Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT4G38630 - ( RPN10 (REGULATORY PARTICLE NON-ATPASE 10) peptide receptor )

202 Proteins interacs with AT4G38630
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT4G26080

Experimental

interaction detection method

FSW = 0.0050

Unknown

ABI1 (ABA INSENSITIVE 1) CALCIUM ION BINDING / PROTEIN SERINE/THREONINE PHOSPHATASE
AT3G10650

Experimental

FSW = 0.0051

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 24 PLANT STRUCTURES EXPRESSED DURING 14 GROWTH STAGES BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS NUCLEOPORIN-RELATED (TAIRAT5G202001) HAS 51621 BLAST HITS TO 25162 PROTEINS IN 1378 SPECIES ARCHAE - 161 BACTERIA - 11485 METAZOA - 15659 FUNGI - 10121 PLANTS - 1099 VIRUSES - 600 OTHER EUKARYOTES - 12496 (SOURCE NCBI BLINK)
AT5G45010

Experimental

FSW = 0.0238

Unknown

ATDSS1(V) (ARABIDOPSIS DSS1 HOMOLOG ON CHROMOSOME V)
AT1G21720

Predicted

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

FSW = 0.0751

Unknown

PBC1 (PROTEASOME BETA SUBUNIT C1) PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE
AT3G49910

Predicted

Affinity Capture-MS

FSW = 0.0524

Unknown

60S RIBOSOMAL PROTEIN L26 (RPL26A)
AT1G33120Predicted

Affinity Capture-MS

two hybrid

FSW = 0.0313

Unknown

60S RIBOSOMAL PROTEIN L9 (RPL90B)
AT3G09630

Predicted

Affinity Capture-MS

FSW = 0.0391

Unknown

60S RIBOSOMAL PROTEIN L4/L1 (RPL4A)
AT3G09200

Predicted

Affinity Capture-MS

FSW = 0.0181

Unknown

60S ACIDIC RIBOSOMAL PROTEIN P0 (RPP0B)
AT2G36160

Predicted

Affinity Capture-MS

FSW = 0.0178

Unknown

40S RIBOSOMAL PROTEIN S14 (RPS14A)
AT1G07660Predicted

synthetic growth defect

FSW = 0.0120

Unknown

HISTONE H4
AT2G01250

Predicted

two hybrid

FSW = 0.0092

Unknown

60S RIBOSOMAL PROTEIN L7 (RPL7B)
AT3G51260

Predicted

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

FSW = 0.1768

Unknown

PAD1 (20S PROTEASOME ALPHA SUBUNIT PAD1) ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE
AT3G04120

Predicted

Affinity Capture-MS

FSW = 0.0300

Unknown

GAPC1 (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C SUBUNIT 1) GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE (PHOSPHORYLATING)/ GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE
AT1G56070

Predicted

Affinity Capture-MS

FSW = 0.0391

Unknown

LOS1 COPPER ION BINDING / TRANSLATION ELONGATION FACTOR/ TRANSLATION FACTOR NUCLEIC ACID BINDING
AT3G12580

Predicted

Affinity Capture-MS

FSW = 0.0244

Unknown

HSP70 (HEAT SHOCK PROTEIN 70) ATP BINDING
AT2G20450

Predicted

Affinity Capture-MS

FSW = 0.0075

Unknown

60S RIBOSOMAL PROTEIN L14 (RPL14A)
AT2G37270

Predicted

Affinity Capture-MS

FSW = 0.0538

Unknown

ATRPS5B (RIBOSOMAL PROTEIN 5B) STRUCTURAL CONSTITUENT OF RIBOSOME
AT3G22630

Predicted

Co-purification

Co-purification

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-Western

Co-purification

Co-expression

FSW = 0.2304

Unknown

PBD1 (20S PROTEASOME BETA SUBUNIT D1) PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE
AT3G62290

Predicted

two hybrid

FSW = 0.0040

Unknown

ATARFA1E (ADP-RIBOSYLATION FACTOR A1E) GTP BINDING / PHOSPHOLIPASE ACTIVATOR/ PROTEIN BINDING
AT5G40810

Predicted

Affinity Capture-MS

FSW = 0.0141

Unknown

CYTOCHROME C1 PUTATIVE
AT4G01610

Predicted

two hybrid

FSW = 0.0134

Unknown

CATHEPSIN B-LIKE CYSTEINE PROTEASE PUTATIVE
AT5G45130

Predicted

Phenotypic Suppression

FSW = 0.0401

Unknown

RHA1 (RAB HOMOLOG 1) GTP BINDING
AT2G21580

Predicted

Affinity Capture-MS

FSW = 0.0313

Unknown

40S RIBOSOMAL PROTEIN S25 (RPS25B)
AT1G02305

Predicted

two hybrid

FSW = 0.0193

Unknown

CATHEPSIN B-LIKE CYSTEINE PROTEASE PUTATIVE
AT1G34030Predicted

Affinity Capture-MS

FSW = 0.0243

Unknown

40S RIBOSOMAL PROTEIN S18 (RPS18B)
AT3G22110

Predicted

Affinity Capture-MS

Affinity Capture-MS

Phenotypic Enhancement

synthetic growth defect

interaction prediction

FSW = 0.2010

Unknown

PAC1 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE
AT5G35590

Predicted

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

FSW = 0.1029

Unknown

PAA1 (PROTEASOME ALPHA SUBUNIT A 1) ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE
AT4G14800

Predicted

Co-purification

Co-purification

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Co-purification

Affinity Capture-Western

interaction prediction

FSW = 0.2207

Unknown

PBD2 (20S PROTEASOME BETA SUBUNIT 2) PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE
AT1G13440

Predicted

Affinity Capture-MS

FSW = 0.0301

Unknown

GAPC2 (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C2) NAD OR NADH BINDING / BINDING / CATALYTIC/ GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE (PHOSPHORYLATING)/ GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE
AT3G60820

Predicted

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

Co-expression

FSW = 0.0838

Unknown

PBF1 PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE
AT1G48830

Predicted

Affinity Capture-MS

FSW = 0.0388

Unknown

40S RIBOSOMAL PROTEIN S7 (RPS7A)
AT2G09990

Predicted

Affinity Capture-MS

FSW = 0.0397

Unknown

40S RIBOSOMAL PROTEIN S16 (RPS16A)
AT3G15000

Predicted

two hybrid

FSW = 0.0056

Unknown

LOCATED IN MITOCHONDRION EXPRESSED IN 23 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS PLASTID DEVELOPMENTAL PROTEIN DAG PUTATIVE (TAIRAT3G067902) HAS 50779 BLAST HITS TO 24732 PROTEINS IN 941 SPECIES ARCHAE - 10 BACTERIA - 4862 METAZOA - 25623 FUNGI - 7071 PLANTS - 6957 VIRUSES - 900 OTHER EUKARYOTES - 5356 (SOURCE NCBI BLINK)
AT3G12780

Predicted

Affinity Capture-MS

FSW = 0.0134

Unknown

PGK1 (PHOSPHOGLYCERATE KINASE 1) PHOSPHOGLYCERATE KINASE
AT1G74030

Predicted

Affinity Capture-MS

FSW = 0.0073

Unknown

ENOLASE PUTATIVE
AT5G59690Predicted

synthetic growth defect

FSW = 0.0686

Unknown

HISTONE H4
AT5G40610

Predicted

two hybrid

FSW = 0.0053

Unknown

GLYCEROL-3-PHOSPHATE DEHYDROGENASE (NAD+) / GPDH
AT2G30390

Predicted

Affinity Capture-MS

FSW = 0.0041

Unknown

FC2 (FERROCHELATASE 2) FERROCHELATASE
AT1G22170

Predicted

Affinity Capture-MS

FSW = 0.0160

Unknown

PHOSPHOGLYCERATE/BISPHOSPHOGLYCERATE MUTASE FAMILY PROTEIN
AT3G11630

Predicted

synthetic growth defect

FSW = 0.1061

Unknown

2-CYS PEROXIREDOXIN CHLOROPLAST (BAS1)
AT3G13580

Predicted

two hybrid

Affinity Capture-MS

FSW = 0.0257

Unknown

60S RIBOSOMAL PROTEIN L7 (RPL7D)
AT2G45300

Predicted

Phenotypic Suppression

FSW = 0.0662

Unknown

3-PHOSPHOSHIKIMATE 1-CARBOXYVINYLTRANSFERASE / 5-ENOLPYRUVYLSHIKIMATE-3-PHOSPHATE / EPSP SYNTHASE
AT4G01690

Predicted

synthetic growth defect

FSW = 0.0751

Unknown

PPOX PROTOPORPHYRINOGEN OXIDASE
AT5G63110

Predicted

Phenotypic Enhancement

synthetic growth defect

FSW = 0.0888

Unknown

HDA6 (HISTONE DEACETYLASE 6) HISTONE DEACETYLASE
AT5G56030

Predicted

synthetic growth defect

Dosage Growth Defect

FSW = 0.0337

Unknown

HSP81-2 (HEAT SHOCK PROTEIN 81-2) ATP BINDING
AT5G60390

Predicted

interologs mapping

FSW = 0.0328

Unknown

ELONGATION FACTOR 1-ALPHA / EF-1-ALPHA
AT3G05560

Predicted

Affinity Capture-MS

FSW = 0.0144

Unknown

60S RIBOSOMAL PROTEIN L22-2 (RPL22B)
AT2G04390

Predicted

Affinity Capture-MS

FSW = 0.0034

Unknown

40S RIBOSOMAL PROTEIN S17 (RPS17A)
AT2G39460

Predicted

two hybrid

Co-expression

FSW = 0.0065

Unknown

RPL23AA (RIBOSOMAL PROTEIN L23AA) RNA BINDING / NUCLEOTIDE BINDING / STRUCTURAL CONSTITUENT OF RIBOSOME
AT5G09260

Predicted

synthetic growth defect

FSW = 0.0527

Unknown

VPS202 (VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 202)
AT1G45000

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Co-expression

FSW = 0.1661

Unknown

26S PROTEASOME REGULATORY COMPLEX SUBUNIT P42D PUTATIVE
AT2G33370Predicted

two hybrid

FSW = 0.0221

Unknown

60S RIBOSOMAL PROTEIN L23 (RPL23B)
AT4G10450

Predicted

two hybrid

FSW = 0.0087

Unknown

60S RIBOSOMAL PROTEIN L9 (RPL90D)
AT5G52640

Predicted

synthetic growth defect

Dosage Growth Defect

FSW = 0.0572

Unknown

ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING
AT5G63680

Predicted

Affinity Capture-MS

FSW = 0.0146

Unknown

PYRUVATE KINASE PUTATIVE
AT1G05570

Predicted

interaction prediction

FSW = 0.0130

Unknown

CALS1 (CALLOSE SYNTHASE 1) 13-BETA-GLUCAN SYNTHASE/ TRANSFERASE TRANSFERRING GLYCOSYL GROUPS
AT1G75990

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.2340

Unknown

26S PROTEASOME REGULATORY SUBUNIT S3 PUTATIVE (RPN3)
AT1G20200

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

Co-expression

FSW = 0.2007

Unknown

EMB2719 (EMBRYO DEFECTIVE 2719) ENZYME REGULATOR
AT1G08820

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0134

Unknown

VAP27-2 (VAMP/SYNAPTOBREVIN-ASSOCIATED PROTEIN 27-2) STRUCTURAL MOLECULE
AT1G04810

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.2416

Unknown

26S PROTEASOME REGULATORY SUBUNIT PUTATIVE
AT2G20580

Predicted

Reconstituted Complex

Co-purification

Co-purification

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-Western

Reconstituted Complex

Affinity Capture-MS

Affinity Capture-MS

Synthetic Lethality

Affinity Capture-Western

Co-expression

FSW = 0.2486

Unknown

RPN1A (26S PROTEASOME REGULATORY SUBUNIT S2 1A) BINDING / ENZYME REGULATOR
AT1G64230

Predicted

synthetic growth defect

FSW = 0.0289

Unknown

UBIQUITIN-CONJUGATING ENZYME PUTATIVE
AT1G53750

Predicted

Co-purification

Affinity Capture-Western

Affinity Capture-Western

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

FSW = 0.2322

Unknown

RPT1A (REGULATORY PARTICLE TRIPLE-A 1A) ATPASE
AT5G19990

Predicted

Co-purification

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

FSW = 0.1952

Unknown

RPT6A (REGULATORY PARTICLE TRIPLE-A ATPASE 6A) ATPASE
AT1G47250

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.1128

Unknown

PAF2 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE
AT5G63880

Predicted

synthetic growth defect

FSW = 0.0514

Unknown

VPS201
AT3G53870

Predicted

Affinity Capture-MS

FSW = 0.0279

Unknown

40S RIBOSOMAL PROTEIN S3 (RPS3B)
AT5G42790

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

Co-expression

FSW = 0.1718

Unknown

PAF1 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE
AT2G20140

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-Western

Affinity Capture-MS

interaction prediction

FSW = 0.2250

Unknown

26S PROTEASE REGULATORY COMPLEX SUBUNIT 4 PUTATIVE
AT4G24820

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

Co-expression

FSW = 0.2197

Unknown

26S PROTEASOME REGULATORY SUBUNIT PUTATIVE (RPN7)
AT3G57290

Predicted

Affinity Capture-Western

FSW = 0.0230

Unknown

EIF3E (EUKARYOTIC TRANSLATION INITIATION FACTOR 3E) TRANSLATION INITIATION FACTOR
AT1G09100

Predicted

Affinity Capture-MS

FSW = 0.2057

Unknown

RPT5B (26S PROTEASOME AAA-ATPASE SUBUNIT RPT5B) ATPASE/ CALMODULIN BINDING
AT3G05530

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-Western

co-fractionation

Co-fractionation

FSW = 0.2307

Unknown

RPT5A (REGULATORY PARTICLE TRIPLE-A ATPASE 5A) ATPASE/ CALMODULIN BINDING
AT4G05190

Predicted

synthetic growth defect

Synthetic Lethality

Co-expression

FSW = 0.0986

Unknown

ATK5 (ARABIDOPSIS THALIANA KINESIN 5) MICROTUBULE MOTOR
AT5G67270

Predicted

synthetic growth defect

Phenotypic Enhancement

FSW = 0.1466

Unknown

ATEB1C (MICROTUBULE END BINDING PROTEIN 1) MICROTUBULE BINDING
AT2G24490

Predicted

Phenotypic Enhancement

FSW = 0.0478

Unknown

RPA2 (REPLICON PROTEIN A2) PROTEIN BINDING
AT3G13445

Predicted

co-fractionation

Co-fractionation

FSW = 0.0265

Unknown

TBP1 (TATA BINDING PROTEIN 1) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR/ BINDING
AT5G15520

Predicted

Affinity Capture-MS

FSW = 0.0222

Unknown

40S RIBOSOMAL PROTEIN S19 (RPS19B)
AT1G03190

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0717

Unknown

UVH6 (ULTRAVIOLET HYPERSENSITIVE 6) ATP BINDING / ATP-DEPENDENT DNA HELICASE/ ATP-DEPENDENT HELICASE/ DNA BINDING / HYDROLASE ACTING ON ACID ANHYDRIDES IN PHOSPHORUS-CONTAINING ANHYDRIDES / NUCLEIC ACID BINDING
AT5G44200

Predicted

synthetic growth defect

FSW = 0.0096

Unknown

CBP20 (CAP-BINDING PROTEIN 20) RNA BINDING / RNA CAP BINDING
AT4G38130

Predicted

synthetic growth defect

Co-expression

FSW = 0.0154

Unknown

HD1 (HISTONE DEACETYLASE 1) BASAL TRANSCRIPTION REPRESSOR/ HISTONE DEACETYLASE/ PROTEIN BINDING
AT2G35670

Predicted

Phenotypic Enhancement

FSW = 0.0850

Unknown

FIS2 (FERTILIZATION INDEPENDENT SEED 2) TRANSCRIPTION FACTOR
AT1G07370

Predicted

Phenotypic Enhancement

FSW = 0.1391

Unknown

PCNA1 (PROLIFERATING CELLULAR NUCLEAR ANTIGEN) DNA BINDING / DNA POLYMERASE PROCESSIVITY FACTOR/ PROTEIN BINDING
AT2G24500

Predicted

Phenotypic Suppression

FSW = 0.0669

Unknown

FZF TRANSCRIPTION FACTOR
AT3G19210

Predicted

synthetic growth defect

Phenotypic Enhancement

FSW = 0.1336

Unknown

ATRAD54 (ARABIDOPSIS HOMOLOG OF RAD54) ATP BINDING / DNA BINDING / HELICASE/ NUCLEIC ACID BINDING
AT2G27470

Predicted

Phenotypic Enhancement

FSW = 0.0540

Unknown

NF-YB11 (NUCLEAR FACTOR Y SUBUNIT B11) TRANSCRIPTION FACTOR
AT1G55520

Predicted

co-fractionation

Co-fractionation

FSW = 0.0257

Unknown

TBP2 (TATA BINDING PROTEIN 2) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR/ TATA-BINDING PROTEIN BINDING
AT2G06210

Predicted

Phenotypic Enhancement

FSW = 0.0682

Unknown

ELF8 (EARLY FLOWERING 8) BINDING
AT2G44950

Predicted

synthetic growth defect

Synthetic Lethality

Phenotypic Enhancement

Synthetic Lethality

FSW = 0.1745

Unknown

HUB1 (HISTONE MONO-UBIQUITINATION 1) PROTEIN BINDING / PROTEIN HOMODIMERIZATION/ UBIQUITIN-PROTEIN LIGASE/ ZINC ION BINDING
AT5G43430

Predicted

two hybrid

FSW = 0.0053

Unknown

ETFBETA ELECTRON CARRIER
AT4G36480

Predicted

two hybrid

FSW = 0.0083

Unknown

ATLCB1 (LONG-CHAIN BASE1) PROTEIN BINDING / SERINE C-PALMITOYLTRANSFERASE
AT3G47690

Predicted

synthetic growth defect

FSW = 0.1006

Unknown

ATEB1A MICROTUBULE BINDING
AT1G13060

Predicted

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

FSW = 0.1482

Unknown

PBE1 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE
AT2G05170

Predicted

synthetic growth defect

FSW = 0.0372

Unknown

ATVPS11 BINDING / PROTEIN BINDING / TRANSPORTER/ ZINC ION BINDING
AT2G31970

Predicted

synthetic growth defect

Phenotypic Enhancement

FSW = 0.1268

Unknown

RAD50 ATP BINDING / NUCLEASE/ ZINC ION BINDING
AT5G57450

Predicted

synthetic growth defect

FSW = 0.1344

Unknown

XRCC3 ATP BINDING / DAMAGED DNA BINDING / PROTEIN BINDING / SINGLE-STRANDED DNA BINDING
AT1G16190

Predicted

Synthetic Lethality

synthetic growth defect

Phenotypic Enhancement

Phenotypic Enhancement

Affinity Capture-MS

Synthetic Lethality

Affinity Capture-MS

Phenotypic Enhancement

synthetic growth defect

interaction prediction

FSW = 0.1942

Unknown

DNA REPAIR PROTEIN RAD23 PUTATIVE
AT1G79650

Predicted

two hybrid

Co-expression

FSW = 0.0185

Unknown

RAD23 DAMAGED DNA BINDING
AT1G79750

Predicted

Affinity Capture-MS

FSW = 0.0724

Unknown

ATNADP-ME4 (NADP-MALIC ENZYME 4) MALATE DEHYDROGENASE (OXALOACETATE-DECARBOXYLATING) (NADP+)/ MALIC ENZYME/ OXIDOREDUCTASE ACTING ON NADH OR NADPH NAD OR NADP AS ACCEPTOR
AT5G09500

Predicted

Affinity Capture-MS

FSW = 0.0306

Unknown

40S RIBOSOMAL PROTEIN S15 (RPS15C)
AT1G16470

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-Western

Co-expression

FSW = 0.1357

Unknown

PAB1 (PROTEASOME SUBUNIT PAB1) ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE
AT5G19910

Predicted

synthetic growth defect

FSW = 0.1367

Unknown

SOH1 FAMILY PROTEIN
AT5G58290

Predicted

two hybrid

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

Co-expression

FSW = 0.2396

Unknown

RPT3 (REGULATORY PARTICLE TRIPLE-A ATPASE 3) ATPASE
AT5G54260

Predicted

synthetic growth defect

Phenotypic Enhancement

FSW = 0.1021

Unknown

MRE11 (MEIOTIC RECOMBINATION 11) ENDONUCLEASE/ EXONUCLEASE/ HYDROLASE/ MANGANESE ION BINDING / PROTEIN SERINE/THREONINE PHOSPHATASE
AT1G77140

Predicted

synthetic growth defect

FSW = 0.0602

Unknown

VPS45 (VACUOLAR PROTEIN SORTING 45) PROTEIN TRANSPORTER
AT5G56710

Predicted

Affinity Capture-MS

FSW = 0.0312

Unknown

60S RIBOSOMAL PROTEIN L31 (RPL31C)
AT2G05840

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0720

Unknown

PAA2 (20S PROTEASOME SUBUNIT PAA2) ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE
AT5G38470

Predicted

two hybrid

two hybrid

in vivo

in vivo

in vitro

in vitro

Affinity Capture-MS

Phenotypic Enhancement

synthetic growth defect

Phenotypic Enhancement

Phenotypic Enhancement

Affinity Capture-MS

two hybrid

Affinity Capture-MS

Synthetic Lethality

synthetic growth defect

Affinity Capture-Western

Phenotypic Enhancement

in vitro

in vivo

Co-expression

FSW = 0.1769

Unknown

DNA REPAIR PROTEIN RAD23 PUTATIVE
AT2G45790

Predicted

Affinity Capture-MS

FSW = 0.0062

Unknown

PMM (PHOSPHOMANNOMUTASE) PHOSPHOMANNOMUTASE
AT3G54860

Predicted

synthetic growth defect

FSW = 0.0623

Unknown

VACUOLAR PROTEIN SORTING PROTEIN PUTATIVE
AT5G20850

Predicted

synthetic growth defect

Phenotypic Enhancement

FSW = 0.1301

Unknown

ATRAD51 ATP BINDING / DNA BINDING / DNA-DEPENDENT ATPASE/ DAMAGED DNA BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING / SEQUENCE-SPECIFIC DNA BINDING
AT3G02540

Predicted

two hybrid

in vivo

in vitro

Affinity Capture-MS

in vitro

in vivo

two hybrid

FSW = 0.0218

Unknown

RAD23-3 (PUTATIVE DNA REPAIR PROTEIN RAD23-3) DAMAGED DNA BINDING
AT3G04400

Predicted

two hybrid

FSW = 0.0134

Unknown

EMB2171 (EMBRYO DEFECTIVE 2171) STRUCTURAL CONSTITUENT OF RIBOSOME
AT3G55280

Predicted

two hybrid

FSW = 0.0398

Unknown

RPL23AB (RIBOSOMAL PROTEIN L23AB) RNA BINDING / NUCLEOTIDE BINDING / STRUCTURAL CONSTITUENT OF RIBOSOME
AT5G06360

Predicted

two hybrid

Co-expression

FSW = 0.0039

Unknown

RIBOSOMAL PROTEIN S8E FAMILY PROTEIN
AT5G14670

Predicted

two hybrid

FSW = 0.0040

Unknown

ATARFA1B (ADP-RIBOSYLATION FACTOR A1B) GTP BINDING / PHOSPHOLIPASE ACTIVATOR/ PROTEIN BINDING
AT5G56580

Predicted

two hybrid

FSW = 0.0021

Unknown

MKK6 (MAP KINASE KINASE 6) MAP KINASE KINASE/ KINASE
AT5G49510

Predicted

two hybrid

two hybrid

Phenotypic Suppression

Co-expression

FSW = 0.1211

Unknown

PDF3 (PREFOLDIN 3) UNFOLDED PROTEIN BINDING
AT1G04020

Predicted

synthetic growth defect

FSW = 0.1135

Unknown

BARD1 (BREAST CANCER ASSOCIATED RING 1) DNA BINDING / TRANSCRIPTION COACTIVATOR
AT1G12470

Predicted

synthetic growth defect

FSW = 0.0682

Unknown

PEP3/VPS18/DEEP ORANGE FAMILY PROTEIN
AT1G29150

Predicted

Co-purification

Co-purification

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Phenotypic Enhancement

interaction prediction

Co-expression

FSW = 0.2806

Unknown

ATS9 (ARABIDOPSIS NON-ATPASE SUBUNIT 9)
AT1G51710

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Phenotypic Enhancement

interaction prediction

FSW = 0.3559

Unknown

UBP6 (UBIQUITIN-SPECIFIC PROTEASE 6) CALMODULIN BINDING / UBIQUITIN-SPECIFIC PROTEASE
AT1G54370

Predicted

synthetic growth defect

FSW = 0.0265

Unknown

NHX5 SODIUM ION TRANSMEMBRANE TRANSPORTER/ SODIUMHYDROGEN ANTIPORTER
AT1G55915

Predicted

synthetic growth defect

FSW = 0.0527

Unknown

ZINC ION BINDING
AT1G56450

Predicted

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

Co-expression

FSW = 0.1011

Unknown

PBG1 PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE
AT1G59890

Predicted

synthetic growth defect

Phenotypic Enhancement

FSW = 0.0958

Unknown

SNL5 (SIN3-LIKE 5)
AT1G64520

Predicted

interaction prediction

Synthetic Lethality

interologs mapping

co-fractionation

Co-fractionation

Affinity Capture-Western

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

interologs mapping

Affinity Capture-Western

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-Western

co-fractionation

Co-fractionation

interologs mapping

Synthetic Lethality

Reconstituted Complex

interaction prediction

Co-expression

FSW = 0.2675

Unknown

RPN12A (REGULATORY PARTICLE NON-ATPASE 12A) PEPTIDASE
AT1G64550

Predicted

Phenotypic Enhancement

FSW = 0.0462

Unknown

ATGCN3 TRANSPORTER
AT1G66740

Predicted

synthetic growth defect

Phenotypic Enhancement

FSW = 0.1538

Unknown

SGA2
AT1G67190

Predicted

synthetic growth defect

FSW = 0.1336

Unknown

F-BOX FAMILY PROTEIN
AT1G71350

Predicted

synthetic growth defect

FSW = 0.0134

Unknown

EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1 FAMILY PROTEIN
AT1G79210

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-Western

interaction prediction

FSW = 0.0772

Unknown

20S PROTEASOME ALPHA SUBUNIT B PUTATIVE
AT1G79730

Predicted

Synthetic Lethality

Phenotypic Enhancement

Co-expression

FSW = 0.0464

Unknown

ELF7 (EARLY FLOWERING 7)
AT2G02760

Predicted

Synthetic Lethality

synthetic growth defect

Phenotypic Enhancement

Synthetic Lethality

FSW = 0.1845

Unknown

ATUBC2 (UBIQUITING-CONJUGATING ENZYME 2) UBIQUITIN-PROTEIN LIGASE
AT2G03430

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

FSW = 0.1687

Unknown

ANKYRIN REPEAT FAMILY PROTEIN
AT2G17190

Predicted

Phenotypic Enhancement

Phenotypic Enhancement

Affinity Capture-Western

Reconstituted Complex

Synthetic Lethality

FSW = 0.0991

Unknown

UBIQUITIN FAMILY PROTEIN
AT2G18600

Predicted

synthetic growth defect

FSW = 0.0509

Unknown

RUB1-CONJUGATING ENZYME PUTATIVE
AT2G27970

Predicted

Phenotypic Enhancement

FSW = 0.0437

Unknown

CKS2 (CDK-SUBUNIT 2) CYCLIN-DEPENDENT PROTEIN KINASE/ CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR
AT2G32730

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Reconstituted Complex

FSW = 0.1979

Unknown

26S PROTEASOME REGULATORY SUBUNIT PUTATIVE
AT2G39770

Predicted

Affinity Capture-MS

FSW = 0.0821

Unknown

CYT1 (CYTOKINESIS DEFECTIVE 1) MANNOSE-1-PHOSPHATE GUANYLYLTRANSFERASE/ NUCLEOTIDYLTRANSFERASE
AT2G44580

Predicted

Synthetic Lethality

synthetic growth defect

Phenotypic Enhancement

interaction prediction

FSW = 0.2537

Unknown

PROTEIN BINDING / ZINC ION BINDING
AT3G02820

Predicted

synthetic growth defect

FSW = 0.1573

Unknown

ZINC KNUCKLE (CCHC-TYPE) FAMILY PROTEIN
AT3G08560

Predicted

Affinity Capture-MS

FSW = 0.0065

Unknown

VHA-E2 (VACUOLAR H+-ATPASE SUBUNIT E ISOFORM 2) HYDROGEN-EXPORTING ATPASE PHOSPHORYLATIVE MECHANISM / PROTON-TRANSPORTING ATPASE ROTATIONAL MECHANISM
AT3G11270

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

FSW = 0.2756

Unknown

MEE34 (MATERNAL EFFECT EMBRYO ARREST 34)
AT3G12400

Predicted

synthetic growth defect

FSW = 0.0826

Unknown

ELC UBIQUITIN BINDING
AT3G21060

Predicted

Synthetic Lethality

synthetic growth defect

Synthetic Lethality

Phenotypic Enhancement

FSW = 0.0804

Unknown

TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT3G22480

Predicted

Phenotypic Suppression

FSW = 0.0979

Unknown

PREFOLDIN-RELATED KE2 FAMILY PROTEIN
AT3G24090

Predicted

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

FSW = 0.0314

Unknown

GLUTAMINE-FRUCTOSE-6-PHOSPHATE TRANSAMINASE (ISOMERIZING)/ SUGAR BINDING / TRANSAMINASE
AT3G42660

Predicted

Synthetic Lethality

synthetic growth defect

Phenotypic Enhancement

interaction prediction

Co-expression

FSW = 0.2484

Unknown

NUCLEOTIDE BINDING
AT3G54380

Predicted

Phenotypic Suppression

FSW = 0.0984

Unknown

SAC3/GANP FAMILY PROTEIN
AT3G55170

Predicted

Affinity Capture-MS

FSW = 0.0209

Unknown

60S RIBOSOMAL PROTEIN L35 (RPL35C)
AT4G05320

Predicted

Affinity Capture-MS

FSW = 0.0326

Unknown

UBQ10 (POLYUBIQUITIN 10) PROTEIN BINDING
AT4G19003

Predicted

synthetic growth defect

FSW = 0.0708

Unknown

VPS25
AT4G19006

Predicted

two hybrid

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

FSW = 0.2703

Unknown

26S PROTEASOME REGULATORY SUBUNIT PUTATIVE (RPN9)
AT4G26230

Predicted

Affinity Capture-MS

FSW = 0.0135

Unknown

60S RIBOSOMAL PROTEIN L31 (RPL31B)
AT4G27040

Predicted

synthetic growth defect

FSW = 0.0803

Unknown

VPS22
AT4G27180

Predicted

synthetic growth defect

Synthetic Lethality

Phenotypic Enhancement

FSW = 0.1180

Unknown

ATK2 (ARABIDOPSIS THALIANA KINESIN 2) MICROTUBULE BINDING / MICROTUBULE MOTOR
AT4G29040

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.1786

Unknown

RPT2A (REGULATORY PARTICLE AAA-ATPASE 2A) ATPASE
AT4G33240

Predicted

Phenotypic Enhancement

FSW = 0.1132

Unknown

1-PHOSPHATIDYLINOSITOL-4-PHOSPHATE 5-KINASE/ ATP BINDING / PHOSPHATIDYLINOSITOL PHOSPHATE KINASE/ PROTEIN BINDING / ZINC ION BINDING
AT1G04730Predicted

synthetic growth defect

Phenotypic Enhancement

FSW = 0.2269

Unknown

AAA-TYPE ATPASE FAMILY PROTEIN
AT1G06790

Predicted

Phenotypic Enhancement

FSW = 0.0043

Unknown

RNA POLYMERASE RPB7 N-TERMINAL DOMAIN-CONTAINING PROTEIN
AT1G08780

Predicted

Phenotypic Suppression

FSW = 0.1056

Unknown

AIP3 (ABI3-INTERACTING PROTEIN 3) UNFOLDED PROTEIN BINDING
AT1G29990

Predicted

Phenotypic Suppression

FSW = 0.1027

Unknown

PDF6 (PREFOLDIN 6) UNFOLDED PROTEIN BINDING
AT1G61040

Predicted

Synthetic Lethality

FSW = 0.0812

Unknown

VIP5 (VERNALIZATION INDEPENDENCE 5) DNA BINDING
AT1G79890

Predicted

Phenotypic Enhancement

FSW = 0.1366

Unknown

HELICASE-RELATED
AT2G13680

Predicted

Synthetic Lethality

Synthetic Lethality

FSW = 0.0087

Unknown

CALS5 (CALLOSE SYNTHASE 5) 13-BETA-GLUCAN SYNTHASE
AT3G12670

Predicted

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

FSW = 0.0773

Unknown

EMB2742 (EMBRYO DEFECTIVE 2742) CTP SYNTHASE/ CATALYTIC
AT3G13970

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0666

Unknown

APG12B (AUTOPHAGY 12 B)
AT3G18520

Predicted

Phenotypic Enhancement

FSW = 0.0547

Unknown

HDA15 HISTONE DEACETYLASE
AT3G18860

Predicted

Phenotypic Enhancement

FSW = 0.1540

Unknown

TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT3G26020

Predicted

Phenotypic Enhancement

FSW = 0.0719

Unknown

SERINE/THREONINE PROTEIN PHOSPHATASE 2A (PP2A) REGULATORY SUBUNIT B PUTATIVE
AT5G09900

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

Co-expression

FSW = 0.2305

Unknown

EMB2107 (EMBRYO DEFECTIVE 2107)
AT5G10790

Predicted

Synthetic Lethality

Phenotypic Enhancement

FSW = 0.1248

Unknown

UBP22 (UBIQUITIN-SPECIFIC PROTEASE 22) UBIQUITIN THIOLESTERASE/ UBIQUITIN-SPECIFIC PROTEASE/ ZINC ION BINDING
AT5G14530

Predicted

Phenotypic Enhancement

FSW = 0.0278

Unknown

TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT5G15400

Predicted

synthetic growth defect

Phenotypic Enhancement

Phenotypic Enhancement

FSW = 0.0744

Unknown

U-BOX DOMAIN-CONTAINING PROTEIN
AT5G23290

Predicted

Phenotypic Suppression

FSW = 0.0838

Unknown

PDF5 (PREFOLDIN 5) UNFOLDED PROTEIN BINDING
AT5G23540

Predicted

Co-purification

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-Western

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-Western

co-fractionation

Co-fractionation

Synthetic Lethality

interaction prediction

Co-expression

FSW = 0.2446

Unknown

26S PROTEASOME REGULATORY SUBUNIT PUTATIVE
AT5G26680

Predicted

synthetic growth defect

Phenotypic Enhancement

FSW = 0.1391

Unknown

ENDONUCLEASE PUTATIVE
AT5G48640

Predicted

Phenotypic Suppression

FSW = 0.0632

Unknown

CYCLIN FAMILY PROTEIN
AT5G51140

Predicted

Affinity Capture-MS

FSW = 0.0062

Unknown

PSEUDOURIDINE SYNTHASE FAMILY PROTEIN
AT5G63610

Predicted

Phenotypic Suppression

FSW = 0.0238

Unknown

CDKE1 (CYCLIN-DEPENDENT KINASE E1) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
AT4G39830

Predicted

synthetic growth defect

FSW = 0.0123

Unknown

L-ASCORBATE OXIDASE PUTATIVE
AT5G10400Predicted

Phenotypic Enhancement

FSW = 0.0531

Unknown

HISTONE H3
AT5G27740

Predicted

Phenotypic Enhancement

FSW = 0.0752

Unknown

EMB2775 (EMBRYO DEFECTIVE 2775) DNA BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING
AT5G27970Predicted

Synthetic Lethality

FSW = 0.1355

Unknown

BINDING
AT5G41700

Predicted

synthetic growth defect

Phenotypic Enhancement

FSW = 0.0729

Unknown

UBC8 (UBIQUITIN CONJUGATING ENZYME 8) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE
AT5G43010

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

FSW = 0.1690

Unknown

RPT4A ATPASE
AT1G65650

Predicted

Affinity Capture-Western

Reconstituted Complex

FSW = 0.0431

Unknown

UCH2 UBIQUITIN THIOLESTERASE/ UBIQUITIN-SPECIFIC PROTEASE
AT1G78770

Predicted

Affinity Capture-Western

FSW = 0.0065

Unknown

CELL DIVISION CYCLE FAMILY PROTEIN
AT3G21280

Predicted

Affinity Capture-Western

FSW = 0.0667

Unknown

UBP7 (UBIQUITIN-SPECIFIC PROTEASE 7) UBIQUITIN THIOLESTERASE/ UBIQUITIN-SPECIFIC PROTEASE
AT4G22150

Predicted

Synthetic Lethality

FSW = 0.0111

Unknown

PUX3 PROTEIN BINDING
AT5G05560

Predicted

Reconstituted Complex

FSW = 0.0147

Unknown

EMB2771 (EMBRYO DEFECTIVE 2771) UBIQUITIN-PROTEIN LIGASE
AT1G64750

Predicted

Affinity Capture-MS

Affinity Capture-MS

Phenotypic Enhancement

Synthetic Lethality

Co-expression

FSW = 0.2243

Unknown

ATDSS1(I) (ARABIDOPSIS THALIANA DELETION OF SUV3 SUPRESSOR 1(I))
AT1G54210

Predicted

Affinity Capture-MS

FSW = 0.0595

Unknown

ATG12A (AUTOPHAGY 12 A) PROTEIN BINDING
AT1G30820

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0897

Unknown

CTP SYNTHASE PUTATIVE / UTP--AMMONIA LIGASE PUTATIVE
AT1G55255Predicted

Synthetic Lethality

synthetic growth defect

Synthetic Lethality

FSW = 0.1061

Unknown

CTP SYNTHASE PUTATIVE / UTP--AMMONIA LIGASE PUTATIVE
AT1G14400

Predicted

Synthetic Lethality

synthetic growth defect

Synthetic Lethality

FSW = 0.1471

Unknown

UBC1 (UBIQUITIN CARRIER PROTEIN 1) UBIQUITIN-PROTEIN LIGASE
AT1G10450

Predicted

synthetic growth defect

FSW = 0.0270

Unknown

SNL6 (SIN3-LIKE 6)
AT3G49660

Predicted

synthetic growth defect

Synthetic Lethality

FSW = 0.0797

Unknown

TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT5G04920

Predicted

synthetic growth defect

FSW = 0.0788

Unknown

VACUOLAR PROTEIN SORTING 36 FAMILY PROTEIN / VPS36 FAMILY PROTEIN
AT1G65580

Predicted

two hybrid

FSW = 0.0111

Unknown

FRA3 (FRAGILE FIBER3) INOSITOL OR PHOSPHATIDYLINOSITOL PHOSPHATASE
AT5G54670

Predicted

interaction prediction

FSW = 0.0899

Unknown

ATK3 (ARABIDOPSIS THALIANA KINESIN 3) ATPASE/ MICROTUBULE BINDING / MICROTUBULE MOTOR

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Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

Learn more

How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454