Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT4G39830 - ( L-ascorbate oxidase putative )
33 Proteins interacs with AT4G39830Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT1G19910 | Predictedtwo hybridinteraction prediction | FSW = 0.0324
| Unknown | AVA-P2 ATPASE/ PROTON-TRANSPORTING ATPASE ROTATIONAL MECHANISM |
AT2G28190 | PredictedPhenotypic Enhancement | FSW = 0.0066
| Unknown | CSD2 (COPPER/ZINC SUPEROXIDE DISMUTASE 2) SUPEROXIDE DISMUTASE |
AT5G05670 | Predictedtwo hybrid | FSW = 0.0674
| Unknown | SIGNAL RECOGNITION PARTICLE BINDING |
AT5G52640 | Predictedsynthetic growth defect | FSW = 0.0126
| Unknown | ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING |
AT4G17270 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0512
| Unknown | MO25 FAMILY PROTEIN |
AT3G25540 | Predictedinteraction prediction | FSW = 0.0347
| Unknown | LAG1 |
AT5G21105 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.0889
| Unknown | L-ASCORBATE OXIDASE/ COPPER ION BINDING / OXIDOREDUCTASE |
AT2G39630 | Predictedtwo hybridinteraction prediction | FSW = 0.1062
| Unknown | GLYCOSYL TRANSFERASE FAMILY 2 PROTEIN |
AT1G67730 | Predictedtwo hybrid | FSW = 0.0797
| Unknown | YBR159 KETOREDUCTASE/ OXIDOREDUCTASE |
AT1G15960 | Predictedsynthetic growth defect | FSW = 0.0777
| Unknown | NRAMP6 INORGANIC ANION TRANSMEMBRANE TRANSPORTER/ METAL ION TRANSMEMBRANE TRANSPORTER |
AT4G39220 | PredictedAffinity Capture-Western | FSW = 0.0801
| Unknown | ATRER1A |
AT1G47240 | Predictedsynthetic growth defect | FSW = 0.0649
| Unknown | NRAMP2 INORGANIC ANION TRANSMEMBRANE TRANSPORTER/ METAL ION TRANSMEMBRANE TRANSPORTER |
AT1G08830 | PredictedPhenotypic Enhancement | FSW = 0.0114
| Unknown | CSD1 (COPPER/ZINC SUPEROXIDE DISMUTASE 1) SUPEROXIDE DISMUTASE |
AT5G51130 | Predictedtwo hybridtwo hybrid | FSW = 0.0239
| Unknown | METHYLTRANSFERASE |
AT1G13580 | Predictedtwo hybrid | FSW = 0.0303
| Unknown | LAG13 (LAG1 LONGEVITY ASSURANCE HOMOLOG 3) |
AT1G16570 | Predictedtwo hybridinteraction prediction | FSW = 0.1059
| Unknown | GLYCOSYL TRANSFERASE FAMILY 1 PROTEIN |
AT1G25500 | Predictedtwo hybrid | FSW = 0.0202
| Unknown | CHOLINE TRANSPORTER-RELATED |
AT1G57600 | Predictedtwo hybridinteraction prediction | FSW = 0.0693
| Unknown | MEMBRANE BOUND O-ACYL TRANSFERASE (MBOAT) FAMILY PROTEIN |
AT3G06460 | Predictedtwo hybridinteraction prediction | FSW = 0.0562
| Unknown | GNS1/SUR4 MEMBRANE FAMILY PROTEIN |
AT4G22750 | Predictedtwo hybrid | FSW = 0.1053
| Unknown | ZINC FINGER (DHHC TYPE) FAMILY PROTEIN |
AT1G08750 | Predictedtwo hybridinteraction prediction | FSW = 0.2026
| Unknown | GPI-ANCHOR TRANSAMIDASE PUTATIVE |
AT3G07300 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0101
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR 2B FAMILY PROTEIN / EIF-2B FAMILY PROTEIN |
AT3G13970 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0679
| Unknown | APG12B (AUTOPHAGY 12 B) |
AT3G27000 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0229
| Unknown | ARP2 (ACTIN RELATED PROTEIN 2) PROTEIN BINDING / STRUCTURAL CONSTITUENT OF CYTOSKELETON |
AT4G38630 | Predictedsynthetic growth defect | FSW = 0.0123
| Unknown | RPN10 (REGULATORY PARTICLE NON-ATPASE 10) PEPTIDE RECEPTOR |
AT5G17290 | PredictedAffinity Capture-MS | FSW = 0.0541
| Unknown | APG5 (AUTOPHAGY 5) TRANSPORTER |
AT5G60020 | Predictedinterologs mapping | FSW = 0.0901
| Unknown | LAC17 (LACCASE 17) LACCASE |
AT2G03410 | PredictedAffinity Capture-MS | FSW = 0.0195
| Unknown | MO25 FAMILY PROTEIN |
AT1G54210 | PredictedAffinity Capture-MS | FSW = 0.0455
| Unknown | ATG12A (AUTOPHAGY 12 A) PROTEIN BINDING |
AT2G18240 | PredictedAffinity Capture-Western | FSW = 0.0855
| Unknown | RER1 PROTEIN PUTATIVE |
AT3G60800 | Predictedtwo hybrid | FSW = 0.0973
| Unknown | ZINC FINGER (DHHC TYPE) FAMILY PROTEIN |
AT2G18770 | Predictedtwo hybridinteraction prediction | FSW = 0.0842
| Unknown | SIGNAL RECOGNITION PARTICLE BINDING |
AT1G24470 | Predictedtwo hybrid | FSW = 0.0839
| Unknown | SHORT-CHAIN DEHYDROGENASE/REDUCTASE (SDR) FAMILY PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454