE 2719) ENZYME REGULATOR |
AT1G05500![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.0480
| Unknown | NTMC2T21 |
AT2G20580![]() ![]() ![]() ![]() | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0923
| Unknown | RPN1A (26S PROTEASOME REGULATORY SUBUNIT S2 1A) BINDING / ENZYME REGULATOR |
AT1G53750![]() ![]() ![]() ![]() | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.1083
| Unknown | RPT1A (REGULATORY PARTICLE TRIPLE-A 1A) ATPASE |
AT4G24820![]() ![]() ![]() ![]() | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.1346
| Unknown | 26S PROTEASOME REGULATORY SUBUNIT PUTATIVE (RPN7) |
AT3G12050![]() ![]() ![]() ![]() | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.1012
| Unknown | AHA1 DOMAIN-CONTAINING PROTEIN |
AT3G13920![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.0148
| Unknown | EIF4A1 (EUKARYOTIC TRANSLATION INITIATION FACTOR 4A1) ATP-DEPENDENT HELICASE/ TRANSLATION INITIATION FACTOR |
AT5G65750![]() ![]() ![]() ![]() | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0405
| Unknown | 2-OXOGLUTARATE DEHYDROGENASE E1 COMPONENT PUTATIVE / OXOGLUTARATE DECARBOXYLASE PUTATIVE / ALPHA-KETOGLUTARIC DEHYDROGENASE PUTATIVE |
AT5G26710![]() ![]() ![]() ![]() | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0068
| Unknown | GLUTAMATE-TRNA LIGASE PUTATIVE / GLUTAMYL-TRNA SYNTHETASE PUTATUVE / GLURS PUTATIVE |
AT5G58290![]() ![]() ![]() ![]() | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.1295
| Unknown | RPT3 (REGULATORY PARTICLE TRIPLE-A ATPASE 3) ATPASE |
AT1G14640![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.0157
| Unknown | SWAP (SUPPRESSOR-OF-WHITE-APRICOT)/SURP DOMAIN-CONTAINING PROTEIN |
AT1G14650![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.0327
| Unknown | SWAP (SUPPRESSOR-OF-WHITE-APRICOT)/SURP DOMAIN-CONTAINING PROTEIN / UBIQUITIN FAMILY PROTEIN |
AT2G35920![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.0544
| Unknown | HELICASE DOMAIN-CONTAINING PROTEIN |
AT3G07525![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.0816
| Unknown | ATG10 (AUTOPHAGY 10) TRANSPORTER/ UBIQUITIN ACTIVATING ENZYME |
AT5G17290![]() ![]() ![]() ![]() | PredictedReconstituted Complextwo hybridtwo hybridAffinity Capture-MStwo hybridAffinity Capture-WesternReconstituted Complex | FSW = 0.0400
| Unknown | APG5 (AUTOPHAGY 5) TRANSPORTER |
AT5G67170![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.0183
| Unknown | SEC-C MOTIF-CONTAINING PROTEIN / OTU-LIKE CYSTEINE PROTEASE FAMILY PROTEIN |
AT1G04170![]() ![]() ![]() ![]() | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0058
| Unknown | EIF2 GAMMA TRANSLATION FACTOR NUCLEIC ACID BINDING / TRANSLATION INITIATION FACTOR |
AT1G29150![]() ![]() ![]() ![]() | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0912
| Unknown | ATS9 (ARABIDOPSIS NON-ATPASE SUBUNIT 9) |
AT2G15790![]() ![]() ![]() ![]() | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0237
| Unknown | SQN (SQUINT) PEPTIDYL-PROLYL CIS-TRANS ISOMERASE |
AT2G19170![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.0627
| Unknown | SLP3 SERINE-TYPE PEPTIDASE |
AT2G22480![]() ![]() ![]() ![]() | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0292
| Unknown | PFK5 (PHOSPHOFRUCTOKINASE 5) 6-PHOSPHOFRUCTOKINASE |
AT2G26970![]() ![]() ![]() ![]() | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0181
| Unknown | EXONUCLEASE FAMILY PROTEIN |
AT3G03110![]() ![]() ![]() ![]() | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0335
| Unknown | XPO1B BINDING / PROTEIN TRANSPORTER |
AT5G45900![]() ![]() ![]() ![]() | Predictedinteraction predictiontwo hybridtwo hybridtwo hybridtwo hybridtwo hybridAffinity Capture-Westerninterologs mapping | FSW = 0.0523
| Unknown | APG7 (AUTOPHAGY 7) APG8 ACTIVATING ENZYME |
AT3G24090![]() ![]() ![]() ![]() | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0534
| Unknown | GLUTAMINE-FRUCTOSE-6-PHOSPHATE TRANSAMINASE (ISOMERIZING)/ SUGAR BINDING / TRANSAMINASE |
AT3G27000![]() ![]() ![]() ![]() | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0318
| Unknown | ARP2 (ACTIN RELATED PROTEIN 2) PROTEIN BINDING / STRUCTURAL CONSTITUENT OF CYTOSKELETON |
AT3G62120![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.0687
| Unknown | TRNA SYNTHETASE CLASS II (G H P AND S) FAMILY PROTEIN |
AT4G16580![]() ![]() ![]() ![]() | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0203
| Unknown | CATALYTIC |
AT4G38630![]() ![]() ![]() ![]() | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0666
| Unknown | RPN10 (REGULATORY PARTICLE NON-ATPASE 10) PEPTIDE RECEPTOR |
AT4G39830![]() ![]() ![]() ![]() | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0679
| Unknown | L-ASCORBATE OXIDASE PUTATIVE |
AT5G09900![]() ![]() ![]() ![]() | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.1426
| Unknown | EMB2107 (EMBRYO DEFECTIVE 2107) |
AT5G23540![]() ![]() ![]() ![]() | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.1175
| Unknown | 26S PROTEASOME REGULATORY SUBUNIT PUTATIVE |
AT5G46180![]() ![]() ![]() ![]() | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0277
| Unknown | DELTA-OAT ORNITHINE-OXO-ACID TRANSAMINASE |
AT5G48120![]() ![]() ![]() ![]() | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0497
| Unknown | BINDING |
AT5G61500![]() ![]() ![]() ![]() | Predictedinteraction predictiontwo hybridinterologs mapping | FSW = 0.0703
| Unknown | ATG3 |
AT5G65860![]() ![]() ![]() ![]() | Predictedinteraction prediction | FSW = 0.0379
| Unknown | ANKYRIN REPEAT FAMILY PROTEIN |
AT1G31970![]() ![]() ![]() ![]() | Predictedinteraction prediction | FSW = 0.0248
| Unknown | STRS1 (STRESS RESPONSE SUPPRESSOR 1) ATP BINDING / ATP-DEPENDENT HELICASE/ HELICASE/ NUCLEIC ACID BINDING |
Downloads
Quick help
Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454